Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03300

Experiment: R2A with Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03295 and CA265_RS03300 are separated by 33 nucleotidesCA265_RS03300 and CA265_RS03305 are separated by 84 nucleotidesCA265_RS03305 and CA265_RS03310 are separated by 59 nucleotides CA265_RS03295: CA265_RS03295 - gliding motility-associated ABC transporter substrate-binding protein GldG, at 804,333 to 806,018 _RS03295 CA265_RS03300: CA265_RS03300 - DNA polymerase III subunit beta, at 806,052 to 807,176 _RS03300 CA265_RS03305: CA265_RS03305 - hypothetical protein, at 807,261 to 807,938 _RS03305 CA265_RS03310: CA265_RS03310 - hypothetical protein, at 807,998 to 808,699 _RS03310 Position (kb) 806 807 808Strain fitness (log2 ratio) -2 -1 0 1 2at 805.083 kb on - strand, within CA265_RS03295at 805.157 kb on - strand, within CA265_RS03295at 805.157 kb on - strand, within CA265_RS03295at 805.157 kb on - strand, within CA265_RS03295at 805.212 kb on - strand, within CA265_RS03295at 805.229 kb on + strand, within CA265_RS03295at 805.230 kb on - strand, within CA265_RS03295at 805.243 kb on - strand, within CA265_RS03295at 805.257 kb on - strand, within CA265_RS03295at 805.260 kb on + strand, within CA265_RS03295at 805.315 kb on + strand, within CA265_RS03295at 805.316 kb on - strand, within CA265_RS03295at 805.384 kb on + strand, within CA265_RS03295at 805.434 kb on - strand, within CA265_RS03295at 805.439 kb on - strand, within CA265_RS03295at 805.443 kb on - strand, within CA265_RS03295at 805.500 kb on - strand, within CA265_RS03295at 805.506 kb on + strand, within CA265_RS03295at 805.508 kb on + strand, within CA265_RS03295at 805.508 kb on + strand, within CA265_RS03295at 805.509 kb on - strand, within CA265_RS03295at 805.509 kb on - strand, within CA265_RS03295at 805.553 kb on - strand, within CA265_RS03295at 805.652 kb on + strand, within CA265_RS03295at 805.683 kb on - strand, within CA265_RS03295at 805.703 kb on - strand, within CA265_RS03295at 805.790 kb on + strand, within CA265_RS03295at 805.791 kb on - strand, within CA265_RS03295at 805.791 kb on - strand, within CA265_RS03295at 805.791 kb on - strand, within CA265_RS03295at 805.802 kb on + strand, within CA265_RS03295at 805.821 kb on - strand, within CA265_RS03295at 805.830 kb on + strand, within CA265_RS03295at 805.934 kb on + strandat 805.942 kb on + strandat 805.964 kb on - strandat 807.243 kb on + strandat 807.314 kb on + strandat 807.314 kb on + strandat 807.335 kb on + strand, within CA265_RS03305at 807.427 kb on + strand, within CA265_RS03305at 807.427 kb on + strand, within CA265_RS03305at 807.431 kb on + strand, within CA265_RS03305at 807.451 kb on + strand, within CA265_RS03305at 807.452 kb on - strand, within CA265_RS03305at 807.503 kb on + strand, within CA265_RS03305at 807.530 kb on + strand, within CA265_RS03305at 807.533 kb on + strand, within CA265_RS03305at 807.572 kb on + strand, within CA265_RS03305at 807.644 kb on + strand, within CA265_RS03305at 807.644 kb on + strand, within CA265_RS03305at 807.671 kb on - strand, within CA265_RS03305at 807.693 kb on - strand, within CA265_RS03305at 807.717 kb on - strand, within CA265_RS03305at 807.717 kb on - strand, within CA265_RS03305at 807.780 kb on - strand, within CA265_RS03305at 807.789 kb on - strand, within CA265_RS03305at 807.810 kb on - strand, within CA265_RS03305at 807.846 kb on - strand, within CA265_RS03305at 807.873 kb on + strandat 807.897 kb on - strandat 807.921 kb on - strandat 807.936 kb on + strandat 807.949 kb on + strandat 807.950 kb on - strandat 807.970 kb on + strandat 807.978 kb on - strandat 808.011 kb on + strandat 808.083 kb on + strand, within CA265_RS03310at 808.132 kb on + strand, within CA265_RS03310at 808.132 kb on + strand, within CA265_RS03310at 808.133 kb on - strand, within CA265_RS03310at 808.168 kb on - strand, within CA265_RS03310

