Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10450

Experiment: beta-Cyclodextrin 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10455 and HMPREF1058_RS10450 are separated by 353 nucleotidesHMPREF1058_RS10450 and HMPREF1058_RS10445 overlap by 8 nucleotidesHMPREF1058_RS10445 and HMPREF1058_RS10440 overlap by 4 nucleotidesHMPREF1058_RS10440 and HMPREF1058_RS10435 overlap by 4 nucleotides HMPREF1058_RS10455: HMPREF1058_RS10455 - glycine C-acetyltransferase, at 666,514 to 667,704 _RS10455 HMPREF1058_RS10450: HMPREF1058_RS10450 - hypothetical protein, at 668,058 to 668,645 _RS10450 HMPREF1058_RS10445: HMPREF1058_RS10445 - N-acetylmuramoyl-L-alanine amidase, at 668,638 to 669,237 _RS10445 HMPREF1058_RS10440: HMPREF1058_RS10440 - hypothetical protein, at 669,234 to 669,500 _RS10440 HMPREF1058_RS10435: HMPREF1058_RS10435 - hypothetical protein, at 669,497 to 670,111 _RS10435 Position (kb) 668 669Strain fitness (log2 ratio) -2 -1 0 1 2at 667.158 kb on - strand, within HMPREF1058_RS10455at 667.161 kb on - strand, within HMPREF1058_RS10455at 667.276 kb on - strand, within HMPREF1058_RS10455at 667.287 kb on + strand, within HMPREF1058_RS10455at 667.330 kb on - strand, within HMPREF1058_RS10455at 667.407 kb on + strand, within HMPREF1058_RS10455at 667.556 kb on + strand, within HMPREF1058_RS10455at 667.557 kb on - strand, within HMPREF1058_RS10455at 667.558 kb on + strand, within HMPREF1058_RS10455at 667.558 kb on + strand, within HMPREF1058_RS10455at 667.558 kb on + strand, within HMPREF1058_RS10455at 667.558 kb on + strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.669 kb on - strandat 667.702 kb on + strandat 667.732 kb on - strandat 667.753 kb on - strandat 667.833 kb on - strandat 667.875 kb on + strandat 667.887 kb on + strandat 667.887 kb on + strandat 667.887 kb on + strandat 667.888 kb on - strandat 667.888 kb on - strandat 667.895 kb on + strandat 667.900 kb on - strandat 667.996 kb on - strandat 668.010 kb on + strandat 668.011 kb on - strandat 668.074 kb on - strandat 668.075 kb on + strandat 668.076 kb on - strandat 668.077 kb on + strandat 668.084 kb on + strandat 668.085 kb on - strandat 668.085 kb on - strandat 668.086 kb on + strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.132 kb on + strand, within HMPREF1058_RS10450at 668.177 kb on + strand, within HMPREF1058_RS10450at 668.177 kb on + strand, within HMPREF1058_RS10450at 668.177 kb on + strand, within HMPREF1058_RS10450at 668.178 kb on - strand, within HMPREF1058_RS10450at 668.178 kb on - strand, within HMPREF1058_RS10450at 668.181 kb on + strand, within HMPREF1058_RS10450at 668.181 kb on + strand, within HMPREF1058_RS10450at 668.181 kb on + strand, within HMPREF1058_RS10450at 668.182 kb on - strand, within HMPREF1058_RS10450at 668.182 kb on - strand, within