Experiment: R2A with Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21060 and CA265_RS21065 are separated by 5 nucleotides CA265_RS21065 and CA265_RS21070 are separated by 230 nucleotides CA265_RS21070 and CA265_RS21075 are separated by 90 nucleotides
CA265_RS21060: CA265_RS21060 - hypothetical protein, at 5,187,692 to 5,188,060
_RS21060
CA265_RS21065: CA265_RS21065 - hypothetical protein, at 5,188,066 to 5,188,368
_RS21065
CA265_RS21070: CA265_RS21070 - transcription-repair coupling factor, at 5,188,599 to 5,191,937
_RS21070
CA265_RS21075: CA265_RS21075 - ATPase, at 5,192,028 to 5,193,164
_RS21075
Position (kb) 5188
5189
5190
5191
5192 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5187.619 kb on - strand at 5187.688 kb on - strand at 5187.723 kb on - strand at 5187.776 kb on + strand, within CA265_RS21060 at 5187.800 kb on - strand, within CA265_RS21060 at 5187.902 kb on + strand, within CA265_RS21060 at 5187.905 kb on - strand, within CA265_RS21060 at 5187.911 kb on - strand, within CA265_RS21060 at 5187.956 kb on - strand, within CA265_RS21060 at 5188.051 kb on - strand at 5188.053 kb on - strand at 5188.055 kb on - strand at 5188.055 kb on - strand at 5188.055 kb on - strand at 5188.055 kb on - strand at 5188.068 kb on - strand at 5188.219 kb on + strand, within CA265_RS21065 at 5188.252 kb on + strand, within CA265_RS21065 at 5188.275 kb on + strand, within CA265_RS21065 at 5188.309 kb on + strand, within CA265_RS21065 at 5188.361 kb on + strand at 5188.390 kb on + strand at 5188.397 kb on + strand at 5188.397 kb on + strand at 5188.574 kb on + strand at 5188.588 kb on - strand at 5188.645 kb on + strand at 5188.645 kb on + strand at 5188.645 kb on + strand at 5188.646 kb on - strand at 5188.757 kb on + strand at 5188.758 kb on - strand at 5188.826 kb on - strand at 5188.889 kb on - strand at 5188.893 kb on - strand at 5189.041 kb on + strand, within CA265_RS21070 at 5189.049 kb on - strand, within CA265_RS21070 at 5189.152 kb on + strand, within CA265_RS21070 at 5189.153 kb on - strand, within CA265_RS21070 at 5189.153 kb on - strand, within CA265_RS21070 at 5189.158 kb on + strand, within CA265_RS21070 at 5189.158 kb on + strand, within CA265_RS21070 at 5189.189 kb on + strand, within CA265_RS21070 at 5189.212 kb on + strand, within CA265_RS21070 at 5189.219 kb on + strand, within CA265_RS21070 at 5189.219 kb on + strand, within CA265_RS21070 at 5189.291 kb on - strand, within CA265_RS21070 at 5189.306 kb on - strand, within CA265_RS21070 at 5189.371 kb on + strand, within CA265_RS21070 at 5189.390 kb on + strand, within CA265_RS21070 at 5189.609 kb on + strand, within CA265_RS21070 at 5189.613 kb on - strand, within CA265_RS21070 at 5189.711 kb on - strand, within CA265_RS21070 at 5189.711 kb on - strand, within CA265_RS21070 at 5189.765 kb on + strand, within CA265_RS21070 at 5189.785 kb on + strand, within CA265_RS21070 at 5189.841 kb on + strand, within CA265_RS21070 at 5189.847 kb on + strand, within CA265_RS21070 at 5189.848 kb on - strand, within CA265_RS21070 at 5189.848 kb on - strand, within CA265_RS21070 at 5189.848 kb on - strand, within CA265_RS21070 at 5189.849 kb on + strand, within CA265_RS21070 at 5189.922 kb on + strand, within CA265_RS21070 at 5189.922 kb on + strand, within CA265_RS21070 at 5189.922 kb on + strand, within CA265_RS21070 at 5189.922 kb on + strand, within CA265_RS21070 at 5189.922 kb on + strand, within CA265_RS21070 at 5190.040 kb on + strand, within CA265_RS21070 at 5190.072 kb on + strand, within CA265_RS21070 at 5190.193 kb on - strand, within CA265_RS21070 at 5190.193 kb on - strand, within CA265_RS21070 at 5190.236 kb on + strand, within CA265_RS21070 at 5190.240 kb on + strand, within CA265_RS21070 at 5190.269 kb on + strand, within CA265_RS21070 at 5190.296 kb on - strand, within CA265_RS21070 at 5190.352 kb on + strand, within CA265_RS21070 at 5190.407 kb on + strand, within CA265_RS21070 at 5190.466 kb on + strand, within CA265_RS21070 at 5190.477 kb on - strand, within CA265_RS21070 at 5190.598 kb on + strand, within CA265_RS21070 at 5190.660 kb on - strand, within CA265_RS21070 at 5190.728 kb on + strand, within CA265_RS21070 at 5190.741 kb on - strand, within CA265_RS21070 at 5190.778 kb on + strand, within CA265_RS21070 at 5190.797 kb on - strand, within CA265_RS21070 at 5190.809 kb on + strand, within CA265_RS21070 at 5190.810 kb on - strand, within CA265_RS21070 at 5190.848 kb on - strand, within CA265_RS21070 at 5190.848 kb on - strand, within CA265_RS21070 at 5190.992 kb on - strand, within CA265_RS21070 at 5191.036 kb on + strand, within CA265_RS21070 at 5191.036 kb on + strand, within CA265_RS21070 at 5191.037 kb on - strand, within CA265_RS21070 at 5191.050 kb on - strand, within CA265_RS21070 at 5191.128 kb on - strand, within CA265_RS21070 at 5191.134 kb on - strand, within CA265_RS21070 at 5191.146 kb on - strand, within CA265_RS21070 at 5191.146 kb on - strand, within CA265_RS21070 at 5191.216 kb on - strand, within CA265_RS21070 at 5191.234 kb on + strand, within CA265_RS21070 at 5191.401 kb on + strand, within CA265_RS21070 at 5191.490 kb on - strand, within CA265_RS21070 at 5191.496 kb on + strand, within CA265_RS21070 at 5191.497 kb on - strand, within CA265_RS21070 at 5191.522 kb on + strand, within CA265_RS21070 at 5191.525 kb on - strand, within CA265_RS21070 at 5191.527 kb on - strand, within CA265_RS21070 at 5191.527 kb on - strand, within CA265_RS21070 at 5191.527 kb on - strand, within CA265_RS21070 at 5191.540 kb on - strand, within CA265_RS21070 at 5191.540 kb on - strand, within CA265_RS21070 at 5191.540 kb on - strand, within CA265_RS21070 at 5191.762 kb on + strand at 5191.890 kb on - strand at 5191.892 kb on - strand at 5191.945 kb on - strand at 5192.043 kb on - strand at 5192.098 kb on + strand at 5192.148 kb on - strand, within CA265_RS21075 at 5192.148 kb on - strand, within CA265_RS21075 at 5192.150 kb on + strand, within CA265_RS21075 at 5192.150 kb on + strand, within CA265_RS21075 at 5192.151 kb on - strand, within CA265_RS21075 at 5192.159 kb on + strand, within CA265_RS21075 at 5192.200 kb on + strand, within CA265_RS21075 at 5192.201 kb on - strand, within CA265_RS21075 at 5192.206 kb on + strand, within CA265_RS21075 at 5192.207 kb on - strand, within CA265_RS21075 at 5192.238 kb on - strand, within CA265_RS21075 at 5192.263 kb on + strand, within CA265_RS21075 at 5192.270 kb on + strand, within CA265_RS21075 at 5192.271 kb on - strand, within CA265_RS21075 at 5192.290 kb on + strand, within CA265_RS21075 at 5192.327 kb on + strand, within CA265_RS21075 at 5192.421 kb on + strand, within CA265_RS21075 at 5192.422 kb on - strand, within CA265_RS21075 at 5192.422 kb on - strand, within CA265_RS21075 at 5192.422 kb on - strand, within CA265_RS21075 at 5192.422 kb on - strand, within CA265_RS21075 at 5192.424 kb on + strand, within CA265_RS21075 at 5192.437 kb on + strand, within CA265_RS21075 at 5192.527 kb on + strand, within CA265_RS21075 at 5192.610 kb on + strand, within CA265_RS21075 at 5192.639 kb on - strand, within CA265_RS21075 at 5192.687 kb on + strand, within CA265_RS21075 at 5192.689 kb on + strand, within CA265_RS21075 at 5192.720 kb on + strand, within CA265_RS21075 at 5192.788 kb on - strand, within CA265_RS21075 at 5192.790 kb on - strand, within CA265_RS21075 at 5192.801 kb on - strand, within CA265_RS21075 at 5192.805 kb on - strand, within CA265_RS21075 at 5192.864 kb on - strand, within CA265_RS21075 at 5192.864 kb on - strand, within CA265_RS21075 at 5192.912 kb on - strand, within CA265_RS21075
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.005 mg/ml remove 5,187,619 - -0.4 5,187,688 - +0.3 5,187,723 - -0.4 5,187,776 + CA265_RS21060 0.23 +0.9 5,187,800 - CA265_RS21060 0.29 -1.1 5,187,902 + CA265_RS21060 0.57 +0.6 5,187,905 - CA265_RS21060 0.58 -0.2 5,187,911 - CA265_RS21060 0.59 +0.3 5,187,956 - CA265_RS21060 0.72 +0.7 5,188,051 - +2.9 5,188,053 - -0.4 5,188,055 - +1.3 5,188,055 - -0.4 5,188,055 - +0.2 5,188,055 - +0.6 5,188,068 - +0.2 5,188,219 + CA265_RS21065 0.50 -0.1 5,188,252 + CA265_RS21065 0.61 -0.8 5,188,275 + CA265_RS21065 0.69 +0.2 5,188,309 + CA265_RS21065 0.80 +0.2 5,188,361 + +1.1 5,188,390 + +0.1 5,188,397 + +0.1 5,188,397 + +0.2 5,188,574 + +2.9 5,188,588 - -2.2 5,188,645 + +0.9 5,188,645 + -0.9 5,188,645 + -0.0 5,188,646 - -1.3 5,188,757 + -1.4 5,188,758 - -1.3 5,188,826 - +0.9 5,188,889 - -0.7 5,188,893 - -1.1 5,189,041 + CA265_RS21070 0.13 -0.4 5,189,049 - CA265_RS21070 0.13 -0.4 5,189,152 + CA265_RS21070 0.17 -1.3 5,189,153 - CA265_RS21070 0.17 -1.8 5,189,153 - CA265_RS21070 0.17 -0.8 5,189,158 + CA265_RS21070 0.17 +0.7 5,189,158 + CA265_RS21070 0.17 -1.0 5,189,189 + CA265_RS21070 0.18 -0.2 5,189,212 + CA265_RS21070 0.18 -0.3 5,189,219 + CA265_RS21070 0.19 -1.3 5,189,219 + CA265_RS21070 0.19 -0.9 5,189,291 - CA265_RS21070 0.21 -0.5 5,189,306 - CA265_RS21070 0.21 +0.5 5,189,371 + CA265_RS21070 0.23 +0.6 5,189,390 + CA265_RS21070 0.24 +0.6 5,189,609 + CA265_RS21070 0.30 +0.7 5,189,613 - CA265_RS21070 0.30 -0.3 5,189,711 - CA265_RS21070 0.33 -0.1 5,189,711 - CA265_RS21070 0.33 -0.3 5,189,765 + CA265_RS21070 0.35 -1.4 5,189,785 + CA265_RS21070 0.36 +0.5 5,189,841 + CA265_RS21070 0.37 -1.3 5,189,847 + CA265_RS21070 0.37 -0.1 5,189,848 - CA265_RS21070 0.37 +1.1 5,189,848 - CA265_RS21070 0.37 -0.6 5,189,848 - CA265_RS21070 0.37 +0.3 5,189,849 + CA265_RS21070 0.37 -1.2 5,189,922 + CA265_RS21070 0.40 +0.1 5,189,922 + CA265_RS21070 0.40 -0.2 5,189,922 + CA265_RS21070 0.40 -1.1 5,189,922 + CA265_RS21070 0.40 -0.3 5,189,922 + CA265_RS21070 0.40 -0.1 5,190,040 + CA265_RS21070 0.43 -0.5 5,190,072 + CA265_RS21070 0.44 -1.3 5,190,193 - CA265_RS21070 0.48 +0.1 5,190,193 - CA265_RS21070 0.48 +0.2 5,190,236 + CA265_RS21070 0.49 +0.5 5,190,240 + CA265_RS21070 0.49 -1.4 5,190,269 + CA265_RS21070 0.50 +1.9 5,190,296 - CA265_RS21070 0.51 -0.4 5,190,352 + CA265_RS21070 0.53 -1.6 5,190,407 + CA265_RS21070 0.54 -0.9 5,190,466 + CA265_RS21070 0.56 -0.1 5,190,477 - CA265_RS21070 0.56 -0.9 5,190,598 + CA265_RS21070 0.60 +0.2 5,190,660 - CA265_RS21070 0.62 +0.2 5,190,728 + CA265_RS21070 0.64 +0.6 5,190,741 - CA265_RS21070 0.64 -0.8 5,190,778 + CA265_RS21070 0.65 -1.7 5,190,797 - CA265_RS21070 0.66 -0.6 5,190,809 + CA265_RS21070 0.66 -0.4 5,190,810 - CA265_RS21070 0.66 -1.3 5,190,848 - CA265_RS21070 0.67 +0.4 5,190,848 - CA265_RS21070 0.67 +0.4 5,190,992 - CA265_RS21070 0.72 -0.8 5,191,036 + CA265_RS21070 0.73 -1.1 5,191,036 + CA265_RS21070 0.73 -0.8 5,191,037 - CA265_RS21070 0.73 -0.2 5,191,050 - CA265_RS21070 0.73 -0.9 5,191,128 - CA265_RS21070 0.76 +0.3 5,191,134 - CA265_RS21070 0.76 -0.3 5,191,146 - CA265_RS21070 0.76 +0.5 5,191,146 - CA265_RS21070 0.76 -0.4 5,191,216 - CA265_RS21070 0.78 -0.7 5,191,234 + CA265_RS21070 0.79 -1.9 5,191,401 + CA265_RS21070 0.84 -1.1 5,191,490 - CA265_RS21070 0.87 -0.6 5,191,496 + CA265_RS21070 0.87 -1.6 5,191,497 - CA265_RS21070 0.87 -0.9 5,191,522 + CA265_RS21070 0.88 -0.2 5,191,525 - CA265_RS21070 0.88 +0.2 5,191,527 - CA265_RS21070 0.88 -0.4 5,191,527 - CA265_RS21070 0.88 +0.3 5,191,527 - CA265_RS21070 0.88 -0.5 5,191,540 - CA265_RS21070 0.88 -0.4 5,191,540 - CA265_RS21070 0.88 -2.0 5,191,540 - CA265_RS21070 0.88 -1.8 5,191,762 + -1.1 5,191,890 - -0.5 5,191,892 - -0.7 5,191,945 - -0.8 5,192,043 - -0.1 5,192,098 + +0.0 5,192,148 - CA265_RS21075 0.11 +0.1 5,192,148 - CA265_RS21075 0.11 -0.7 5,192,150 + CA265_RS21075 0.11 +0.4 5,192,150 + CA265_RS21075 0.11 +0.0 5,192,151 - CA265_RS21075 0.11 +0.7 5,192,159 + CA265_RS21075 0.12 +0.0 5,192,200 + CA265_RS21075 0.15 +0.7 5,192,201 - CA265_RS21075 0.15 -0.1 5,192,206 + CA265_RS21075 0.16 -0.7 5,192,207 - CA265_RS21075 0.16 +0.4 5,192,238 - CA265_RS21075 0.18 -0.7 5,192,263 + CA265_RS21075 0.21 +0.6 5,192,270 + CA265_RS21075 0.21 -0.2 5,192,271 - CA265_RS21075 0.21 +0.4 5,192,290 + CA265_RS21075 0.23 -0.6 5,192,327 + CA265_RS21075 0.26 -0.3 5,192,421 + CA265_RS21075 0.35 -1.1 5,192,422 - CA265_RS21075 0.35 -0.7 5,192,422 - CA265_RS21075 0.35 +0.4 5,192,422 - CA265_RS21075 0.35 +0.2 5,192,422 - CA265_RS21075 0.35 -0.1 5,192,424 + CA265_RS21075 0.35 +1.0 5,192,437 + CA265_RS21075 0.36 +0.9 5,192,527 + CA265_RS21075 0.44 +0.6 5,192,610 + CA265_RS21075 0.51 +0.1 5,192,639 - CA265_RS21075 0.54 +0.4 5,192,687 + CA265_RS21075 0.58 +0.9 5,192,689 + CA265_RS21075 0.58 +0.7 5,192,720 + CA265_RS21075 0.61 +0.1 5,192,788 - CA265_RS21075 0.67 -0.3 5,192,790 - CA265_RS21075 0.67 +0.0 5,192,801 - CA265_RS21075 0.68 -0.1 5,192,805 - CA265_RS21075 0.68 -0.1 5,192,864 - CA265_RS21075 0.74 +0.3 5,192,864 - CA265_RS21075 0.74 +0.1 5,192,912 - CA265_RS21075 0.78 +0.2
Or see this region's nucleotide sequence