Experiment: beta-Cyclodextrin 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19160 and HMPREF1058_RS19155 are separated by 81 nucleotides HMPREF1058_RS19155 and HMPREF1058_RS21305 are separated by 60 nucleotides HMPREF1058_RS21305 and HMPREF1058_RS19150 are separated by 21 nucleotides
HMPREF1058_RS19160: HMPREF1058_RS19160 - hypothetical protein, at 14,022 to 14,381
_RS19160
HMPREF1058_RS19155: HMPREF1058_RS19155 - DUF2829 domain-containing protein, at 14,463 to 14,921
_RS19155
HMPREF1058_RS21305: HMPREF1058_RS21305 - hypothetical protein, at 14,982 to 15,545
_RS21305
HMPREF1058_RS19150: HMPREF1058_RS19150 - phage portal protein, at 15,567 to 16,973
_RS19150
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.989 kb on - strand at 14.096 kb on + strand, within HMPREF1058_RS19160 at 14.096 kb on + strand, within HMPREF1058_RS19160 at 14.111 kb on + strand, within HMPREF1058_RS19160 at 14.149 kb on - strand, within HMPREF1058_RS19160 at 14.153 kb on + strand, within HMPREF1058_RS19160 at 14.153 kb on + strand, within HMPREF1058_RS19160 at 14.164 kb on - strand, within HMPREF1058_RS19160 at 14.205 kb on - strand, within HMPREF1058_RS19160 at 14.261 kb on + strand, within HMPREF1058_RS19160 at 14.324 kb on + strand, within HMPREF1058_RS19160 at 14.363 kb on + strand at 14.363 kb on + strand at 14.363 kb on + strand at 14.392 kb on + strand at 14.396 kb on + strand at 14.459 kb on + strand at 14.549 kb on + strand, within HMPREF1058_RS19155 at 14.549 kb on + strand, within HMPREF1058_RS19155 at 14.594 kb on + strand, within HMPREF1058_RS19155 at 14.649 kb on + strand, within HMPREF1058_RS19155 at 14.649 kb on + strand, within HMPREF1058_RS19155 at 14.737 kb on - strand, within HMPREF1058_RS19155 at 14.738 kb on + strand, within HMPREF1058_RS19155 at 14.856 kb on - strand, within HMPREF1058_RS19155 at 14.921 kb on + strand at 14.979 kb on + strand at 14.996 kb on + strand at 14.998 kb on + strand at 14.999 kb on - strand at 14.999 kb on - strand at 15.078 kb on + strand, within HMPREF1058_RS21305 at 15.215 kb on + strand, within HMPREF1058_RS21305 at 15.285 kb on + strand, within HMPREF1058_RS21305 at 15.532 kb on - strand at 15.545 kb on + strand at 15.568 kb on + strand at 15.664 kb on + strand at 15.664 kb on + strand at 15.725 kb on + strand, within HMPREF1058_RS19150 at 15.789 kb on + strand, within HMPREF1058_RS19150 at 15.789 kb on + strand, within HMPREF1058_RS19150 at 15.851 kb on + strand, within HMPREF1058_RS19150 at 15.851 kb on + strand, within HMPREF1058_RS19150 at 15.874 kb on - strand, within HMPREF1058_RS19150 at 16.022 kb on + strand, within HMPREF1058_RS19150 at 16.069 kb on + strand, within HMPREF1058_RS19150 at 16.074 kb on + strand, within HMPREF1058_RS19150 at 16.174 kb on + strand, within HMPREF1058_RS19150 at 16.233 kb on + strand, within HMPREF1058_RS19150 at 16.351 kb on + strand, within HMPREF1058_RS19150 at 16.352 kb on - strand, within HMPREF1058_RS19150 at 16.369 kb on + strand, within HMPREF1058_RS19150 at 16.369 kb on + strand, within