Experiment: R2A with Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20345 and CA265_RS20350 are separated by 27 nucleotides CA265_RS20350 and CA265_RS20355 overlap by 32 nucleotides CA265_RS20355 and CA265_RS20360 are separated by 1 nucleotides
CA265_RS20345: CA265_RS20345 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 5,034,155 to 5,035,453
_RS20345
CA265_RS20350: CA265_RS20350 - gliding motility lipoprotein GldH, at 5,035,481 to 5,035,963
_RS20350
CA265_RS20355: CA265_RS20355 - hypothetical protein, at 5,035,932 to 5,037,464
_RS20355
CA265_RS20360: CA265_RS20360 - hypothetical protein, at 5,037,466 to 5,038,614
_RS20360
Position (kb) 5035
5036
5037
5038 Strain fitness (log2 ratio) -1
0
1 at 5035.457 kb on - strand at 5035.482 kb on + strand at 5035.482 kb on + strand at 5035.483 kb on - strand at 5035.483 kb on - strand at 5035.483 kb on - strand at 5035.534 kb on + strand, within CA265_RS20350 at 5035.534 kb on + strand, within CA265_RS20350 at 5035.664 kb on - strand, within CA265_RS20350 at 5035.693 kb on + strand, within CA265_RS20350 at 5035.703 kb on - strand, within CA265_RS20350 at 5035.721 kb on + strand, within CA265_RS20350 at 5035.722 kb on - strand, within CA265_RS20350 at 5035.724 kb on - strand, within CA265_RS20350 at 5035.736 kb on - strand, within CA265_RS20350 at 5035.736 kb on - strand, within CA265_RS20350 at 5035.814 kb on - strand, within CA265_RS20350 at 5035.876 kb on + strand, within CA265_RS20350 at 5035.885 kb on + strand, within CA265_RS20350 at 5035.901 kb on - strand, within CA265_RS20350 at 5035.950 kb on - strand at 5035.968 kb on - strand at 5035.983 kb on - strand at 5035.985 kb on + strand at 5036.034 kb on - strand at 5036.097 kb on - strand, within CA265_RS20355 at 5036.252 kb on + strand, within CA265_RS20355 at 5036.331 kb on - strand, within CA265_RS20355 at 5037.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.005 mg/ml remove 5,035,457 - +1.0 5,035,482 + +0.1 5,035,482 + +0.1 5,035,483 - +0.9 5,035,483 - -0.0 5,035,483 - -1.4 5,035,534 + CA265_RS20350 0.11 +0.8 5,035,534 + CA265_RS20350 0.11 +0.1 5,035,664 - CA265_RS20350 0.38 +0.0 5,035,693 + CA265_RS20350 0.44 +0.7 5,035,703 - CA265_RS20350 0.46 -0.3 5,035,721 + CA265_RS20350 0.50 -0.7 5,035,722 - CA265_RS20350 0.50 +1.6 5,035,724 - CA265_RS20350 0.50 +1.0 5,035,736 - CA265_RS20350 0.53 +0.3 5,035,736 - CA265_RS20350 0.53 +1.2 5,035,814 - CA265_RS20350 0.69 +0.6 5,035,876 + CA265_RS20350 0.82 -0.4 5,035,885 + CA265_RS20350 0.84 +0.9 5,035,901 - CA265_RS20350 0.87 +0.1 5,035,950 - +0.0 5,035,968 - +0.9 5,035,983 - -1.3 5,035,985 + +0.3 5,036,034 - -0.1 5,036,097 - CA265_RS20355 0.11 +0.3 5,036,252 + CA265_RS20355 0.21 -0.7 5,036,331 - CA265_RS20355 0.26 -1.1 5,037,476 - -0.4
Or see this region's nucleotide sequence