Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01315

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01310 and HSERO_RS01315 are separated by 12 nucleotidesHSERO_RS01315 and HSERO_RS01320 are separated by 202 nucleotides HSERO_RS01310: HSERO_RS01310 - esterase, at 278,286 to 279,383 _RS01310 HSERO_RS01315: HSERO_RS01315 - transcriptional regulator, at 279,396 to 280,061 _RS01315 HSERO_RS01320: HSERO_RS01320 - RND transporter MFP subunit, at 280,264 to 281,337 _RS01320 Position (kb) 279 280 281Strain fitness (log2 ratio) -1 0 1 2at 278.407 kb on + strand, within HSERO_RS01310at 278.461 kb on + strand, within HSERO_RS01310at 278.536 kb on - strand, within HSERO_RS01310at 278.553 kb on - strand, within HSERO_RS01310at 278.594 kb on + strand, within HSERO_RS01310at 278.660 kb on + strand, within HSERO_RS01310at 279.095 kb on - strand, within HSERO_RS01310at 279.107 kb on - strand, within HSERO_RS01310at 279.252 kb on - strand, within HSERO_RS01310at 279.322 kb on - strandat 279.678 kb on - strand, within HSERO_RS01315at 279.759 kb on - strand, within HSERO_RS01315at 279.952 kb on + strand, within HSERO_RS01315at 279.960 kb on - strand, within HSERO_RS01315at 280.041 kb on + strandat 280.621 kb on + strand, within HSERO_RS01320at 280.736 kb on - strand, within HSERO_RS01320at 280.835 kb on - strand, within HSERO_RS01320at 281.017 kb on - strand, within HSERO_RS01320

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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278,407 + HSERO_RS01310 0.11 -0.0
278,461 + HSERO_RS01310 0.16 +0.2
278,536 - HSERO_RS01310 0.23 -0.3
278,553 - HSERO_RS01310 0.24 -0.6
278,594 + HSERO_RS01310 0.28 +0.4
278,660 + HSERO_RS01310 0.34 -1.2
279,095 - HSERO_RS01310 0.74 +0.4
279,107 - HSERO_RS01310 0.75 +0.0
279,252 - HSERO_RS01310 0.88 -0.3
279,322 - -0.1
279,678 - HSERO_RS01315 0.42 +0.2
279,759 - HSERO_RS01315 0.55 +0.9
279,952 + HSERO_RS01315 0.83 -0.1
279,960 - HSERO_RS01315 0.85 +1.4
280,041 + +0.2
280,621 + HSERO_RS01320 0.33 +0.1
280,736 - HSERO_RS01320 0.44 +2.4
280,835 - HSERO_RS01320 0.53 -0.7
281,017 - HSERO_RS01320 0.70 +0.8

Or see this region's nucleotide sequence