Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02053

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02052 and CCNA_02053 are separated by 277 nucleotidesCCNA_02053 and CCNA_02054 are separated by 272 nucleotides CCNA_02052: CCNA_02052 - topoisomerase IV subunit B, at 2,200,445 to 2,202,532 _02052 CCNA_02053: CCNA_02053 - hypothetical protein, at 2,202,810 to 2,203,127 _02053 CCNA_02054: CCNA_02054 - methylmalonyl-CoA carboxylase, carboxyltransferase subunit, at 2,203,400 to 2,204,932 _02054 Position (kb) 2202 2203 2204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2202.555 kb on - strandat 2202.564 kb on - strandat 2202.572 kb on + strandat 2202.629 kb on + strandat 2202.641 kb on + strandat 2202.642 kb on + strandat 2202.693 kb on + strandat 2202.733 kb on - strandat 2202.758 kb on - strandat 2202.832 kb on + strandat 2202.840 kb on - strandat 2202.840 kb on - strandat 2202.881 kb on - strand, within CCNA_02053at 2202.883 kb on + strand, within CCNA_02053at 2202.883 kb on + strand, within CCNA_02053at 2202.883 kb on + strand, within CCNA_02053at 2202.883 kb on + strand, within CCNA_02053at 2202.883 kb on + strand, within CCNA_02053at 2202.883 kb on + strand, within CCNA_02053at 2202.883 kb on + strand, within CCNA_02053at 2202.954 kb on - strand, within CCNA_02053at 2203.119 kb on + strandat 2203.189 kb on + strandat 2203.226 kb on - strandat 2203.228 kb on + strandat 2203.236 kb on - strandat 2203.351 kb on + strandat 2203.357 kb on - strandat 2203.359 kb on - strandat 2203.378 kb on + strandat 2203.386 kb on - strandat 2203.390 kb on + strandat 2203.439 kb on - strandat 2203.570 kb on - strand, within CCNA_02054at 2203.679 kb on - strand, within CCNA_02054at 2203.679 kb on - strand, within CCNA_02054at 2203.684 kb on - strand, within CCNA_02054at 2203.706 kb on + strand, within CCNA_02054at 2203.711 kb on + strand, within CCNA_02054at 2203.711 kb on + strand, within CCNA_02054at 2203.732 kb on - strand, within CCNA_02054at 2203.778 kb on + strand, within CCNA_02054at 2203.808 kb on - strand, within CCNA_02054at 2203.808 kb on - strand, within CCNA_02054at 2203.852 kb on - strand, within CCNA_02054at 2203.887 kb on + strand, within CCNA_02054at 2203.887 kb on + strand, within CCNA_02054at 2203.904 kb on - strand, within CCNA_02054at 2203.951 kb on - strand, within CCNA_02054at 2204.075 kb on - strand, within CCNA_02054at 2204.075 kb on - strand, within CCNA_02054at 2204.088 kb on + strand, within CCNA_02054at 2204.109 kb on + strand, within CCNA_02054at 2204.109 kb on + strand, within CCNA_02054at 2204.113 kb on + strand, within CCNA_02054at 2204.113 kb on + strand, within CCNA_02054at 2204.117 kb on - strand, within CCNA_02054at 2204.121 kb on - strand, within CCNA_02054at 2204.121 kb on - strand, within CCNA_02054

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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2,202,555 - -0.5
2,202,564 - -0.4
2,202,572 + +1.2
2,202,629 + +2.0
2,202,641 + +1.4
2,202,642 + +0.9
2,202,693 + +1.7
2,202,733 - +0.1
2,202,758 - +1.8
2,202,832 + +1.0
2,202,840 - -0.6
2,202,840 - +0.6
2,202,881 - CCNA_02053 0.22 +1.0
2,202,883 + CCNA_02053 0.23 +0.8
2,202,883 + CCNA_02053 0.23 +1.1
2,202,883 + CCNA_02053 0.23 +0.7
2,202,883 + CCNA_02053 0.23 +0.3
2,202,883 + CCNA_02053 0.23 +0.3
2,202,883 + CCNA_02053 0.23 +0.9
2,202,883 + CCNA_02053 0.23 -0.1
2,202,954 - CCNA_02053 0.45 +1.3
2,203,119 + -1.1
2,203,189 + +0.9
2,203,226 - +1.7
2,203,228 + +1.3
2,203,236 - +1.3
2,203,351 + -1.4
2,203,357 - +1.8
2,203,359 - +2.0
2,203,378 + -0.9
2,203,386 - +2.2
2,203,390 + -1.9
2,203,439 - +0.8
2,203,570 - CCNA_02054 0.11 +3.4
2,203,679 - CCNA_02054 0.18 -0.3
2,203,679 - CCNA_02054 0.18 -0.0
2,203,684 - CCNA_02054 0.19 -0.8
2,203,706 + CCNA_02054 0.20 -1.7
2,203,711 + CCNA_02054 0.20 -1.7
2,203,711 + CCNA_02054 0.20 -2.2
2,203,732 - CCNA_02054 0.22 +0.7
2,203,778 + CCNA_02054 0.25 -0.3
2,203,808 - CCNA_02054 0.27 -1.0
2,203,808 - CCNA_02054 0.27 +0.0
2,203,852 - CCNA_02054 0.29 -1.2
2,203,887 + CCNA_02054 0.32 -1.3
2,203,887 + CCNA_02054 0.32 -3.0
2,203,904 - CCNA_02054 0.33 +0.5
2,203,951 - CCNA_02054 0.36 -0.2
2,204,075 - CCNA_02054 0.44 +0.1
2,204,075 - CCNA_02054 0.44 -0.4
2,204,088 + CCNA_02054 0.45 -3.0
2,204,109 + CCNA_02054 0.46 -1.3
2,204,109 + CCNA_02054 0.46 -0.3
2,204,113 + CCNA_02054 0.47 -2.5
2,204,113 + CCNA_02054 0.47 -0.8
2,204,117 - CCNA_02054 0.47 +0.4
2,204,121 - CCNA_02054 0.47 +1.8
2,204,121 - CCNA_02054 0.47 +1.8

Or see this region's nucleotide sequence