Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00440 and HSERO_RS00445 are separated by 53 nucleotides HSERO_RS00445 and HSERO_RS00450 are separated by 254 nucleotides HSERO_RS00450 and HSERO_RS00455 are separated by 311 nucleotides
HSERO_RS00440: HSERO_RS00440 - PTS fructose transporter subunit IIA, at 103,603 to 104,079
_RS00440
HSERO_RS00445: HSERO_RS00445 - phosphocarrier protein HPr, at 104,133 to 104,402
_RS00445
HSERO_RS00450: HSERO_RS00450 - phosphoenolpyruvate-protein phosphotransferase, at 104,657 to 106,444
_RS00450
HSERO_RS00455: HSERO_RS00455 - homoserine O-acetyltransferase, at 106,756 to 107,895
_RS00455
Position (kb) 104
105
106
107 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 104.335 kb on + strand, within HSERO_RS00445 at 104.460 kb on - strand at 104.529 kb on + strand at 104.607 kb on - strand at 104.626 kb on + strand at 105.086 kb on - strand, within HSERO_RS00450 at 105.305 kb on - strand, within HSERO_RS00450 at 105.305 kb on - strand, within HSERO_RS00450 at 105.398 kb on + strand, within HSERO_RS00450 at 105.551 kb on + strand, within HSERO_RS00450 at 105.620 kb on + strand, within HSERO_RS00450 at 105.679 kb on - strand, within HSERO_RS00450 at 106.578 kb on - strand at 106.712 kb on + strand at 106.717 kb on + strand at 106.720 kb on - strand at 106.729 kb on + strand at 106.756 kb on - strand at 106.784 kb on - strand at 106.828 kb on - strand at 106.881 kb on + strand, within HSERO_RS00455 at 106.889 kb on - strand, within HSERO_RS00455 at 106.896 kb on + strand, within HSERO_RS00455 at 106.901 kb on + strand, within HSERO_RS00455 at 106.908 kb on + strand, within HSERO_RS00455 at 107.056 kb on - strand, within HSERO_RS00455 at 107.148 kb on + strand, within HSERO_RS00455 at 107.296 kb on + strand, within HSERO_RS00455
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 104,335 + HSERO_RS00445 0.75 +1.6 104,460 - -2.5 104,529 + +0.2 104,607 - +0.7 104,626 + +0.1 105,086 - HSERO_RS00450 0.24 +2.1 105,305 - HSERO_RS00450 0.36 -1.1 105,305 - HSERO_RS00450 0.36 +0.5 105,398 + HSERO_RS00450 0.41 +0.9 105,551 + HSERO_RS00450 0.50 +0.5 105,620 + HSERO_RS00450 0.54 +2.6 105,679 - HSERO_RS00450 0.57 +0.9 106,578 - -3.7 106,712 + -1.8 106,717 + -0.4 106,720 - -2.4 106,729 + -0.4 106,756 - -3.1 106,784 - -1.6 106,828 - -2.6 106,881 + HSERO_RS00455 0.11 -5.6 106,889 - HSERO_RS00455 0.12 -5.4 106,896 + HSERO_RS00455 0.12 -2.2 106,901 + HSERO_RS00455 0.13 -2.2 106,908 + HSERO_RS00455 0.13 -0.8 107,056 - HSERO_RS00455 0.26 -2.5 107,148 + HSERO_RS00455 0.34 -4.5 107,296 + HSERO_RS00455 0.47 -2.2
Or see this region's nucleotide sequence