Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02657 and CCNA_02658 are separated by 2 nucleotides CCNA_02658 and CCNA_02659 are separated by 173 nucleotides CCNA_02659 and CCNA_02660 are separated by 50 nucleotides CCNA_02660 and CCNA_02661 are separated by 71 nucleotides
CCNA_02657: CCNA_02657 - hypothetical protein, at 2,810,193 to 2,810,789
_02657
CCNA_02658: CCNA_02658 - 3-hydroxybutyryl-CoA dehydratase, at 2,810,792 to 2,811,589
_02658
CCNA_02659: CCNA_02659 - two-component receiver domain protein, at 2,811,763 to 2,812,125
_02659
CCNA_02660: CCNA_02660 - pyridoxamine 5'-phosphate oxidase family protein, at 2,812,176 to 2,812,790
_02660
CCNA_02661: CCNA_02661 - M16 family peptidase, at 2,812,862 to 2,815,669
_02661
Position (kb)
2811
2812
2813 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2810.777 kb on + strand at 2810.787 kb on - strand at 2810.801 kb on + strand at 2810.806 kb on + strand at 2810.806 kb on + strand at 2810.806 kb on + strand at 2810.806 kb on + strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.809 kb on - strand at 2810.809 kb on - strand at 2810.841 kb on - strand at 2810.904 kb on - strand, within CCNA_02658 at 2810.946 kb on + strand, within CCNA_02658 at 2810.954 kb on - strand, within CCNA_02658 at 2810.996 kb on - strand, within CCNA_02658 at 2811.000 kb on - strand, within CCNA_02658 at 2811.001 kb on - strand, within CCNA_02658 at 2811.057 kb on + strand, within CCNA_02658 at 2811.065 kb on - strand, within CCNA_02658 at 2811.107 kb on + strand, within CCNA_02658 at 2811.120 kb on - strand, within CCNA_02658 at 2811.127 kb on + strand, within CCNA_02658 at 2811.240 kb on - strand, within CCNA_02658 at 2811.268 kb on - strand, within CCNA_02658 at 2811.268 kb on - strand, within CCNA_02658 at 2811.428 kb on + strand, within CCNA_02658 at 2811.446 kb on - strand, within CCNA_02658 at 2811.495 kb on + strand, within CCNA_02658 at 2811.516 kb on + strand at 2811.521 kb on + strand at 2811.529 kb on - strand at 2811.601 kb on + strand at 2811.643 kb on + strand at 2811.643 kb on + strand at 2811.711 kb on + strand at 2811.780 kb on + strand at 2811.780 kb on + strand at 2811.836 kb on - strand, within CCNA_02659 at 2811.837 kb on - strand, within CCNA_02659 at 2811.847 kb on + strand, within CCNA_02659 at 2811.852 kb on + strand, within CCNA_02659 at 2811.899 kb on + strand, within CCNA_02659 at 2811.899 kb on + strand, within CCNA_02659 at 2811.907 kb on - strand, within CCNA_02659 at 2811.907 kb on - strand, within CCNA_02659 at 2811.907 kb on - strand, within CCNA_02659 at 2811.907 kb on - strand, within CCNA_02659 at 2811.917 kb on - strand, within CCNA_02659 at 2811.932 kb on + strand, within CCNA_02659 at 2811.956 kb on + strand, within CCNA_02659 at 2811.961 kb on + strand, within CCNA_02659 at 2811.969 kb on - strand, within CCNA_02659 at 2811.969 kb on - strand, within CCNA_02659 at 2811.969 kb on - strand, within CCNA_02659 at 2812.001 kb on - strand, within CCNA_02659 at 2812.016 kb on + strand, within CCNA_02659 at 2812.019 kb on - strand, within CCNA_02659 at 2812.028 kb on + strand, within CCNA_02659 at 2812.038 kb on + strand, within CCNA_02659 at 2812.049 kb