Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18280

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18275 and HSERO_RS18280 are separated by 7 nucleotidesHSERO_RS18280 and HSERO_RS18285 overlap by 4 nucleotides HSERO_RS18275: HSERO_RS18275 - CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase, at 4,193,951 to 4,195,033 _RS18275 HSERO_RS18280: HSERO_RS18280 - anthranilate 1,2-dioxygenase small subunit, at 4,195,041 to 4,195,541 _RS18280 HSERO_RS18285: HSERO_RS18285 - Rieske (2Fe-2S) protein, at 4,195,538 to 4,196,818 _RS18285 Position (kb) 4195 4196Strain fitness (log2 ratio) -1 0 1 2at 4194.045 kb on - strandat 4194.069 kb on + strand, within HSERO_RS18275at 4194.266 kb on - strand, within HSERO_RS18275at 4194.323 kb on - strand, within HSERO_RS18275at 4194.446 kb on + strand, within HSERO_RS18275at 4194.513 kb on - strandat 4195.123 kb on + strand, within HSERO_RS18280at 4195.203 kb on + strand, within HSERO_RS18280at 4195.562 kb on + strandat 4195.640 kb on + strandat 4195.652 kb on + strandat 4195.692 kb on + strand, within HSERO_RS18285at 4195.783 kb on + strand, within HSERO_RS18285at 4195.783 kb on + strand, within HSERO_RS18285at 4196.141 kb on - strand, within HSERO_RS18285at 4196.225 kb on + strand, within HSERO_RS18285at 4196.330 kb on + strand, within HSERO_RS18285at 4196.363 kb on + strand, within HSERO_RS18285

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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4,194,045 - +0.3
4,194,069 + HSERO_RS18275 0.11 -0.1
4,194,266 - HSERO_RS18275 0.29 +0.5
4,194,323 - HSERO_RS18275 0.34 -0.1
4,194,446 + HSERO_RS18275 0.46 +0.9
4,194,513 - -0.8
4,195,123 + HSERO_RS18280 0.16 +0.3
4,195,203 + HSERO_RS18280 0.32 +2.2
4,195,562 + +1.0
4,195,640 + +0.2
4,195,652 + +1.1
4,195,692 + HSERO_RS18285 0.12 +0.3
4,195,783 + HSERO_RS18285 0.19 -0.8
4,195,783 + HSERO_RS18285 0.19 -0.1
4,196,141 - HSERO_RS18285 0.47 +0.1
4,196,225 + HSERO_RS18285 0.54 +0.2
4,196,330 + HSERO_RS18285 0.62 -0.9
4,196,363 + HSERO_RS18285 0.64 +0.1

Or see this region's nucleotide sequence