Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02907

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02906 and CCNA_02907 are separated by 299 nucleotidesCCNA_02907 and CCNA_02908 are separated by 20 nucleotidesCCNA_02908 and CCNA_02909 are separated by 115 nucleotides CCNA_02906: CCNA_02906 - acyltransferase family protein, at 3,061,621 to 3,062,715 _02906 CCNA_02907: CCNA_02907 - transposase, at 3,063,015 to 3,063,950 _02907 CCNA_02908: CCNA_02908 - HAD superfamily hydrolase, at 3,063,971 to 3,064,684 _02908 CCNA_02909: CCNA_02909 - tetratricopeptide repeat-containing 2OG-Fe(II) oxygenase, at 3,064,800 to 3,066,293 _02909 Position (kb) 3063 3064Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3062.031 kb on + strand, within CCNA_02906at 3062.031 kb on + strand, within CCNA_02906at 3062.031 kb on + strand, within CCNA_02906at 3062.031 kb on + strand, within CCNA_02906at 3062.039 kb on - strand, within CCNA_02906at 3062.050 kb on + strand, within CCNA_02906at 3062.159 kb on + strand, within CCNA_02906at 3062.159 kb on + strand, within CCNA_02906at 3062.164 kb on + strand, within CCNA_02906at 3062.169 kb on + strand, within CCNA_02906at 3062.169 kb on + strand, within CCNA_02906at 3062.172 kb on - strand, within CCNA_02906at 3062.180 kb on + strand, within CCNA_02906at 3062.188 kb on - strand, within CCNA_02906at 3062.188 kb on - strand, within CCNA_02906at 3062.204 kb on + strand, within CCNA_02906at 3062.232 kb on + strand, within CCNA_02906at 3062.236 kb on - strand, within CCNA_02906at 3062.254 kb on + strand, within CCNA_02906at 3062.282 kb on + strand, within CCNA_02906at 3062.282 kb on + strand, within CCNA_02906at 3062.290 kb on - strand, within CCNA_02906at 3062.290 kb on - strand, within CCNA_02906at 3062.334 kb on - strand, within CCNA_02906at 3062.334 kb on - strand, within CCNA_02906at 3062.356 kb on - strand, within CCNA_02906at 3062.370 kb on + strand, within CCNA_02906at 3062.370 kb on + strand, within CCNA_02906at 3062.378 kb on - strand, within CCNA_02906at 3062.389 kb on + strand, within CCNA_02906at 3062.418 kb on + strand, within CCNA_02906at 3062.429 kb on - strand, within CCNA_02906at 3062.439 kb on + strand, within CCNA_02906at 3062.439 kb on + strand, within CCNA_02906at 3062.501 kb on + strand, within CCNA_02906at 3062.536 kb on + strand, within CCNA_02906at 3062.536 kb on + strand, within CCNA_02906at 3062.549 kb on - strand, within CCNA_02906at 3062.551 kb on + strand, within CCNA_02906at 3062.552 kb on + strand, within CCNA_02906at 3062.554 kb on - strand, within CCNA_02906at 3062.560 kb on - strand, within CCNA_02906at 3062.601 kb on + strand, within CCNA_02906at 3062.601 kb on + strand, within CCNA_02906at 3062.601 kb on + strand, within CCNA_02906at 3062.601 kb on + strand, within CCNA_02906at 3062.609 kb on - strandat 3062.609 kb on - strandat 3062.609 kb on - strandat 3062.609 kb on - strandat 3062.609 kb on - strandat 3062.609 kb on - strandat 3062.667 kb on + strandat 3062.667 kb on + strandat 3062.684 kb on - strandat 3062.709 kb on + strandat 3062.709 kb on + strandat 3062.717 kb on - strandat 3062.717 kb on - strandat 3062.717 kb on - strandat 3062.717 kb on - strandat 3062.721 kb on + strandat 3062.721 kb on + strandat 3062.721 kb on + strandat 3062.729 kb on - strandat 3062.752 kb on - strandat 3062.752 kb on - strandat 3062.789 kb on - strandat 3063.970 kb on + strandat 3063.978 kb on - strandat 3063.978 kb on - strandat 3063.996 kb on + strandat 3064.015 kb on - strandat 3064.015 kb on - strandat 