Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01779

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01778 and CCNA_01779 are separated by 32 nucleotidesCCNA_01779 and CCNA_01780 are separated by 155 nucleotides CCNA_01778: CCNA_01778 - penicillin-binding protein, at 1,905,204 to 1,906,496 _01778 CCNA_01779: CCNA_01779 - hypothetical protein, at 1,906,529 to 1,906,798 _01779 CCNA_01780: CCNA_01780 - exopolyphosphatase, at 1,906,954 to 1,908,453 _01780 Position (kb) 1906 1907Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1905.566 kb on - strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.704 kb on - strand, within CCNA_01778at 1905.725 kb on + strand, within CCNA_01778at 1905.727 kb on + strand, within CCNA_01778at 1905.740 kb on - strand, within CCNA_01778at 1905.761 kb on + strand, within CCNA_01778at 1905.827 kb on + strand, within CCNA_01778at 1905.854 kb on - strand, within CCNA_01778at 1905.882 kb on + strand, within CCNA_01778at 1905.887 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.898 kb on + strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.907 kb on + strand, within CCNA_01778at 1905.915 kb on - strand, within CCNA_01778at 1905.915 kb on - strandat 1905.932 kb on + strand, within CCNA_01778at 1905.983 kb on + strand, within CCNA_01778at 1906.005 kb on - strand, within CCNA_01778at 1906.011 kb on - strand, within CCNA_01778at 1906.019 kb on - strand, within CCNA_01778at 1906.028 kb on + strand, within CCNA_01778at 1906.134 kb on + strand, within CCNA_01778at 1906.159 kb on + strand, within CCNA_01778at 1906.159 kb on + strand, within CCNA_01778at 1906.161 kb on + strand, within CCNA_01778at 1906.200 kb on + strand, within CCNA_01778at 1906.202 kb on + strand, within CCNA_01778at 1906.220 kb on + strand, within CCNA_01778at 1906.220 kb on + strand, within CCNA_01778at 1906.220 kb on + strand, within CCNA_01778at 1906.227 kb on + strand, within CCNA_01778at 1906.241 kb on - strand, within CCNA_01778at 1906.248 kb on - strand, within CCNA_01778at 1906.253 kb on - strand, within CCNA_01778at 1906.270 kb on + strand, within CCNA_01778at 1906.351 kb on + strand, within CCNA_01778at 1906.353 kb on + strand, within CCNA_01778at 1906.359 kb on + strand, within CCNA_01778at 1906.367 kb on - strandat 1906.369 kb on - strandat 1906.485 kb on - strandat 1906.500 kb on + strandat 1906.562 kb on - strand, within CCNA_01779at 1906.567 kb on + strand, within CCNA_01779at 1906.576 kb on - strand, within CCNA_01779at 1906.627 kb on - strand, within CCNA_01779at 1906.666 kb on - strand, within CCNA_01779at 1906.694 kb on - strand, within CCNA_01779at 1906.694 kb on - strand, within CCNA_01779at 1906.699 kb on - strand, within CCNA_01779at 1906.746 kb on + strand, within CCNA_01779at 1906.773 kb on - strandat 1906.779 kb on + strandat 1906.787 kb on - strandat 1906.802 kb on + strandat 1906.802 kb on + strandat 1906.808 kb on - strandat 1906.841 kb on + strandat 1906.843 kb on - strandat 1906.961 kb on + strandat 1906.974 kb on - strandat 1906.974 kb on - strandat 1907.052 kb on + strandat 1907.089 kb on - strandat 1907.109 kb on + strand, within CCNA_01780at 1907.109 kb on - strand, within CCNA_01780at 1907.117 kb on - strand, within CCNA_01780at 1907.186 kb on + strand, within CCNA_01780at 1907.189 kb on - strand, within CCNA_01780at 1907.209 kb on + strand, within CCNA_01780at 1907.284 kb on + strand, within CCNA_01780at 1907.306 kb on + strand, within CCNA_01780at 1907.306 kb on + strand, within CCNA_01780at 1907.336 kb on - strand, within CCNA_01780at 1907.430 kb on + strand, within CCNA_01780at 1907.498 kb on - strand, within CCNA_01780at 1907.512 kb on + strand, within CCNA_01780at 1907.520 kb on - strand, within CCNA_01780at 1907.521 kb on - strand, within CCNA_01780at 1907.555 kb on + strand, within CCNA_01780at 1907.563 kb on - strand, within CCNA_01780at 1907.648 kb on + strand, within CCNA_01780at 1907.656 kb on - strand, within CCNA_01780at 1907.661 kb on - strandat 1907.694 kb on + strand, within CCNA_01780at 1907.705 kb on + strand, within CCNA_01780at 1907.713 kb on - strand, within CCNA_01780at 1907.737 kb on + strand, within CCNA_01780at 1907.737 kb on + strand, within CCNA_01780at 1907.748 kb on + strand, within CCNA_01780