HMPREF1058_RS10450at 668.187 kb on - strand, within HMPREF1058_RS10450at 668.211 kb on + strand, within HMPREF1058_RS10450at 668.216 kb on + strand, within HMPREF1058_RS10450at 668.224 kb on - strand, within HMPREF1058_RS10450at 668.257 kb on - strand, within HMPREF1058_RS10450at 668.313 kb on + strand, within HMPREF1058_RS10450at 668.313 kb on + strand, within HMPREF1058_RS10450at 668.313 kb on + strand, within HMPREF1058_RS10450at 668.319 kb on - strand, within HMPREF1058_RS10450at 668.381 kb on + strand, within HMPREF1058_RS10450at 668.394 kb on + strand, within HMPREF1058_RS10450at 668.394 kb on + strand, within HMPREF1058_RS10450at 668.394 kb on + strand, within HMPREF1058_RS10450at 668.395 kb on - strand, within HMPREF1058_RS10450at 668.597 kb on + strandat 668.597 kb on + strandat 668.658 kb on - strandat 668.658 kb on - strandat 668.658 kb on - strandat 668.869 kb on - strand, within HMPREF1058_RS10445at 668.878 kb on - strand, within HMPREF1058_RS10445at 668.928 kb on + strand, within HMPREF1058_RS10445at 668.928 kb on + strand, within HMPREF1058_RS10445at 668.928 kb on + strand, within HMPREF1058_RS10445at 668.933 kb on - strand, within HMPREF1058_RS10445at 669.020 kb on - strand, within HMPREF1058_RS10445at 669.055 kb on + strand, within HMPREF1058_RS10445at 669.056 kb on - strand, within HMPREF1058_RS10445at 669.056 kb on - strand, within HMPREF1058_RS10445at 669.118 kb on + strand, within HMPREF1058_RS10445at 669.157 kb on + strand, within HMPREF1058_RS10445at 669.226 kb on + strandat 669.238 kb on - strandat 669.348 kb on - strand, within HMPREF1058_RS10440at 669.392 kb on + strand, within HMPREF1058_RS10440at 669.392 kb on + strand, within HMPREF1058_RS10440at 669.393 kb on - strand, within HMPREF1058_RS10440at 669.411 kb on + strand, within HMPREF1058_RS10440at 669.412 kb on - strand, within HMPREF1058_RS10440at 669.446 kb on + strand, within HMPREF1058_RS10440at 669.446 kb on + strand, within HMPREF1058_RS10440at 669.446 kb on + strand, within HMPREF1058_RS10440at 669.500 kb on + strandat 669.531 kb on + strandat 669.531 kb on + strandat 669.531 kb on + strandat 669.531 kb on + strandat 669.532 kb on - strandat 669.532 kb on - strandat 669.532 kb on - strandat 669.532 kb on - strandat 669.532 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 5 mg/ml (C)
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667,158 - HMPREF1058_RS10455 0.54 +0.4
667,161 - HMPREF1058_RS10455 0.54 +0.2
667,276 - HMPREF1058_RS10455 0.64 +0.8
667,287 + HMPREF1058_RS10455 0.65 +0.4
667,330 - HMPREF1058_RS10455 0.69 -0.1
667,407 + HMPREF1058_RS10455 0.75 -0.1
667,556 + HMPREF1058_RS10455 0.87 +0.7
667,557 - HMPREF1058_RS10455 0.88 -1.6
667,558 + HMPREF1058_RS10455 0.88 -0.9
667,558 + HMPREF1058_RS10455 0.88 +0.1
667,558 + HMPREF1058_RS10455 0.88 +0.3
