Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18105

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18100 and HSERO_RS18105 are separated by 311 nucleotides HSERO_RS18100: HSERO_RS18100 - hypothetical protein, at 4,159,098 to 4,159,682 _RS18100 HSERO_RS18105: HSERO_RS18105 - hypothetical protein, at 4,159,994 to 4,160,560 _RS18105 Position (kb) 4159 4160 4161Strain fitness (log2 ratio) -1 0 1 2at 4159.170 kb on - strand, within HSERO_RS18100at 4159.203 kb on + strand, within HSERO_RS18100at 4159.287 kb on + strand, within HSERO_RS18100at 4159.491 kb on + strand, within HSERO_RS18100at 4159.529 kb on - strand, within HSERO_RS18100at 4159.539 kb on - strand, within HSERO_RS18100at 4159.583 kb on - strand, within HSERO_RS18100at 4159.790 kb on + strandat 4160.223 kb on + strand, within HSERO_RS18105at 4160.454 kb on - strand, within HSERO_RS18105at 4160.528 kb on + strandat 4160.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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4,159,170 - HSERO_RS18100 0.12 -0.0
4,159,203 + HSERO_RS18100 0.18 -0.8
4,159,287 + HSERO_RS18100 0.32 -0.1
4,159,491 + HSERO_RS18100 0.67 -0.1
4,159,529 - HSERO_RS18100 0.74 -0.2
4,159,539 - HSERO_RS18100 0.75 -0.6
4,159,583 - HSERO_RS18100 0.83 -0.9
4,159,790 + +1.4
4,160,223 + HSERO_RS18105 0.40 +0.2
4,160,454 - HSERO_RS18105 0.81 +1.8
4,160,528 + +0.8
4,160,583 - +2.0

Or see this region's nucleotide sequence