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.005 mg/ml
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805,083 - CA265_RS03295 0.44 +0.0
805,157 - CA265_RS03295 0.49 +0.4
805,157 - CA265_RS03295 0.49 -0.1
805,157 - CA265_RS03295 0.49 -0.3
805,212 - CA265_RS03295 0.52 +0.4
805,229 + CA265_RS03295 0.53 +0.6
805,230 - CA265_RS03295 0.53 +0.2
805,243 - CA265_RS03295 0.54 +0.3
805,257 - CA265_RS03295 0.55 -0.2
805,260 + CA265_RS03295 0.55 -0.0
805,315 + CA265_RS03295 0.58 +0.6
805,316 - CA265_RS03295 0.58 -0.4
805,384 + CA265_RS03295 0.62 +1.6
805,434 - CA265_RS03295 0.65 +0.0
805,439 - CA265_RS03295 0.66 -0.5
805,443 - CA265_RS03295 0.66 -0.9
805,500 - CA265_RS03295 0.69 +0.3
805,506 + CA265_RS03295 0.70 +0.1
805,508 + CA265_RS03295 0.70 +0.7
805,508 + CA265_RS03295 0.70 +1.2
805,509 - CA265_RS03295 0.70 +0.4
805,509 - CA265_RS03295 0.70 -0.3
805,553 - CA265_RS03295 0.72 -0.3
805,652 + CA265_RS03295 0.78 +0.6
805,683 - CA265_RS03295 0.80 +0.1
805,703 - CA265_RS03295 0.81 -0.4
805,790 + CA265_RS03295 0.86 +0.8
805,791 - CA265_RS03295 0.86 +0.4
805,791 - CA265_RS03295 0.86 -1.0
805,791 - CA265_RS03295 0.86 -1.8
805,802 + CA265_RS03295 0.87 +0.7
805,821 - CA265_RS03295 0.88 -0.3
805,830 + CA265_RS03295 0.89 +0.6
805,934 + +0.4
805,942 + +0.7
805,964 - +0.7
807,243 + -0.1
807,314 + +0.2
807,314 + -0.5
807,335 + CA265_RS03305 0.11 +1.8
807,427 + CA265_RS03305 0.24 -0.4
807,427 + CA265_RS03305 0.24 -1.5
807,431 + CA265_RS03305 0.25 +0.1
807,451 + CA265_RS03305 0.28 +0.2
807,452 - CA265_RS03305 0.28 +1.6
807,503 + CA265_RS03305 0.36 +0.5
807,530 + CA265_RS03305 0.40 +0.3
807,533 + CA265_RS03305 0.40 +0.1
807,572 + CA265_RS03305 0.46 -0.3
807,644 + CA265_RS03305 0.56 +0.4
807,644 + CA265_RS03305 0.56 -0.4
807,671 - CA265_RS03305 0.60 +0.2
807,693 - CA265_RS03305 0.64 +0.1
807,717 - CA265_RS03305 0.67 +0.4
807,717 - CA265_RS03305 0.67 -0.4
807,780 - CA265_RS03305 0.77 +0.2
807,789 - CA265_RS03305 0.78 +0.1
807,810 - CA265_RS03305 0.81 +0.4
807,846 - CA265_RS03305 0.86 -0.4
807,873 + -0.4
807,897 - +0.4
807,921 - -0.3
807,936 + -1.0
807,949 + +0.2
807,950 - +0.2
807,970 + +0.7
807,978 - -0.7
808,011 + +0.5
808,083 + CA265_RS03310 0.12 -0.0
808,132 + CA265_RS03310 0.19 -0.2
808,132 + CA265_RS03310 0.19 +0.0
808,133 - CA265_RS03310 0.19 +0.2
808,168 - CA265_RS03310 0.24 +0.0

Or see this region's nucleotide sequence