667,558 + HMPREF1058_RS10455 0.88 +0.7
667,559 - HMPREF1058_RS10455 0.88 -0.7
667,559 - HMPREF1058_RS10455 0.88 +0.1
667,559 - HMPREF1058_RS10455 0.88 +1.1
667,559 - HMPREF1058_RS10455 0.88 +0.8
667,559 - HMPREF1058_RS10455 0.88 -0.5
667,669 - -0.4
667,702 + -1.0
667,732 - +1.2
667,753 - -0.8
667,833 - +0.0
667,875 + +1.9
667,887 + +0.4
667,887 + +0.2
667,887 + +0.7
667,888 - -0.4
667,888 - -0.0
667,895 + +0.5
667,900 - +0.6
667,996 - +1.8
668,010 + -0.4
668,011 - -0.3
668,074 - -1.4
668,075 + -0.2
668,076 - +0.1
668,077 + -0.0
668,084 + -1.3
668,085 - -0.2
668,085 - -0.1
668,086 + +2.0
668,087 - -1.0
668,087 - -0.3
668,087 - -0.3
668,087 - +0.3
668,087 - +0.9
668,087 - -0.4
668,132 + HMPREF1058_RS10450 0.13 +0.3
668,177 + HMPREF1058_RS10450 0.20 +0.5
668,177 + HMPREF1058_RS10450 0.20 -0.6
668,177 + HMPREF1058_RS10450 0.20 -0.3
668,178 - HMPREF1058_RS10450 0.20 -0.4
668,178 - HMPREF1058_RS10450 0.20 -0.2
668,181 + HMPREF1058_RS10450 0.21 -0.6
668,181 + HMPREF1058_RS10450 0.21 -2.3
668,181 + HMPREF1058_RS10450 0.21 +0.1
668,182 - HMPREF1058_RS10450 0.21 +1.2
668,182 - HMPREF1058_RS10450 0.21 +0.2
668,187 - HMPREF1058_RS10450 0.22 +1.4
668,211 + HMPREF1058_RS10450 0.26 +0.6
668,216 + HMPREF1058_RS10450 0.27 -0.8
668,224 - HMPREF1058_RS10450 0.28 +0.7
668,257 - HMPREF1058_RS10450 0.34 -0.0
668,313 + HMPREF1058_RS10450 0.43 +0.1
668,313 + HMPREF1058_RS10450 0.43 +0.4
668,313 + HMPREF1058_RS10450 0.43 -1.5
668,319 - HMPREF1058_RS10450 0.44 +0.6
668,381 + HMPREF1058_RS10450 0.55 -0.2
668,394 + HMPREF1058_RS10450 0.57 -0.6
668,394 + HMPREF1058_RS10450 0.57 +1.9
668,394 + HMPREF1058_RS10450 0.57 +0.5
668,395 - HMPREF1058_RS10450 0.57 +2.2
668,597 + -0.2
668,597 + -1.1
668,658 - -0.0
668,658 - -0.3
668,658 - -1.7
668,869 - HMPREF1058_RS10445 0.39 -0.9
668,878 - HMPREF1058_RS10445 0.40 +0.1
668,928 + HMPREF1058_RS10445 0.48 -0.4
668,928 + HMPREF1058_RS10445 0.48 +0.5
668,928 + HMPREF1058_RS10445 0.48 -0.2
668,933 - HMPREF1058_RS10445 0.49 +0.1
669,020 - HMPREF1058_RS10445 0.64 +0.2
669,055 + HMPREF1058_RS10445 0.69 -1.1
669,056 - HMPREF1058_RS10445 0.70 +1.4
669,056 - HMPREF1058_RS10445 0.70 -0.4
669,118 + HMPREF1058_RS10445 0.80 -1.6
669,157 + HMPREF1058_RS10445 0.86 -1.2
669,226 + +0.6
669,238 - +0.2
669,348 - HMPREF1058_RS10440 0.43 -1.0
669,392 + HMPREF1058_RS10440 0.59 -1.6
669,392 + HMPREF1058_RS10440 0.59 -0.6
669,393 - HMPREF1058_RS10440 0.60 -0.9
669,411 + HMPREF1058_RS10440 0.66 +0.5
669,412 - HMPREF1058_RS10440 0.67 -2.0
669,446 + HMPREF1058_RS10440 0.79 -2.1
669,446 + HMPREF1058_RS10440 0.79 -0.4
669,446 + HMPREF1058_RS10440 0.79 +1.4
669,500 + +0.7
669,531 + +0.7
669,531 + -2.3
669,531 + +0.1
669,531 + -0.4
669,532 - -0.8
669,532 - -1.8
669,532 - -1.6
669,532 - -1.8
669,532 - -2.4

Or see this region's nucleotide sequence