Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06915 and BPHYT_RS06920 are separated by 69 nucleotides BPHYT_RS06920 and BPHYT_RS06925 overlap by 4 nucleotides BPHYT_RS06925 and BPHYT_RS06930 are separated by 291 nucleotides BPHYT_RS06930 and BPHYT_RS06935 are separated by 193 nucleotides
BPHYT_RS06915: BPHYT_RS06915 - hypothetical protein, at 1,567,199 to 1,567,531
_RS06915
BPHYT_RS06920: BPHYT_RS06920 - iron permease FTR1, at 1,567,601 to 1,568,446
_RS06920
BPHYT_RS06925: BPHYT_RS06925 - membrane protein, at 1,568,443 to 1,569,849
_RS06925
BPHYT_RS06930: BPHYT_RS06930 - hypothetical protein, at 1,570,141 to 1,570,401
_RS06930
BPHYT_RS06935: BPHYT_RS06935 - hypothetical protein, at 1,570,595 to 1,571,077
_RS06935
Position (kb) 1568
1569
1570 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1567.529 kb on + strand at 1567.530 kb on - strand at 1567.614 kb on + strand at 1567.615 kb on - strand at 1567.716 kb on - strand, within BPHYT_RS06920 at 1567.968 kb on + strand, within BPHYT_RS06920 at 1567.968 kb on + strand, within BPHYT_RS06920 at 1568.015 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.106 kb on - strand, within BPHYT_RS06920 at 1568.107 kb on + strand, within BPHYT_RS06920 at 1568.108 kb on - strand, within BPHYT_RS06920 at 1568.384 kb on + strand at 1568.448 kb on + strand at 1568.548 kb on + strand at 1568.711 kb on + strand, within BPHYT_RS06925 at 1568.711 kb on + strand, within BPHYT_RS06925 at 1568.827 kb on + strand, within BPHYT_RS06925 at 1568.848 kb on + strand, within BPHYT_RS06925 at 1568.950 kb on + strand, within BPHYT_RS06925 at 1568.951 kb on - strand, within BPHYT_RS06925 at 1569.108 kb on + strand, within BPHYT_RS06925 at 1569.132 kb on + strand, within BPHYT_RS06925 at 1569.133 kb on - strand, within BPHYT_RS06925 at 1569.457 kb on + strand, within BPHYT_RS06925 at 1569.457 kb on + strand, within BPHYT_RS06925 at 1569.482 kb on - strand, within BPHYT_RS06925 at 1569.847 kb on + strand at 1569.848 kb on - strand at 1569.865 kb on + strand at 1569.879 kb on + strand at 1569.963 kb on + strand at 1569.964 kb on - strand at 1570.048 kb on - strand at 1570.048 kb on - strand at 1570.079 kb on - strand at 1570.116 kb on - strand at 1570.125 kb on + strand at 1570.126 kb on - strand at 1570.126 kb on - strand at 1570.126 kb on - strand at 1570.126 kb on - strand at 1570.142 kb on + strand at 1570.187 kb on + strand, within BPHYT_RS06930 at 1570.222 kb on - strand, within BPHYT_RS06930 at 1570.446 kb on - strand at 1570.510 kb on - strand at 1570.812 kb on + strand, within BPHYT_RS06935 at 1570.837 kb on - strand, within BPHYT_RS06935
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 1,567,529 + -3.0 1,567,530 - -0.7 1,567,614 + +0.3 1,567,615 - -0.5 1,567,716 - BPHYT_RS06920 0.14 -4.0 1,567,968 + BPHYT_RS06920 0.43 -0.7 1,567,968 + BPHYT_RS06920 0.43 +0.1 1,568,015 + BPHYT_RS06920 0.49 -0.7 1,568,105 + BPHYT_RS06920 0.60 -0.2 1,568,105 + BPHYT_RS06920 0.60 -1.2 1,568,105 + BPHYT_RS06920 0.60 -0.3 1,568,106 - BPHYT_RS06920 0.60 -1.0 1,568,107 + BPHYT_RS06920 0.60 -2.0 1,568,108 - BPHYT_RS06920 0.60 -0.5 1,568,384 + -0.2 1,568,448 + -0.8 1,568,548 + -1.1 1,568,711 + BPHYT_RS06925 0.19 -2.8 1,568,711 + BPHYT_RS06925 0.19 -0.8 1,568,827 + BPHYT_RS06925 0.27 +0.0 1,568,848 + BPHYT_RS06925 0.29 -3.0 1,568,950 + BPHYT_RS06925 0.36 +0.7 1,568,951 - BPHYT_RS06925 0.36 +0.1 1,569,108 + BPHYT_RS06925 0.47 -0.5 1,569,132 + BPHYT_RS06925 0.49 -0.9 1,569,133 - BPHYT_RS06925 0.49 -0.8 1,569,457 + BPHYT_RS06925 0.72 -1.2 1,569,457 + BPHYT_RS06925 0.72 +0.2 1,569,482 - BPHYT_RS06925 0.74 +0.6 1,569,847 + +0.9 1,569,848 - +0.1 1,569,865 + +0.1 1,569,879 + -0.2 1,569,963 + +0.5 1,569,964 - -2.4 1,570,048 - -1.9 1,570,048 - +0.1 1,570,079 - -0.1 1,570,116 - +0.1 1,570,125 + -0.0 1,570,126 - +0.5 1,570,126 - -0.1 1,570,126 - +0.5 1,570,126 - -0.7 1,570,142 + -0.1 1,570,187 + BPHYT_RS06930 0.18 -0.2 1,570,222 - BPHYT_RS06930 0.31 +0.1 1,570,446 - -0.2 1,570,510 - +2.2 1,570,812 + BPHYT_RS06935 0.45 +0.3 1,570,837 - BPHYT_RS06935 0.50 +1.0
Or see this region's nucleotide sequence