3064.018 kb on + strandat 3064.025 kb on - strandat 3064.033 kb on + strandat 3064.033 kb on + strandat 3064.033 kb on + strandat 3064.046 kb on - strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strandat 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.052 kb on + strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.060 kb on - strand, within CCNA_02908at 3064.093 kb on - strand, within CCNA_02908at 3064.141 kb on + strand, within CCNA_02908at 3064.141 kb on + strand, within CCNA_02908at 3064.149 kb on - strand, within CCNA_02908at 3064.180 kb on - strand, within CCNA_02908at 3064.273 kb on - strand, within CCNA_02908at 3064.383 kb on - strand, within CCNA_02908at 3064.383 kb on - strand, within CCNA_02908at 3064.394 kb on + strand, within CCNA_02908at 3064.415 kb on + strand, within CCNA_02908at 3064.415 kb on + strand, within CCNA_02908at 3064.447 kb on - strand, within CCNA_02908at 3064.458 kb on - strand, within CCNA_02908at 3064.458 kb on - strand, within CCNA_02908at 3064.463 kb on + strand, within CCNA_02908at 3064.463 kb on + strand, within CCNA_02908at 3064.463 kb on + strand, within CCNA_02908at 3064.470 kb on - strand, within CCNA_02908at 3064.471 kb on - strand, within CCNA_02908at 3064.479 kb on + strand, within CCNA_02908at 3064.479 kb on + strand, within CCNA_02908at 3064.487 kb on - strand, within CCNA_02908at 3064.489 kb on + strand, within CCNA_02908at 3064.490 kb on + strand, within CCNA_02908at 3064.497 kb on - strand, within CCNA_02908at 3064.497 kb on - strand, within CCNA_02908at 3064.498 kb on + strand, within CCNA_02908at 3064.506 kb on - strand, within CCNA_02908at 3064.511 kb on + strand, within CCNA_02908at 3064.569 kb on + strand, within CCNA_02908at 3064.599 kb on - strand, within CCNA_02908at 3064.599 kb on - strand, within CCNA_02908at 3064.615 kb on + strandat 3064.704 kb on + strandat 3064.704 kb on + strandat 3064.709 kb on + strandat 3064.750 kb on - strandat 3064.772 kb on - strandat 3064.777 kb on - strandat 3064.818 kb on + strandat 3064.818 kb on + strandat 3064.823 kb on + strandat 3064.831 kb on - strandat 3064.831 kb on - strandat 3064.833 kb on + strandat 3064.861 kb on + strandat 3064.861 kb on + strandat 3064.892 kb on + strandat 3064.927 kb on - strandat 3064.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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3,062,031 + CCNA_02906 0.37 -0.5
3,062,031 + CCNA_02906 0.37 -0.9
3,062,031 + CCNA_02906 0.37 +0.4
3,062,031 + CCNA_02906 0.37 +0.6
3,062,039 - CCNA_02906 0.38 -0.4
3,062,050 + CCNA_02906 0.39 +0.4
3,062,159 + CCNA_02906 0.49 +1.4
3,062,159 + CCNA_02906 0.49 +1.3
3,062,164 + CCNA_02906 0.50 +0.6
3,062,169 + CCNA_02906 0.50 +0.6
3,062,169 + CCNA_02906 0.50 +1.8
3,062,172 - CCNA_02906 0.50 -0.1
3,062,180 + CCNA_02906 0.51 +2.6
3,062,188 - CCNA_02906 0.52 -1.5
3,062,188 - CCNA_02906 0.52 -1.1
3,062,204 + CCNA_02906 0.53 +1.3
3,062,232 + CCNA_02906 0.56 +1.8
3,062,236 - CCNA_02906 0.56 -0.4
3,062,254 + CCNA_02906 0.58 +1.0
3,062,282 + CCNA_02906 0.60 +0.5
3,062,282 + CCNA_02906 0.60 +1.4
3,062,290 - CCNA_02906 0.61 -0.3
3,062,290 - CCNA_02906 0.61 -0.1
3,062,334 - CCNA_02906 0.65 -1.1
3,062,334 - CCNA_02906 0.65 -1.4
3,062,356 - CCNA_02906 0.67 +1.8
3,062,370 + CCNA_02906 0.68 +0.3
3,062,370 + CCNA_02906 0.68 +2.6
3,062,378 - CCNA_02906 0.69 -1.7
3,062,389 + CCNA_02906 0.70 +0.4
3,062,418 + CCNA_02906 0.73 +0.7
3,062,429 - CCNA_02906 0.74 -1.9
3,062,439 + CCNA_02906 0.75 +1.0
3,062,439 + CCNA_02906 0.75 +1.8
3,062,501 + CCNA_02906 0.80 +0.4