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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1,905,566 - CCNA_01778 0.28 +1.2
1,905,667 + CCNA_01778 0.36 -0.4
1,905,667 + CCNA_01778 0.36 +0.1
1,905,667 + CCNA_01778 0.36 +0.5
1,905,667 + CCNA_01778 0.36 +1.0
1,905,667 + CCNA_01778 0.36 -0.0
1,905,667 + CCNA_01778 0.36 -0.1
1,905,675 - CCNA_01778 0.36 +0.0
1,905,675 - CCNA_01778 0.36 -0.8
1,905,704 - CCNA_01778 0.39 -0.4
1,905,725 + CCNA_01778 0.40 +0.6
1,905,727 + CCNA_01778 0.40 +1.5
1,905,740 - CCNA_01778 0.41 -0.4
1,905,761 + CCNA_01778 0.43 +1.7
1,905,827 + CCNA_01778 0.48 +2.4
1,905,854 - CCNA_01778 0.50 -1.2
1,905,882 + CCNA_01778 0.52 +1.2
1,905,887 + CCNA_01778 0.53 +3.1
1,905,897 + CCNA_01778 0.54 +0.7
1,905,897 + CCNA_01778 0.54 +1.6
1,905,897 + CCNA_01778 0.54 +1.9
1,905,897 + CCNA_01778 0.54 +1.4
1,905,897 + CCNA_01778 0.54 +1.4
1,905,897 + CCNA_01778 0.54 +1.5
1,905,897 + CCNA_01778 0.54 +0.8
1,905,897 + CCNA_01778 0.54 +1.5
1,905,897 + CCNA_01778 0.54 +1.3
1,905,897 + CCNA_01778 0.54 +1.3
1,905,898 + CCNA_01778 0.54 +1.1
1,905,905 - CCNA_01778 0.54 +0.5
1,905,905 - CCNA_01778 0.54 +0.5
1,905,905 - CCNA_01778 0.54 -0.2
1,905,905 - CCNA_01778 0.54 +1.1
1,905,905 - CCNA_01778 0.54 -1.9
1,905,905 - CCNA_01778 0.54 +0.5
1,905,905 - CCNA_01778 0.54 +0.1
1,905,905 - CCNA_01778 0.54 -0.8
1,905,905 - CCNA_01778 0.54 -1.6
1,905,907 + CCNA_01778 0.54 +2.6
1,905,915 - CCNA_01778 0.55 +0.2
1,905,915 - +0.5
1,905,932 + CCNA_01778 0.56 +1.9
1,905,983 + CCNA_01778 0.60 +1.4
1,906,005 - CCNA_01778 0.62 -0.7
1,906,011 - CCNA_01778 0.62 -1.1
1,906,019 - CCNA_01778 0.63 -1.9
1,906,028 + CCNA_01778 0.64 +0.6
1,906,134 + CCNA_01778 0.72 +1.1
1,906,159 + CCNA_01778 0.74 +3.2
1,906,159 + CCNA_01778 0.74 +1.5
1,906,161 + CCNA_01778 0.74 +2.2
1,906,200 + CCNA_01778 0.77 +2.0
1,906,202 + CCNA_01778 0.77 +1.5
1,906,220 + CCNA_01778 0.79 +2.8
1,906,220 + CCNA_01778 0.79 +1.5
1,906,220 + CCNA_01778 0.79 +1.2
1,906,227 + CCNA_01778 0.79 +0.2
1,906,241 - CCNA_01778 0.80 -0.3
1,906,248 - CCNA_01778 0.81 +0.6
1,906,253 - CCNA_01778 0.81 -0.8
1,906,270 + CCNA_01778 0.82 +1.9
1,906,351 + CCNA_01778 0.89 -1.0
1,906,353 + CCNA_01778 0.89 +0.8
1,906,359 + CCNA_01778 0.89 +1.8
1,906,367 - -0.9
1,906,369 - +0.9
1,906,485 - -0.6
1,906,500 + -0.4
1,906,562 - CCNA_01779 0.12 +1.1
1,906,567 + CCNA_01779 0.14 -0.4
1,906,576 - CCNA_01779 0.17 +1.6
1,906,627 - CCNA_01779 0.36 +1.7
1,906,666 - CCNA_01779 0.51 +0.4
1,906,694 - CCNA_01779 0.61 +0.4
1,906,694 - CCNA_01779 0.61 +1.0
1,906,699 - CCNA_01779 0.63 +0.9
1,906,746 + CCNA_01779 0.80 +0.6
1,906,773 - +0.1
1,906,779 + +1.4
1,906,787 - -0.2
1,906,802 + -0.8
1,906,802 + -1.6
1,906,808 - +1.2
1,906,841 + +0.6
1,906,843 - -0.1
1,906,961 + +1.1
1,906,974 - +2.1
1,906,974 - +2.2
1,907,052 + +2.4
1,907,089 - +3.3
1,907,109 + CCNA_01780 0.10 +1.9
1,907,109 - CCNA_01780 0.10 +1.0
1,907,117 - CCNA_01780 0.11 +3.5
1,907,186 + CCNA_01780 0.15 +2.6
1,907,189 - CCNA_01780 0.16 +3.6
1,907,209 + CCNA_01780 0.17 +2.5
1,907,284 + CCNA_01780 0.22 +2.4
1,907,306 + CCNA_01780 0.23 +2.3
1,907,306 + CCNA_01780 0.23 +1.9
1,907,336 - CCNA_01780 0.25 +2.7
1,907,430 + CCNA_01780 0.32 +0.8
1,907,498 - CCNA_01780 0.36 +2.5
1,907,512 + CCNA_01780 0.37 +1.3
1,907,520 - CCNA_01780 0.38 +2.2
1,907,521 - CCNA_01780 0.38 +3.3
1,907,555 + CCNA_01780 0.40 +0.8
1,907,563 - CCNA_01780 0.41 +2.7
1,907,648 + CCNA_01780 0.46 +2.2
1,907,656 - CCNA_01780 0.47 +3.1
1,907,661 - +2.1
1,907,694 + CCNA_01780 0.49 +2.2
1,907,705 + CCNA_01780 0.50 +2.2
1,907,713 - CCNA_01780 0.51 +3.1
1,907,737 + CCNA_01780 0.52 +4.7
1,907,737 + CCNA_01780 0.52 +1.8
1,907,748 + CCNA_01780 0.53 +2.6

Or see this region's nucleotide sequence