Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01767

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01766 and CCNA_01767 are separated by 194 nucleotidesCCNA_01767 and CCNA_01768 are separated by 12 nucleotidesCCNA_01768 and CCNA_01769 are separated by 77 nucleotides CCNA_01766: CCNA_01766 - CsgG-related curli protein, at 1,894,443 to 1,895,228 _01766 CCNA_01767: CCNA_01767 - cytochrome C family protein, at 1,895,423 to 1,895,821 _01767 CCNA_01768: CCNA_01768 - hypothetical protein, at 1,895,834 to 1,896,232 _01768 CCNA_01769: CCNA_01769 - ABC transporter ATP-binding protein, at 1,896,310 to 1,898,175 _01769 Position (kb) 1895 1896Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1894.464 kb on + strandat 1894.542 kb on + strand, within CCNA_01766at 1894.550 kb on - strand, within CCNA_01766at 1894.573 kb on + strand, within CCNA_01766at 1894.575 kb on + strand, within CCNA_01766at 1894.586 kb on + strand, within CCNA_01766at 1894.594 kb on - strand, within CCNA_01766at 1894.595 kb on + strand, within CCNA_01766at 1894.619 kb on - strand, within CCNA_01766at 1894.643 kb on + strand, within CCNA_01766at 1894.651 kb on - strand, within CCNA_01766at 1894.651 kb on - strand, within CCNA_01766at 1894.658 kb on - strand, within CCNA_01766at 1894.658 kb on - strand, within CCNA_01766at 1894.759 kb on - strand, within CCNA_01766at 1894.865 kb on - strand, within CCNA_01766at 1894.872 kb on + strand, within CCNA_01766at 1894.881 kb on + strand, within CCNA_01766at 1894.896 kb on + strand, within CCNA_01766at 1894.902 kb on - strand, within CCNA_01766at 1894.904 kb on + strand, within CCNA_01766at 1894.922 kb on - strand, within CCNA_01766at 1894.923 kb on + strand, within CCNA_01766at 1894.923 kb on + strand, within CCNA_01766at 1894.941 kb on - strand, within CCNA_01766at 1895.008 kb on - strand, within CCNA_01766at 1895.021 kb on + strand, within CCNA_01766at 1895.029 kb on - strand, within CCNA_01766at 1895.149 kb on + strand, within CCNA_01766at 1895.157 kb on - strandat 1895.166 kb on + strandat 1895.303 kb on - strandat 1895.305 kb on + strandat 1895.406 kb on - strandat 1895.486 kb on + strand, within CCNA_01767at 1895.497 kb on + strand, within CCNA_01767at 1895.498 kb on + strand, within CCNA_01767at 1895.507 kb on + strand, within CCNA_01767at 1895.515 kb on - strand, within CCNA_01767at 1895.578 kb on + strand, within CCNA_01767at 1895.675 kb on + strand, within CCNA_01767at 1895.679 kb on - strandat 1895.709 kb on - strand, within CCNA_01767at 1895.728 kb on + strand, within CCNA_01767at 1895.736 kb on - strand, within CCNA_01767at 1895.783 kb on + strandat 1895.783 kb on + strandat 1895.783 kb on + strandat 1895.783 kb on + strandat 1895.783 kb on + strandat 1895.791 kb on - strandat 1895.791 kb on - strandat 1895.791 kb on - strandat 1895.791 kb on - strandat 1895.845 kb on - strandat 1895.850 kb on + strandat 1895.858 kb on - strandat 1895.858 kb on - strandat 1895.860 kb on + strandat 1895.881 kb on + strand, within CCNA_01768at 1895.937 kb on - strand, within CCNA_01768at 1895.970 kb on - strand, within CCNA_01768at 1895.978 kb on + strand, within CCNA_01768at 1895.988 kb on + strand, within CCNA_01768at 1895.996 kb on - strandat 1895.996 kb on - strand, within CCNA_01768at 1896.103 kb on + strand, within CCNA_01768at 1896.103 kb on + strand, within CCNA_01768at 1896.106 kb on - strand, within CCNA_01768at 1896.106 kb on - strand, within CCNA_01768at 1896.197 kb on + strandat 1896.215 kb on + strandat 1896.215 kb on + strandat 1896.313 kb on + strandat 1896.313 kb on + strandat 1896.325 kb on + strandat 1896.346 kb on + strandat 1896.354 kb on - strandat 1896.379 kb on - strandat 1896.384 kb on - strandat 1896.384 kb on - strandat 1896.385 kb on - strandat 1896.451 kb on + strandat 1896.459 kb on - strandat 1896.475 kb on + strandat 1896.482 kb on - strandat 1896.490 kb on + strandat 1896.523 kb on - strand, within CCNA_01769at 1896.589 kb on - strand, within CCNA_01769at 1896.619 kb on + strand, within CCNA_01769at 1896.619 kb on + strand, within CCNA_01769at 1896.627 kb on - strand, within CCNA_01769at 1896.669 kb on - strand, within CCNA_01769at 1896.724 kb on + strand, within CCNA_01769