HMPREF1058_RS19150 at 16.370 kb on - strand, within HMPREF1058_RS19150 at 16.402 kb on - strand, within HMPREF1058_RS19150 at 16.412 kb on + strand, within HMPREF1058_RS19150 at 16.413 kb on - strand, within HMPREF1058_RS19150 at 16.413 kb on - strand, within HMPREF1058_RS19150 at 16.464 kb on + strand, within HMPREF1058_RS19150 at 16.464 kb on + strand, within HMPREF1058_RS19150 at 16.465 kb on - strand, within HMPREF1058_RS19150 at 16.465 kb on - strand, within HMPREF1058_RS19150 at 16.469 kb on + strand, within HMPREF1058_RS19150 at 16.489 kb on + strand, within HMPREF1058_RS19150 at 16.511 kb on - strand, within HMPREF1058_RS19150 at 16.511 kb on - strand, within HMPREF1058_RS19150 at 16.530 kb on + strand, within HMPREF1058_RS19150
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 5 mg/ml (C) remove 13,989 - -0.8 14,096 + HMPREF1058_RS19160 0.21 +0.4 14,096 + HMPREF1058_RS19160 0.21 +1.1 14,111 + HMPREF1058_RS19160 0.25 -0.6 14,149 - HMPREF1058_RS19160 0.35 -1.3 14,153 + HMPREF1058_RS19160 0.36 -1.0 14,153 + HMPREF1058_RS19160 0.36 -0.6 14,164 - HMPREF1058_RS19160 0.39 +1.4 14,205 - HMPREF1058_RS19160 0.51 -0.4 14,261 + HMPREF1058_RS19160 0.66 +1.2 14,324 + HMPREF1058_RS19160 0.84 -0.5 14,363 + -1.2 14,363 + -2.0 14,363 + -1.0 14,392 + -0.6 14,396 + +0.3 14,459 + -1.1 14,549 + HMPREF1058_RS19155 0.19 -0.4 14,549 + HMPREF1058_RS19155 0.19 -0.2 14,594 + HMPREF1058_RS19155 0.29 +0.1 14,649 + HMPREF1058_RS19155 0.41 -0.7 14,649 + HMPREF1058_RS19155 0.41 -2.6 14,737 - HMPREF1058_RS19155 0.60 -0.4 14,738 + HMPREF1058_RS19155 0.60 +0.1 14,856 - HMPREF1058_RS19155 0.86 -2.9 14,921 + -0.4 14,979 + -3.0 14,996 + +0.4 14,998 + +0.8 14,999 - +0.4 14,999 - -2.7 15,078 + HMPREF1058_RS21305 0.17 -1.0 15,215 + HMPREF1058_RS21305 0.41 -1.4 15,285 + HMPREF1058_RS21305 0.54 -0.1 15,532 - -0.1 15,545 + -2.6 15,568 + -1.6 15,664 + -0.2 15,664 + +2.4 15,725 + HMPREF1058_RS19150 0.11 -0.8 15,789 + HMPREF1058_RS19150 0.16 -2.6 15,789 + HMPREF1058_RS19150 0.16 -1.6 15,851 + HMPREF1058_RS19150 0.20 +0.2 15,851 + HMPREF1058_RS19150 0.20 -0.9 15,874 - HMPREF1058_RS19150 0.22 -1.4 16,022 + HMPREF1058_RS19150 0.32 +0.9 16,069 + HMPREF1058_RS19150 0.36 -0.9 16,074 + HMPREF1058_RS19150 0.36 -0.3 16,174 + HMPREF1058_RS19150 0.43 -0.2 16,233 + HMPREF1058_RS19150 0.47 +0.7 16,351 + HMPREF1058_RS19150 0.56 -0.4 16,352 - HMPREF1058_RS19150 0.56 -3.2 16,369 + HMPREF1058_RS19150 0.57 -3.0 16,369 + HMPREF1058_RS19150 0.57 -1.0 16,370 - HMPREF1058_RS19150 0.57 +2.1 16,402 - HMPREF1058_RS19150 0.59 +0.9 16,412 + HMPREF1058_RS19150 0.60 -2.0 16,413 - HMPREF1058_RS19150 0.60 -0.8 16,413 - HMPREF1058_RS19150 0.60 +0.4 16,464 + HMPREF1058_RS19150 0.64 +0.4 16,464 + HMPREF1058_RS19150 0.64 -0.2 16,465 - HMPREF1058_RS19150 0.64 -1.4 16,465 - HMPREF1058_RS19150 0.64 -1.2 16,469 + HMPREF1058_RS19150 0.64 -1.5 16,489 + HMPREF1058_RS19150 0.66 -3.3 16,511 - HMPREF1058_RS19150 0.67 -0.3 16,511 - HMPREF1058_RS19150 0.67 -1.1 16,530 + HMPREF1058_RS19150 0.68 +0.2
Or see this region's nucleotide sequence