Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02815 and BPHYT_RS02820 are separated by 112 nucleotides BPHYT_RS02820 and BPHYT_RS02825 are separated by 63 nucleotides BPHYT_RS02825 and BPHYT_RS02830 are separated by 77 nucleotides
BPHYT_RS02815: BPHYT_RS02815 - methyltransferase, at 631,340 to 631,954
_RS02815
BPHYT_RS02820: BPHYT_RS02820 - phosphopantetheine adenylyltransferase, at 632,067 to 632,582
_RS02820
BPHYT_RS02825: BPHYT_RS02825 - ferredoxin, at 632,646 to 632,903
_RS02825
BPHYT_RS02830: BPHYT_RS02830 - aspartate aminotransferase, at 632,981 to 634,060
_RS02830
Position (kb) 632
633 Strain fitness (log2 ratio) -2
-1
0
1
2 at 631.744 kb on - strand, within BPHYT_RS02815 at 631.830 kb on - strand, within BPHYT_RS02815 at 631.830 kb on - strand, within BPHYT_RS02815 at 631.833 kb on + strand, within BPHYT_RS02815 at 631.834 kb on - strand, within BPHYT_RS02815 at 631.903 kb on + strand at 631.952 kb on + strand at 632.645 kb on + strand at 632.645 kb on + strand at 632.796 kb on - strand, within BPHYT_RS02825 at 632.796 kb on - strand, within BPHYT_RS02825 at 632.819 kb on + strand, within BPHYT_RS02825 at 632.871 kb on + strand, within BPHYT_RS02825 at 632.871 kb on + strand, within BPHYT_RS02825 at 632.907 kb on - strand at 632.935 kb on + strand at 632.935 kb on + strand at 632.936 kb on - strand at 632.936 kb on - strand at 632.972 kb on + strand at 632.972 kb on + strand at 632.991 kb on + strand at 632.991 kb on + strand at 632.992 kb on - strand at 633.129 kb on - strand, within BPHYT_RS02830 at 633.147 kb on + strand, within BPHYT_RS02830 at 633.147 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.502 kb on - strand, within BPHYT_RS02830 at 633.502 kb on - strand, within BPHYT_RS02830 at 633.628 kb on + strand, within BPHYT_RS02830 at 633.628 kb on + strand, within BPHYT_RS02830 at 633.628 kb on + strand, within BPHYT_RS02830 at 633.629 kb on - strand, within BPHYT_RS02830 at 633.629 kb on - strand, within BPHYT_RS02830 at 633.629 kb on - strand, within BPHYT_RS02830 at 633.629 kb on - strand, within BPHYT_RS02830 at 633.631 kb on - strand, within BPHYT_RS02830 at 633.702 kb on + strand, within BPHYT_RS02830 at 633.703 kb on - strand, within BPHYT_RS02830 at 633.703 kb on - strand, within BPHYT_RS02830 at 633.712 kb on - strand, within BPHYT_RS02830 at 633.712 kb on - strand, within BPHYT_RS02830 at 633.720 kb on + strand, within BPHYT_RS02830 at 633.720 kb on + strand, within BPHYT_RS02830 at 633.720 kb on + strand, within BPHYT_RS02830
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 631,744 - BPHYT_RS02815 0.66 -0.3 631,830 - BPHYT_RS02815 0.80 -1.2 631,830 - BPHYT_RS02815 0.80 -1.2 631,833 + BPHYT_RS02815 0.80 +0.0 631,834 - BPHYT_RS02815 0.80 -0.4 631,903 + -0.2 631,952 + -0.5 632,645 + +0.5 632,645 + -0.2 632,796 - BPHYT_RS02825 0.58 -2.6 632,796 - BPHYT_RS02825 0.58 -2.3 632,819 + BPHYT_RS02825 0.67 -2.2 632,871 + BPHYT_RS02825 0.87 -1.3 632,871 + BPHYT_RS02825 0.87 +0.4 632,907 - +0.4 632,935 + +1.8 632,935 + +0.8 632,936 - -0.2 632,936 - -0.1 632,972 + -0.6 632,972 + +0.7 632,991 + -0.7 632,991 + +0.3 632,992 - -0.3 633,129 - BPHYT_RS02830 0.14 -0.1 633,147 + BPHYT_RS02830 0.15 -0.1 633,147 + BPHYT_RS02830 0.15 -0.6 633,501 + BPHYT_RS02830 0.48 +0.2 633,501 + BPHYT_RS02830 0.48 +0.4 633,501 + BPHYT_RS02830 0.48 -0.4 633,501 + BPHYT_RS02830 0.48 -0.2 633,501 + BPHYT_RS02830 0.48 +0.0 633,501 + BPHYT_RS02830 0.48 -1.2 633,502 - BPHYT_RS02830 0.48 -0.3 633,502 - BPHYT_RS02830 0.48 +0.1 633,628 + BPHYT_RS02830 0.60 -0.2 633,628 + BPHYT_RS02830 0.60 +1.4 633,628 + BPHYT_RS02830 0.60 -0.1 633,629 - BPHYT_RS02830 0.60 -0.0 633,629 - BPHYT_RS02830 0.60 +1.9 633,629 - BPHYT_RS02830 0.60 -0.5 633,629 - BPHYT_RS02830 0.60 +0.3 633,631 - BPHYT_RS02830 0.60 +0.6 633,702 + BPHYT_RS02830 0.67 +0.4 633,703 - BPHYT_RS02830 0.67 -0.5 633,703 - BPHYT_RS02830 0.67 +1.1 633,712 - BPHYT_RS02830 0.68 +0.2 633,712 - BPHYT_RS02830 0.68 +0.5 633,720 + BPHYT_RS02830 0.68 +0.7 633,720 + BPHYT_RS02830 0.68 +0.4 633,720 + BPHYT_RS02830 0.68 +0.7
Or see this region's nucleotide sequence