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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1,894,464 + -0.2
1,894,542 + CCNA_01766 0.13 -0.5
1,894,550 - CCNA_01766 0.14 +1.1
1,894,573 + CCNA_01766 0.17 -1.1
1,894,575 + CCNA_01766 0.17 +0.5
1,894,586 + CCNA_01766 0.18 -0.0
1,894,594 - CCNA_01766 0.19 +1.2
1,894,595 + CCNA_01766 0.19 -0.1
1,894,619 - CCNA_01766 0.22 +1.8
1,894,643 + CCNA_01766 0.25 +0.8
1,894,651 - CCNA_01766 0.26 +1.3
1,894,651 - CCNA_01766 0.26 +1.1
1,894,658 - CCNA_01766 0.27 +1.4
1,894,658 - CCNA_01766 0.27 +1.5
1,894,759 - CCNA_01766 0.40 +0.3
1,894,865 - CCNA_01766 0.54 +0.7
1,894,872 + CCNA_01766 0.55 -0.5
1,894,881 + CCNA_01766 0.56 -0.5
1,894,896 + CCNA_01766 0.58 +1.6
1,894,902 - CCNA_01766 0.58 +1.9
1,894,904 + CCNA_01766 0.59 -0.8
1,894,922 - CCNA_01766 0.61 +0.7
1,894,923 + CCNA_01766 0.61 -0.1
1,894,923 + CCNA_01766 0.61 -0.2
1,894,941 - CCNA_01766 0.63 +0.7
1,895,008 - CCNA_01766 0.72 +0.9
1,895,021 + CCNA_01766 0.74 -2.4
1,895,029 - CCNA_01766 0.75 +0.5
1,895,149 + CCNA_01766 0.90 -1.6
1,895,157 - +0.2
1,895,166 + +1.3
1,895,303 - -1.9
1,895,305 + -1.2
1,895,406 - +0.5
1,895,486 + CCNA_01767 0.16 +0.3
1,895,497 + CCNA_01767 0.19 +0.8
1,895,498 + CCNA_01767 0.19 +2.0
1,895,507 + CCNA_01767 0.21 -0.4
1,895,515 - CCNA_01767 0.23 +0.4
1,895,578 + CCNA_01767 0.39 +1.0
1,895,675 + CCNA_01767 0.63 +0.2
1,895,679 - +3.1
1,895,709 - CCNA_01767 0.72 +2.5
1,895,728 + CCNA_01767 0.76 +2.2
1,895,736 - CCNA_01767 0.78 -0.1
1,895,783 + +2.1
1,895,783 + +0.8
1,895,783 + +0.3
1,895,783 + +1.7
1,895,783 + +1.4
1,895,791 - +0.5
1,895,791 - +2.1
1,895,791 - +1.5
1,895,791 - +0.1
1,895,845 - +0.1
1,895,850 + +1.7
1,895,858 - +3.0
1,895,858 - -0.7
1,895,860 + +1.7
1,895,881 + CCNA_01768 0.12 -1.6
1,895,937 - CCNA_01768 0.26 +1.6
1,895,970 - CCNA_01768 0.34 +0.3
1,895,978 + CCNA_01768 0.36 +1.6
1,895,988 + CCNA_01768 0.39 +0.8
1,895,996 - +1.5
1,895,996 - CCNA_01768 0.41 -0.4
1,896,103 + CCNA_01768 0.67 -0.1
1,896,103 + CCNA_01768 0.67 +1.1
1,896,106 - CCNA_01768 0.68 +0.7
1,896,106 - CCNA_01768 0.68 +0.3
1,896,197 + -0.5
1,896,215 + +1.5
1,896,215 + +2.1
1,896,313 + +0.4
1,896,313 + +0.1
1,896,325 + -0.3
1,896,346 + +0.9
1,896,354 - +0.3
1,896,379 - +1.8
1,896,384 - +1.4
1,896,384 - -0.3
1,896,385 - +0.6
1,896,451 + -0.3
1,896,459 - +0.7
1,896,475 + +1.8
1,896,482 - +0.3
1,896,490 + -0.4
1,896,523 - CCNA_01769 0.11 -0.4
1,896,589 - CCNA_01769 0.15 +1.2
1,896,619 + CCNA_01769 0.17 +0.1
1,896,619 + CCNA_01769 0.17 -0.6
1,896,627 - CCNA_01769 0.17 +2.1
1,896,669 - CCNA_01769 0.19 -0.2
1,896,724 + CCNA_01769 0.22 +0.9

Or see this region's nucleotide sequence