Experiment: beta-Cyclodextrin 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16415 and HMPREF1058_RS16410 are separated by 149 nucleotides HMPREF1058_RS16410 and HMPREF1058_RS16405 are separated by 178 nucleotides HMPREF1058_RS16405 and HMPREF1058_RS16400 are separated by 92 nucleotides
HMPREF1058_RS16415: HMPREF1058_RS16415 - metallophosphoesterase, at 676,749 to 677,912
_RS16415
HMPREF1058_RS16410: HMPREF1058_RS16410 - L-serine ammonia-lyase, at 678,062 to 679,270
_RS16410
HMPREF1058_RS16405: HMPREF1058_RS16405 - PepSY-like domain-containing protein, at 679,449 to 679,889
_RS16405
HMPREF1058_RS16400: HMPREF1058_RS16400 - DUF4738 domain-containing protein, at 679,982 to 680,551
_RS16400
Position (kb) 678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 677.156 kb on + strand, within HMPREF1058_RS16415 at 677.156 kb on + strand, within HMPREF1058_RS16415 at 677.156 kb on + strand, within HMPREF1058_RS16415 at 677.157 kb on - strand, within HMPREF1058_RS16415 at 677.262 kb on + strand, within HMPREF1058_RS16415 at 677.302 kb on + strand, within HMPREF1058_RS16415 at 677.414 kb on - strand, within HMPREF1058_RS16415 at 677.487 kb on + strand, within HMPREF1058_RS16415 at 677.488 kb on - strand, within HMPREF1058_RS16415 at 677.491 kb on + strand, within HMPREF1058_RS16415 at 677.491 kb on + strand, within HMPREF1058_RS16415 at 677.491 kb on + strand at 677.491 kb on + strand, within HMPREF1058_RS16415 at 677.492 kb on - strand, within HMPREF1058_RS16415 at 677.492 kb on - strand, within HMPREF1058_RS16415 at 677.492 kb on - strand, within HMPREF1058_RS16415 at 677.570 kb on - strand, within HMPREF1058_RS16415 at 677.570 kb on - strand, within HMPREF1058_RS16415 at 677.800 kb on + strand at 677.894 kb on - strand at 677.894 kb on - strand at 677.894 kb on - strand at 677.906 kb on - strand at 677.919 kb on + strand at 677.968 kb on - strand at 678.038 kb on + strand at 678.038 kb on + strand at 678.041 kb on + strand at 678.041 kb on + strand at 678.041 kb on + strand at 678.042 kb on - strand at 678.042 kb on - strand at 678.082 kb on - strand at 678.084 kb on - strand at 678.118 kb on + strand at 678.248 kb on - strand, within HMPREF1058_RS16410 at 678.248 kb on - strand, within HMPREF1058_RS16410 at 678.438 kb on - strand, within HMPREF1058_RS16410 at 678.442 kb on + strand, within HMPREF1058_RS16410 at 678.442 kb on + strand, within HMPREF1058_RS16410 at 678.495 kb on - strand, within HMPREF1058_RS16410 at 678.552 kb on + strand, within HMPREF1058_RS16410 at 678.552 kb on + strand, within HMPREF1058_RS16410 at 678.644 kb on + strand, within HMPREF1058_RS16410 at 678.645 kb on - strand, within HMPREF1058_RS16410 at 678.650 kb on - strand, within HMPREF1058_RS16410 at 678.697 kb on - strand, within HMPREF1058_RS16410 at 678.798 kb on - strand, within HMPREF1058_RS16410 at 678.874 kb on + strand, within HMPREF1058_RS16410 at 678.874 kb on + strand, within HMPREF1058_RS16410 at 678.875 kb on - strand, within HMPREF1058_RS16410 at 678.875 kb on - strand, within HMPREF1058_RS16410 at 678.879 kb on + strand, within HMPREF1058_RS16410 at 678.880 kb on - strand, within HMPREF1058_RS16410 at 678.930 kb on + strand, within HMPREF1058_RS16410 at 679.002 kb on - strand, within HMPREF1058_RS16410 at 679.079 kb on - strand, within HMPREF1058_RS16410 at 679.079 kb on - strand, within HMPREF1058_RS16410 at 679.094 kb on + strand, within HMPREF1058_RS16410 at 679.215 kb on + strand at 679.216 kb on - strand at 679.217 kb on + strand at 679.217 kb on + strand at 679.220 kb on - strand at 679.309 kb on - strand at 679.309 kb on - strand at 679.337 kb on + strand at 679.338 kb on - strand at 679.356 kb on - strand at 679.395 kb on + strand at 679.407 kb on - strand at 679.421 kb on + strand at 679.422 kb on - strand at 679.492 kb on - strand at 679.535 kb on + strand, within HMPREF1058_RS16405 at 679.556 kb on + strand, within