Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03235

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS03230 and HSERO_RS03235 are separated by 332 nucleotidesHSERO_RS03235 and HSERO_RS03240 are separated by 211 nucleotides HSERO_RS03230: HSERO_RS03230 - transcriptional regulator, at 711,025 to 711,738 _RS03230 HSERO_RS03235: HSERO_RS03235 - hypothetical protein, at 712,071 to 712,484 _RS03235 HSERO_RS03240: HSERO_RS03240 - membrane protein, at 712,696 to 713,649 _RS03240 Position (kb) 712 713Strain fitness (log2 ratio) -1 0 1 2at 711.089 kb on + strandat 711.333 kb on + strand, within HSERO_RS03230at 711.341 kb on - strand, within HSERO_RS03230at 711.433 kb on + strand, within HSERO_RS03230at 711.483 kb on + strand, within HSERO_RS03230at 711.508 kb on + strand, within HSERO_RS03230at 711.563 kb on - strand, within HSERO_RS03230at 711.587 kb on - strand, within HSERO_RS03230at 711.620 kb on - strand, within HSERO_RS03230at 711.856 kb on - strandat 711.866 kb on + strandat 711.866 kb on + strandat 711.951 kb on + strandat 712.231 kb on + strand, within HSERO_RS03235at 712.588 kb on + strandat 712.955 kb on + strand, within HSERO_RS03240at 713.109 kb on + strand, within HSERO_RS03240at 713.183 kb on - strand, within HSERO_RS03240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
711,089 + -0.5
711,333 + HSERO_RS03230 0.43 +0.3
711,341 - HSERO_RS03230 0.44 +2.6
711,433 + HSERO_RS03230 0.57 -0.2
711,483 + HSERO_RS03230 0.64 +0.4
711,508 + HSERO_RS03230 0.68 -0.3
711,563 - HSERO_RS03230 0.75 -0.6
711,587 - HSERO_RS03230 0.79 -0.0
711,620 - HSERO_RS03230 0.83 -0.4
711,856 - +0.1
711,866 + +0.6
711,866 + +0.3
711,951 + -0.3
712,231 + HSERO_RS03235 0.39 +0.7
712,588 + +0.3
712,955 + HSERO_RS03240 0.27 +0.4
713,109 + HSERO_RS03240 0.43 +0.3
713,183 - HSERO_RS03240 0.51 +0.6

Or see this region's nucleotide sequence