3,062,536 + CCNA_02906 0.84 +2.2
3,062,536 + CCNA_02906 0.84 +0.1
3,062,549 - CCNA_02906 0.85 -2.1
3,062,551 + CCNA_02906 0.85 +0.6
3,062,552 + CCNA_02906 0.85 -0.2
3,062,554 - CCNA_02906 0.85 -1.1
3,062,560 - CCNA_02906 0.86 -1.0
3,062,601 + CCNA_02906 0.89 -0.4
3,062,601 + CCNA_02906 0.89 -0.8
3,062,601 + CCNA_02906 0.89 +0.5
3,062,601 + CCNA_02906 0.89 +0.6
3,062,609 - -2.2
3,062,609 - -1.6
3,062,609 - +1.1
3,062,609 - -1.6
3,062,609 - -0.1
3,062,609 - -2.1
3,062,667 + +1.8
3,062,667 + +0.8
3,062,684 - +0.6
3,062,709 + +1.3
3,062,709 + +1.3
3,062,717 - -0.1
3,062,717 - -0.5
3,062,717 - +0.1
3,062,717 - +0.4
3,062,721 + +1.3
3,062,721 + +1.6
3,062,721 + +1.7
3,062,729 - -0.2
3,062,752 - +0.5
3,062,752 - +0.0
3,062,789 - +0.3
3,063,970 + +1.5
3,063,978 - +1.9
3,063,978 - -0.1
3,063,996 + +2.5
3,064,015 - +1.6
3,064,015 - +2.4
3,064,018 + -0.2
3,064,025 - +1.6
3,064,033 + -0.6
3,064,033 + -1.1
3,064,033 + -1.0
3,064,046 - CCNA_02908 0.11 -0.7
3,064,052 + CCNA_02908 0.11 -0.4
3,064,052 + CCNA_02908 0.11 -2.0
3,064,052 + CCNA_02908 0.11 -0.5
3,064,052 + CCNA_02908 0.11 -0.8
3,064,052 + CCNA_02908 0.11 -1.5
3,064,052 + CCNA_02908 0.11 -1.6
3,064,052 + CCNA_02908 0.11 -1.2
3,064,052 + CCNA_02908 0.11 +0.4
3,064,052 + CCNA_02908 0.11 +0.9
3,064,052 + CCNA_02908 0.11 +0.4
3,064,052 + CCNA_02908 0.11 -0.3
3,064,052 + CCNA_02908 0.11 +1.9
3,064,052 + CCNA_02908 0.11 +0.5
3,064,052 + +1.4
3,064,052 + CCNA_02908 0.11 -0.5
3,064,052 + CCNA_02908 0.11 +0.9
3,064,052 + CCNA_02908 0.11 +1.2
3,064,052 + CCNA_02908 0.11 +0.1
3,064,060 - CCNA_02908 0.12 +0.7
3,064,060 - CCNA_02908 0.12 +1.4
3,064,060 - CCNA_02908 0.12 +0.1
3,064,060 - CCNA_02908 0.12 +0.6
3,064,060 - CCNA_02908 0.12 +0.5
3,064,060 - CCNA_02908 0.12 +0.8
3,064,060 - CCNA_02908 0.12 +0.9
3,064,060 - CCNA_02908 0.12 -0.0
3,064,060 - CCNA_02908 0.12 +0.5
3,064,060 - CCNA_02908 0.12 +0.7
3,064,060 - CCNA_02908 0.12 +0.2
3,064,060 - CCNA_02908 0.12 +1.1
3,064,060 - CCNA_02908 0.12 +2.4
3,064,060 - CCNA_02908 0.12 +1.1
3,064,060 - CCNA_02908 0.12 +1.1
3,064,060 - CCNA_02908 0.12 +1.9
3,064,060 - CCNA_02908 0.12 +0.7
3,064,093 - CCNA_02908 0.17 +0.5
3,064,141 + CCNA_02908 0.24 +0.1
3,064,141 + CCNA_02908 0.24 -1.4
3,064,149 - CCNA_02908 0.25 +1.6
3,064,180 - CCNA_02908 0.29 +1.4
3,064,273 - CCNA_02908 0.42 -2.5
3,064,383 - CCNA_02908 0.58 -1.9
3,064,383 - CCNA_02908 0.58 +0.3
3,064,394 + CCNA_02908 0.59 -2.0
3,064,415 + CCNA_02908 0.62 -1.1
3,064,415 + CCNA_02908 0.62 -0.9
3,064,447 - CCNA_02908 0.67 -0.2
3,064,458 - CCNA_02908 0.68 +1.9
3,064,458 - CCNA_02908 0.68 +1.2
3,064,463 + CCNA_02908 0.69 -1.4
3,064,463 + CCNA_02908 0.69 -0.1
3,064,463 + CCNA_02908 0.69 -1.0
3,064,470 - CCNA_02908 0.70 +1.7
3,064,471 - CCNA_02908 0.70 +1.3
3,064,479 + CCNA_02908 0.71 +0.4
3,064,479 + CCNA_02908 0.71 -0.6
3,064,487 - CCNA_02908 0.72 +0.8
3,064,489 + CCNA_02908 0.73 +0.3
3,064,490 + CCNA_02908 0.73 +1.5
3,064,497 - CCNA_02908 0.74 +0.1
3,064,497 - CCNA_02908 0.74 +2.9
3,064,498 + CCNA_02908 0.74 -0.1
3,064,506 - CCNA_02908 0.75 -0.1
3,064,511 + CCNA_02908 0.76 +0.9
3,064,569 + CCNA_02908 0.84 +0.7
3,064,599 - CCNA_02908 0.88 +0.8
3,064,599 - CCNA_02908 0.88 +1.6
3,064,615 + +0.7
3,064,704 + +4.3
3,064,704 + -0.8
3,064,709 + -0.1
3,064,750 - -0.6
3,064,772 - -0.1
3,064,777 - +0.0
3,064,818 + +0.1
3,064,818 + -0.3
3,064,823 + -0.6
3,064,831 - -0.9
3,064,831 - -0.2
3,064,833 + +1.5
3,064,861 + +0.6
3,064,861 + +0.5
3,064,892 + -0.6
3,064,927 - +1.5
3,064,932 - -2.2

Or see this region's nucleotide sequence