Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27215

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27210 and BPHYT_RS27215 are separated by 27 nucleotidesBPHYT_RS27215 and BPHYT_RS27220 overlap by 4 nucleotides BPHYT_RS27210: BPHYT_RS27210 - alcohol dehydrogenase, at 1,681,867 to 1,682,874 _RS27210 BPHYT_RS27215: BPHYT_RS27215 - D-mannonate oxidoreductase, at 1,682,902 to 1,684,062 _RS27215 BPHYT_RS27220: BPHYT_RS27220 - galactarate dehydratase, at 1,684,059 to 1,685,585 _RS27220 Position (kb) 1682 1683 1684 1685Strain fitness (log2 ratio) -1 0 1at 1681.997 kb on - strand, within BPHYT_RS27210at 1682.108 kb on - strand, within BPHYT_RS27210at 1682.620 kb on + strand, within BPHYT_RS27210at 1684.624 kb on - strand, within BPHYT_RS27220

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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1,681,997 - BPHYT_RS27210 0.13 -0.5
1,682,108 - BPHYT_RS27210 0.24 -1.0
1,682,620 + BPHYT_RS27210 0.75 -0.0
1,684,624 - BPHYT_RS27220 0.37 +0.9

Or see this region's nucleotide sequence