on + strand, within CCNA_02659 at 2812.050 kb on + strand, within CCNA_02659 at 2812.063 kb on + strand, within CCNA_02659 at 2812.068 kb on - strand, within CCNA_02659 at 2812.086 kb on + strand, within CCNA_02659 at 2812.093 kb on + strand at 2812.093 kb on + strand at 2812.093 kb on + strand at 2812.101 kb on - strand at 2812.156 kb on - strand at 2812.156 kb on - strand at 2812.167 kb on - strand at 2812.192 kb on - strand at 2812.209 kb on + strand at 2812.209 kb on + strand at 2812.271 kb on + strand, within CCNA_02660 at 2812.279 kb on - strand, within CCNA_02660 at 2812.286 kb on + strand, within CCNA_02660 at 2812.294 kb on - strand, within CCNA_02660 at 2812.294 kb on - strand, within CCNA_02660 at 2812.316 kb on - strand, within CCNA_02660 at 2812.321 kb on - strand, within CCNA_02660 at 2812.324 kb on + strand, within CCNA_02660 at 2812.326 kb on + strand, within CCNA_02660 at 2812.340 kb on - strand, within CCNA_02660 at 2812.340 kb on - strand, within CCNA_02660 at 2812.340 kb on - strand, within CCNA_02660 at 2812.340 kb on - strand, within CCNA_02660 at 2812.340 kb on - strand, within CCNA_02660 at 2812.364 kb on - strand, within CCNA_02660 at 2812.374 kb on - strand, within CCNA_02660 at 2812.393 kb on + strand, within CCNA_02660 at 2812.393 kb on + strand, within CCNA_02660 at 2812.393 kb on + strand, within CCNA_02660 at 2812.393 kb on + strand, within CCNA_02660 at 2812.401 kb on - strand, within CCNA_02660 at 2812.401 kb on - strand, within CCNA_02660 at 2812.519 kb on + strand, within CCNA_02660 at 2812.524 kb on + strand, within CCNA_02660 at 2812.524 kb on + strand, within CCNA_02660 at 2812.532 kb on - strand, within CCNA_02660 at 2812.532 kb on - strand, within CCNA_02660 at 2812.534 kb on - strand, within CCNA_02660 at 2812.545 kb on + strand, within CCNA_02660 at 2812.547 kb on + strand, within CCNA_02660 at 2812.547 kb on + strand, within CCNA_02660 at 2812.547 kb on + strand, within CCNA_02660 at 2812.547 kb on + strand, within CCNA_02660 at 2812.555 kb on - strand, within CCNA_02660 at 2812.610 kb on + strand, within CCNA_02660 at 2812.677 kb on + strand, within CCNA_02660 at 2812.685 kb on - strand, within CCNA_02660 at 2812.707 kb on - strand, within CCNA_02660 at 2812.751 kb on - strand at 2812.751 kb on - strand at 2812.787 kb on + strand at 2812.850 kb on - strand at 2812.857 kb on + strand at 2812.857 kb on - strand at 2812.867 kb on - strand at 2812.963 kb on + strand at 2812.963 kb on + strand at 2812.963 kb on + strand at 2812.978 kb on + strand at 2812.996 kb on + strand at 2813.026 kb on - strand at 2813.049 kb on + strand at 2813.067 kb on - strand at 2813.067 kb on - strand at 2813.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 2,810,777 + -0.0 2,810,787 - +0.0 2,810,801 + -0.1 2,810,806 + +2.8 2,810,806 + +2.1 2,810,806 + +2.2 2,810,806 + +2.4 2,810,807 - +0.6 2,810,807 - +1.7 2,810,807 - +1.2 2,810,807 - +0.7 2,810,807 - +0.8 2,810,807 - +0.7 2,810,809 - +1.6 2,810,809 - +0.1 2,810,841 - +0.9 2,810,904 - CCNA_02658 0.14 +0.1 2,810,946 + CCNA_02658 0.19 -2.2 2,810,954 - CCNA_02658 0.20 +0.6 2,810,996 - CCNA_02658 0.26 -0.4 2,811,000 - CCNA_02658 0.26 -1.2 2,811,001 - CCNA_02658 0.26 -1.1 2,811,057 + CCNA_02658 0.33 -1.9 2,811,065 - CCNA_02658 0.34 -1.8 2,811,107 + CCNA_02658 0.39 -0.6 2,811,120 - CCNA_02658 0.41 -2.0 2,811,127 + CCNA_02658 0.42 -0.4 2,811,240 - CCNA_02658 0.56 -0.6 2,811,268 - CCNA_02658 0.60 -1.9 2,811,268 - CCNA_02658 0.60 -0.9 2,811,428 + CCNA_02658 0.80 -0.9 2,811,446 - CCNA_02658 0.82 -0.9 2,811,495 + CCNA_02658 0.88 -1.7 2,811,516 + +0.3 2,811,521 + -1.6 2,811,529 - +0.3 2,811,601 + -0.7 2,811,643 + -1.0 2,811,643 + -1.3 2,811,711 + +1.3 2,811,780 + +0.0 2,811,780 + +3.6 2,811,836 - CCNA_02659 0.20 -0.5 2,811,837 - CCNA_02659 0.20 -2.7 2,811,847 + CCNA_02659 0.23 +1.2 2,811,852 + CCNA_02659 0.25 +0.4 2,811,899 + CCNA_02659 0.37 +1.3 2,811,899 + CCNA_02659 0.37 +1.1 2,811,907 - CCNA_02659 0.40 -1.4 2,811,907 - CCNA_02659 0.40 -2.6 2,811,907 - CCNA_02659 0.40 +0.6 2,811,907 - CCNA_02659 0.40 -1.5 2,811,917 - CCNA_02659 0.42 -0.9 2,811,932 + CCNA_02659 0.47 +1.1 2,811,956 + CCNA_02659 0.53 +1.5 2,811,961 + CCNA_02659 0.55 +0.8 2,811,969 - CCNA_02659 0.57 -1.0 2,811,969 - CCNA_02659 0.57 -1.6 2,811,969 - CCNA_02659 0.57 -1.0 2,812,001 - CCNA_02659 0.66 +2.3 2,812,016 + CCNA_02659 0.70 +0.4 2,812,019 - CCNA_02659 0.71 +2.0 2,812,028 + CCNA_02659 0.73 +0.7 2,812,038 + CCNA_02659 0.76 +1.5 2,812,049 + CCNA_02659 0.79 +1.5 2,812,050 + CCNA_02659 0.79 +0.6 2,812,063 + CCNA_02659 0.83 +1.0 2,812,068 - CCNA_02659 0.84 -0.7 2,812,086 + CCNA_02659 0.89 +1.4 2,812,093 + +0.5 2,812,093 + +1.8 2,812,093 + +0.7 2,812,101 - +0.3 2,812,156 - -1.9 2,812,156 - -0.1 2,812,167 - -0.5 2,812,192 - +0.5 2,812,209 + +1.3 2,812,209 + -0.5 2,812,271 + CCNA_02660 0.15 -0.9 2,812,279 - CCNA_02660 0.17 -3.7 2,812,286 + CCNA_02660 0.18 -0.4 2,812,294 - CCNA_02660 0.19 -1.9 2,812,294 - CCNA_02660 0.19 -0.8 2,812,316 - CCNA_02660 0.23 -0.6 2,812,321 - CCNA_02660 0.24 -1.7 2,812,324 + CCNA_02660 0.24 -3.3 2,812,326 + CCNA_02660 0.24 +0.1 2,812,340 - CCNA_02660 0.27 -0.3 2,812,340 - CCNA_02660 0.27 -1.3 2,812,340 - CCNA_02660 0.27 +0.6 2,812,340 - CCNA_02660 0.27 -0.8 2,812,340 - CCNA_02660 0.27 -0.5 2,812,364 - CCNA_02660 0.31 -1.5 2,812,374 - CCNA_02660 0.32 -0.3 2,812,393 + CCNA_02660 0.35 -1.3 2,812,393 + CCNA_02660 0.35 +1.6 2,812,393 + CCNA_02660 0.35 +0.5 2,812,393 + CCNA_02660 0.35 -0.4 2,812,401 - CCNA_02660 0.37 -0.2 2,812,401 - CCNA_02660 0.37 -2.2 2,812,519 + CCNA_02660 0.56 +1.4 2,812,524 + CCNA_02660 0.57 +0.8 2,812,524 + CCNA_02660 0.57 +0.1 2,812,532 - CCNA_02660 0.58 -0.8 2,812,532 - CCNA_02660 0.58 -0.2 2,812,534 - CCNA_02660 0.58 -1.1 2,812,545 + CCNA_02660 0.60 +0.6 2,812,547 + CCNA_02660 0.60 +0.9 2,812,547 + CCNA_02660 0.60 +0.5 2,812,547 + CCNA_02660 0.60 +1.3 2,812,547 + CCNA_02660 0.60 +2.6 2,812,555 - CCNA_02660 0.62 -1.1 2,812,610 + CCNA_02660 0.71 +1.0 2,812,677 + CCNA_02660 0.81 -1.9 2,812,685 - CCNA_02660 0.83 -0.4 2,812,707 - CCNA_02660 0.86 +0.8 2,812,751 - -0.3 2,812,751 - -0.9 2,812,787 + +0.2 2,812,850 - +0.6 2,812,857 + -0.9 2,812,857 - -0.3 2,812,867 - -2.2 2,812,963 + +1.8 2,812,963 + -1.2 2,812,963 + +0.3 2,812,978 + +2.0 2,812,996 + +1.8 2,813,026 - -1.2 2,813,049 + +0.3 2,813,067 - +0.1 2,813,067 - -1.4 2,813,075 - +0.8
Or see this region's nucleotide sequence