Experiment: R2A with Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS14250 and CA265_RS14255 are separated by 132 nucleotides CA265_RS14255 and CA265_RS14260 are separated by 235 nucleotides
CA265_RS14250: CA265_RS14250 - hypothetical protein, at 3,597,937 to 3,600,195
_RS14250
CA265_RS14255: CA265_RS14255 - DNA polymerase III subunit delta, at 3,600,328 to 3,601,350
_RS14255
CA265_RS14260: CA265_RS14260 - restriction endonuclease subunit R, at 3,601,586 to 3,602,044
_RS14260
Position (kb)
3600
3601
3602 Strain fitness (log2 ratio)
-1
0
1 at 3599.426 kb on - strand, within CA265_RS14250 at 3599.468 kb on - strand, within CA265_RS14250 at 3599.497 kb on + strand, within CA265_RS14250 at 3599.497 kb on + strand, within CA265_RS14250 at 3599.530 kb on - strand, within CA265_RS14250 at 3599.550 kb on + strand, within CA265_RS14250 at 3599.551 kb on - strand, within CA265_RS14250 at 3599.583 kb on - strand, within CA265_RS14250 at 3599.641 kb on - strand, within CA265_RS14250 at 3599.662 kb on + strand, within CA265_RS14250 at 3599.662 kb on + strand, within CA265_RS14250 at 3599.663 kb on - strand, within CA265_RS14250 at 3599.663 kb on - strand, within CA265_RS14250 at 3599.708 kb on + strand, within CA265_RS14250 at 3599.709 kb on - strand, within CA265_RS14250 at 3599.733 kb on + strand, within CA265_RS14250 at 3599.734 kb on - strand, within CA265_RS14250 at 3599.735 kb on + strand, within CA265_RS14250 at 3599.777 kb on - strand, within CA265_RS14250 at 3599.814 kb on + strand, within CA265_RS14250 at 3599.916 kb on - strand, within CA265_RS14250 at 3599.916 kb on - strand, within CA265_RS14250 at 3599.955 kb on + strand, within CA265_RS14250 at 3599.955 kb on + strand, within CA265_RS14250 at 3600.025 kb on - strand at 3600.043 kb on + strand at 3600.170 kb on - strand at 3600.223 kb on - strand at 3600.223 kb on - strand at 3600.223 kb on - strand at 3600.223 kb on - strand at 3600.250 kb on - strand at 3600.300 kb on + strand at 3600.330 kb on - strand at 3601.404 kb on - strand at 3601.404 kb on - strand at 3601.488 kb on + strand at 3601.542 kb on - strand at 3601.564 kb on - strand at 3601.611 kb on + strand at 3601.658 kb on - strand, within CA265_RS14260 at 3601.723 kb on + strand, within CA265_RS14260 at 3601.724 kb on - strand, within CA265_RS14260 at 3601.726 kb on - strand, within CA265_RS14260 at 3601.726 kb on - strand, within CA265_RS14260 at 3601.760 kb on - strand, within CA265_RS14260 at 3601.826 kb on + strand, within CA265_RS14260 at 3601.827 kb on - strand, within CA265_RS14260 at 3601.832 kb on - strand, within CA265_RS14260 at 3601.927 kb on - strand, within CA265_RS14260 at 3602.040 kb on + strand at 3602.104 kb on - strand at 3602.108 kb on + strand at 3602.142 kb on - strand at 3602.142 kb on - strand at 3602.149 kb on - strand at 3602.221 kb on + strand at 3602.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.005 mg/ml remove 3,599,426 - CA265_RS14250 0.66 -0.6 3,599,468 - CA265_RS14250 0.68 +0.1 3,599,497 + CA265_RS14250 0.69 -0.2 3,599,497 + CA265_RS14250 0.69 +0.4 3,599,530 - CA265_RS14250 0.71 -0.3 3,599,550 + CA265_RS14250 0.71 +0.3 3,599,551 - CA265_RS14250 0.71 -0.2 3,599,583 - CA265_RS14250 0.73 +0.4 3,599,641 - CA265_RS14250 0.75 +0.5 3,599,662 + CA265_RS14250 0.76 -0.1 3,599,662 + CA265_RS14250 0.76 -0.4 3,599,663 - CA265_RS14250 0.76 +1.2 3,599,663 - CA265_RS14250 0.76 -0.1 3,599,708 + CA265_RS14250 0.78 -0.2 3,599,709 - CA265_RS14250 0.78 -0.0 3,599,733 + CA265_RS14250 0.80 -0.1 3,599,734 - CA265_RS14250 0.80 +0.2 3,599,735 + CA265_RS14250 0.80 -0.1 3,599,777 - CA265_RS14250 0.81 -0.2 3,599,814 + CA265_RS14250 0.83 -0.0 3,599,916 - CA265_RS14250 0.88 -0.4 3,599,916 - CA265_RS14250 0.88 -1.1 3,599,955 + CA265_RS14250 0.89 -0.1 3,599,955 + CA265_RS14250 0.89 -0.8 3,600,025 - -1.0 3,600,043 + +0.8 3,600,170 - +0.3 3,600,223 - +0.6 3,600,223 - -0.2 3,600,223 - -1.7 3,600,223 - +0.5 3,600,250 - -0.4 3,600,300 + -0.1 3,600,330 - -0.3 3,601,404 - -0.0 3,601,404 - +1.1 3,601,488 + +0.2 3,601,542 - +0.3 3,601,564 - -0.3 3,601,611 + +0.2 3,601,658 - CA265_RS14260 0.16 -0.1 3,601,723 + CA265_RS14260 0.30 +0.4 3,601,724 - CA265_RS14260 0.30 +1.3 3,601,726 - CA265_RS14260 0.31 +1.4 3,601,726 - CA265_RS14260 0.31 -0.0 3,601,760 - CA265_RS14260 0.38 -0.8 3,601,826 + CA265_RS14260 0.52 +0.2 3,601,827 - CA265_RS14260 0.53 +0.4 3,601,832 - CA265_RS14260 0.54 -0.3 3,601,927 - CA265_RS14260 0.74 +0.3 3,602,040 + -0.3 3,602,104 - +1.0 3,602,108 + -0.1 3,602,142 - -0.4 3,602,142 - +0.4 3,602,149 - -0.8 3,602,221 + +1.7 3,602,311 - +0.7
Or see this region's nucleotide sequence