Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03260 and BPHYT_RS03265 are separated by 195 nucleotides BPHYT_RS03265 and BPHYT_RS03270 are separated by 68 nucleotides BPHYT_RS03270 and BPHYT_RS03275 are separated by 285 nucleotides
BPHYT_RS03260: BPHYT_RS03260 - glycine cleavage system regulatory protein, at 733,931 to 734,860
_RS03260
BPHYT_RS03265: BPHYT_RS03265 - hypothetical protein, at 735,056 to 735,394
_RS03265
BPHYT_RS03270: BPHYT_RS03270 - acyl-CoA hydrolase, at 735,463 to 735,858
_RS03270
BPHYT_RS03275: BPHYT_RS03275 - metal ABC transporter permease, at 736,144 to 738,033
_RS03275
Position (kb) 735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 734.291 kb on + strand, within BPHYT_RS03260 at 734.291 kb on + strand, within BPHYT_RS03260 at 734.729 kb on + strand, within BPHYT_RS03260 at 734.813 kb on + strand at 734.813 kb on + strand at 734.813 kb on + strand at 734.813 kb on + strand at 734.814 kb on - strand at 734.814 kb on - strand at 734.866 kb on - strand at 734.878 kb on - strand at 734.908 kb on - strand at 734.908 kb on - strand at 735.105 kb on + strand, within BPHYT_RS03265 at 735.105 kb on + strand, within BPHYT_RS03265 at 735.106 kb on - strand, within BPHYT_RS03265 at 735.403 kb on + strand at 735.403 kb on + strand at 735.404 kb on - strand at 735.404 kb on - strand at 735.404 kb on - strand at 735.404 kb on - strand at 735.515 kb on + strand, within BPHYT_RS03270 at 735.516 kb on - strand, within BPHYT_RS03270 at 735.516 kb on - strand, within BPHYT_RS03270 at 735.576 kb on - strand, within BPHYT_RS03270 at 735.604 kb on - strand, within BPHYT_RS03270 at 735.629 kb on + strand, within BPHYT_RS03270 at 735.630 kb on - strand, within BPHYT_RS03270 at 735.849 kb on + strand at 735.849 kb on + strand at 735.849 kb on + strand at 735.850 kb on - strand at 736.011 kb on - strand at 736.011 kb on - strand at 736.011 kb on - strand at 736.240 kb on + strand at 736.240 kb on + strand at 736.240 kb on + strand at 736.240 kb on + strand at 736.241 kb on - strand at 736.241 kb on - strand at 736.242 kb on + strand at 736.242 kb on + strand at 736.243 kb on - strand at 736.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 734,291 + BPHYT_RS03260 0.39 -0.7 734,291 + BPHYT_RS03260 0.39 +0.0 734,729 + BPHYT_RS03260 0.86 +0.3 734,813 + +0.0 734,813 + +0.2 734,813 + -0.3 734,813 + -0.4 734,814 - -0.1 734,814 - +0.9 734,866 - -1.0 734,878 - -0.7 734,908 - -1.1 734,908 - +0.4 735,105 + BPHYT_RS03265 0.14 -0.6 735,105 + BPHYT_RS03265 0.14 +0.9 735,106 - BPHYT_RS03265 0.15 +0.3 735,403 + -0.2 735,403 + +0.2 735,404 - -0.3 735,404 - -0.0 735,404 - +0.2 735,404 - +0.2 735,515 + BPHYT_RS03270 0.13 -0.3 735,516 - BPHYT_RS03270 0.13 -0.4 735,516 - BPHYT_RS03270 0.13 -0.3 735,576 - BPHYT_RS03270 0.29 +0.0 735,604 - BPHYT_RS03270 0.36 +0.5 735,629 + BPHYT_RS03270 0.42 -0.0 735,630 - BPHYT_RS03270 0.42 -1.7 735,849 + +0.3 735,849 + -0.4 735,849 + -1.6 735,850 - -0.5 736,011 - +1.4 736,011 - -0.3 736,011 - +0.2 736,240 + -3.6 736,240 + -0.1 736,240 + -0.3 736,240 + +0.0 736,241 - +0.3 736,241 - +0.1 736,242 + +0.9 736,242 + -0.3 736,243 - +0.5 736,243 - -0.3
Or see this region's nucleotide sequence