HMPREF1058_RS16405 at 679.556 kb on + strand, within HMPREF1058_RS16405 at 679.557 kb on - strand, within HMPREF1058_RS16405 at 679.567 kb on + strand, within HMPREF1058_RS16405 at 679.580 kb on + strand, within HMPREF1058_RS16405 at 679.582 kb on + strand, within HMPREF1058_RS16405 at 679.592 kb on + strand, within HMPREF1058_RS16405 at 679.638 kb on + strand, within HMPREF1058_RS16405 at 679.639 kb on - strand, within HMPREF1058_RS16405 at 679.740 kb on - strand, within HMPREF1058_RS16405 at 679.863 kb on - strand at 679.899 kb on + strand at 679.983 kb on + strand at 680.063 kb on - strand, within HMPREF1058_RS16400 at 680.085 kb on + strand, within HMPREF1058_RS16400 at 680.085 kb on + strand, within HMPREF1058_RS16400 at 680.086 kb on - strand, within HMPREF1058_RS16400 at 680.123 kb on + strand, within HMPREF1058_RS16400 at 680.180 kb on - strand, within HMPREF1058_RS16400 at 680.204 kb on + strand, within HMPREF1058_RS16400
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 5 mg/ml (C) remove 677,156 + HMPREF1058_RS16415 0.35 +0.2 677,156 + HMPREF1058_RS16415 0.35 -1.0 677,156 + HMPREF1058_RS16415 0.35 -0.9 677,157 - HMPREF1058_RS16415 0.35 +1.6 677,262 + HMPREF1058_RS16415 0.44 +0.6 677,302 + HMPREF1058_RS16415 0.48 +2.4 677,414 - HMPREF1058_RS16415 0.57 -1.5 677,487 + HMPREF1058_RS16415 0.63 -1.8 677,488 - HMPREF1058_RS16415 0.63 -1.3 677,491 + HMPREF1058_RS16415 0.64 +0.7 677,491 + HMPREF1058_RS16415 0.64 +1.4 677,491 + +1.2 677,491 + HMPREF1058_RS16415 0.64 +0.0 677,492 - HMPREF1058_RS16415 0.64 +1.2 677,492 - HMPREF1058_RS16415 0.64 -0.9 677,492 - HMPREF1058_RS16415 0.64 -1.0 677,570 - HMPREF1058_RS16415 0.71 +2.0 677,570 - HMPREF1058_RS16415 0.71 +1.7 677,800 + +0.4 677,894 - +0.3 677,894 - +0.1 677,894 - +0.6 677,906 - +0.0 677,919 + -0.5 677,968 - -0.8 678,038 + +0.6 678,038 + -2.5 678,041 + -0.2 678,041 + -1.2 678,041 + +0.1 678,042 - -1.3 678,042 - -0.7 678,082 - -3.1 678,084 - -2.7 678,118 + -1.0 678,248 - HMPREF1058_RS16410 0.15 -1.1 678,248 - HMPREF1058_RS16410 0.15 -2.6 678,438 - HMPREF1058_RS16410 0.31 -1.6 678,442 + HMPREF1058_RS16410 0.31 -1.9 678,442 + HMPREF1058_RS16410 0.31 -2.4 678,495 - HMPREF1058_RS16410 0.36 -3.1 678,552 + HMPREF1058_RS16410 0.41 -1.2 678,552 + HMPREF1058_RS16410 0.41 -1.0 678,644 + HMPREF1058_RS16410 0.48 -1.0 678,645 - HMPREF1058_RS16410 0.48 +0.0 678,650 - HMPREF1058_RS16410 0.49 +1.5 678,697 - HMPREF1058_RS16410 0.53 -0.4 678,798 - HMPREF1058_RS16410 0.61 -1.3 678,874 + HMPREF1058_RS16410 0.67 -1.7 678,874 + HMPREF1058_RS16410 0.67 -1.3 678,875 - HMPREF1058_RS16410 0.67 -1.3 678,875 - HMPREF1058_RS16410 0.67 -0.2 678,879 + HMPREF1058_RS16410 0.68 -1.6 678,880 - HMPREF1058_RS16410 0.68 -0.7 678,930 + HMPREF1058_RS16410 0.72 -0.7 679,002 - HMPREF1058_RS16410 0.78 -1.5 679,079 - HMPREF1058_RS16410 0.84 -0.2 679,079 - HMPREF1058_RS16410 0.84 -0.9 679,094 + HMPREF1058_RS16410 0.85 -1.5 679,215 + -1.3 679,216 - -0.5 679,217 + +1.4 679,217 + -0.2 679,220 - -2.1 679,309 - -2.0 679,309 - +1.5 679,337 + +0.8 679,338 - -0.8 679,356 - -0.1 679,395 + +0.1 679,407 - +1.5 679,421 + -2.4 679,422 - +0.3 679,492 - -0.1 679,535 + HMPREF1058_RS16405 0.20 -1.3 679,556 + HMPREF1058_RS16405 0.24 +0.1 679,556 + HMPREF1058_RS16405 0.24 -0.3 679,557 - HMPREF1058_RS16405 0.24 -0.3 679,567 + HMPREF1058_RS16405 0.27 -1.4 679,580 + HMPREF1058_RS16405 0.30 -0.2 679,582 + HMPREF1058_RS16405 0.30 +0.1 679,592 + HMPREF1058_RS16405 0.32 -0.4 679,638 + HMPREF1058_RS16405 0.43 +1.8 679,639 - HMPREF1058_RS16405 0.43 +0.5 679,740 - HMPREF1058_RS16405 0.66 -0.4 679,863 - -0.2 679,899 + -0.0 679,983 + -0.7 680,063 - HMPREF1058_RS16400 0.14 +0.1 680,085 + HMPREF1058_RS16400 0.18 -0.8 680,085 + HMPREF1058_RS16400 0.18 +1.7 680,086 - HMPREF1058_RS16400 0.18 +0.7 680,123 + HMPREF1058_RS16400 0.25 -0.1 680,180 - HMPREF1058_RS16400 0.35 -1.1 680,204 + HMPREF1058_RS16400 0.39 -1.1
Or see this region's nucleotide sequence