Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25260

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25255 and BPHYT_RS25260 are separated by 110 nucleotidesBPHYT_RS25260 and BPHYT_RS25265 are separated by 33 nucleotides BPHYT_RS25255: BPHYT_RS25255 - LysR family transcriptional regulator, at 1,240,585 to 1,241,505 _RS25255 BPHYT_RS25260: BPHYT_RS25260 - glutathione S-transferase, at 1,241,616 to 1,242,257 _RS25260 BPHYT_RS25265: BPHYT_RS25265 - pyridoxamine 5'-phosphate oxidase, at 1,242,291 to 1,244,339 _RS25265 Position (kb) 1241 1242 1243Strain fitness (log2 ratio) -1 0 1at 1242.046 kb on + strand, within BPHYT_RS25260at 1242.302 kb on + strandat 1242.765 kb on - strand, within BPHYT_RS25265at 1243.093 kb on - strand, within BPHYT_RS25265

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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1,242,046 + BPHYT_RS25260 0.67 +0.2
1,242,302 + +0.4
1,242,765 - BPHYT_RS25265 0.23 -0.8
1,243,093 - BPHYT_RS25265 0.39 +1.0

Or see this region's nucleotide sequence