Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02295 and HSERO_RS02300 are separated by 17 nucleotides HSERO_RS02300 and HSERO_RS02305 overlap by 17 nucleotides HSERO_RS02305 and HSERO_RS02310 are separated by 28 nucleotides
HSERO_RS02295: HSERO_RS02295 - Rieske (2Fe-2S) protein, at 502,854 to 503,885
_RS02295
HSERO_RS02300: HSERO_RS02300 - nitrate ABC transporter ATPase, at 503,903 to 504,760
_RS02300
HSERO_RS02305: HSERO_RS02305 - ABC transporter ATP-binding protein, at 504,744 to 505,547
_RS02305
HSERO_RS02310: HSERO_RS02310 - amidohydrolase, at 505,576 to 506,991
_RS02310
Position (kb) 503
504
505 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 502.905 kb on - strand at 503.041 kb on - strand, within HSERO_RS02295 at 503.187 kb on + strand, within HSERO_RS02295 at 503.362 kb on + strand, within HSERO_RS02295 at 503.384 kb on - strand, within HSERO_RS02295 at 503.534 kb on - strand, within HSERO_RS02295 at 503.594 kb on - strand, within HSERO_RS02295 at 503.787 kb on + strand at 503.795 kb on - strand at 503.797 kb on + strand at 503.841 kb on - strand at 503.999 kb on + strand, within HSERO_RS02300 at 504.027 kb on + strand, within HSERO_RS02300 at 504.035 kb on - strand, within HSERO_RS02300 at 504.083 kb on + strand, within HSERO_RS02300 at 504.199 kb on - strand, within HSERO_RS02300 at 504.367 kb on - strand at 504.500 kb on - strand at 504.616 kb on - strand, within HSERO_RS02300 at 504.719 kb on - strand at 504.822 kb on - strand at 505.052 kb on - strand, within HSERO_RS02305 at 505.175 kb on + strand, within HSERO_RS02305 at 505.201 kb on + strand, within HSERO_RS02305 at 505.209 kb on - strand, within HSERO_RS02305 at 505.224 kb on - strand, within HSERO_RS02305 at 505.241 kb on + strand, within HSERO_RS02305 at 505.308 kb on - strand, within HSERO_RS02305 at 505.339 kb on + strand, within HSERO_RS02305 at 505.386 kb on + strand, within HSERO_RS02305 at 505.394 kb on - strand, within HSERO_RS02305 at 505.532 kb on + strand at 505.626 kb on - strand at 505.758 kb on + strand, within HSERO_RS02310
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 502,905 - +0.5 503,041 - HSERO_RS02295 0.18 +0.2 503,187 + HSERO_RS02295 0.32 +0.9 503,362 + HSERO_RS02295 0.49 +0.5 503,384 - HSERO_RS02295 0.51 -0.2 503,534 - HSERO_RS02295 0.66 +0.5 503,594 - HSERO_RS02295 0.72 +0.3 503,787 + +0.7 503,795 - -0.2 503,797 + +0.1 503,841 - +1.2 503,999 + HSERO_RS02300 0.11 +2.4 504,027 + HSERO_RS02300 0.14 +0.3 504,035 - HSERO_RS02300 0.15 -0.0 504,083 + HSERO_RS02300 0.21 +2.1 504,199 - HSERO_RS02300 0.34 +0.4 504,367 - -1.2 504,500 - +3.9 504,616 - HSERO_RS02300 0.83 +1.4 504,719 - -0.7 504,822 - +1.2 505,052 - HSERO_RS02305 0.38 +0.6 505,175 + HSERO_RS02305 0.54 +1.1 505,201 + HSERO_RS02305 0.57 -0.0 505,209 - HSERO_RS02305 0.58 -0.7 505,224 - HSERO_RS02305 0.60 +0.4 505,241 + HSERO_RS02305 0.62 +0.5 505,308 - HSERO_RS02305 0.70 -0.7 505,339 + HSERO_RS02305 0.74 +0.5 505,386 + HSERO_RS02305 0.80 +1.1 505,394 - HSERO_RS02305 0.81 -1.9 505,532 + -0.5 505,626 - -0.8 505,758 + HSERO_RS02310 0.13 -0.5
Or see this region's nucleotide sequence