Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03520

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03510 and HSERO_RS03515 overlap by 4 nucleotidesHSERO_RS03515 and HSERO_RS03520 are separated by 10 nucleotidesHSERO_RS03520 and HSERO_RS03525 are separated by 97 nucleotides HSERO_RS03510: HSERO_RS03510 - proline aminopeptidase P II, at 763,194 to 764,540 _RS03510 HSERO_RS03515: HSERO_RS03515 - mannose-1-phosphate guanylyltransferase, at 764,537 to 765,253 _RS03515 HSERO_RS03520: HSERO_RS03520 - aminoglycoside phosphotransferase, at 765,264 to 766,295 _RS03520 HSERO_RS03525: HSERO_RS03525 - organic solvent tolerance transmembrane protein, at 766,393 to 768,693 _RS03525 Position (kb) 765 766 767Strain fitness (log2 ratio) -2 -1 0 1 2at 765.091 kb on - strand, within HSERO_RS03515at 765.558 kb on + strand, within HSERO_RS03520at 765.558 kb on + strand, within HSERO_RS03520at 765.622 kb on - strand, within HSERO_RS03520at 765.670 kb on + strand, within HSERO_RS03520at 765.750 kb on - strand, within HSERO_RS03520at 765.839 kb on + strand, within HSERO_RS03520

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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765,091 - HSERO_RS03515 0.77 +0.4
765,558 + HSERO_RS03520 0.28 +2.0
765,558 + HSERO_RS03520 0.28 -2.1
765,622 - HSERO_RS03520 0.35 +2.3
765,670 + HSERO_RS03520 0.39 -1.1
765,750 - HSERO_RS03520 0.47 +1.5
765,839 + HSERO_RS03520 0.56 -0.2

Or see this region's nucleotide sequence