Strain Fitness in Sinorhizobium meliloti 1021 around SMc05003

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00023 and SMc05003 are separated by 80 nucleotidesSMc05003 and SMc00024 overlap by 13 nucleotides SMc00023: SMc00023 - hypothetical protein, at 1,018,305 to 1,019,114 SMc00023 SMc05003: SMc05003 - hypothetical protein, at 1,019,195 to 1,019,416 SMc05003 SMc00024: SMc00024 - chromosome partition protein, at 1,019,404 to 1,022,874 SMc00024 Position (kb) 1019 1020Strain fitness (log2 ratio) -2 -1 0 1at 1018.286 kb on + strandat 1018.286 kb on + strandat 1019.211 kb on + strandat 1019.212 kb on - strandat 1019.212 kb on - strandat 1019.569 kb on + strandat 1020.003 kb on + strand, within SMc00024at 1020.003 kb on + strand, within SMc00024

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,018,286 + -0.9
1,018,286 + +0.6
1,019,211 + -1.8
1,019,212 - +0.6
1,019,212 - -0.4
1,019,569 + +0.7
1,020,003 + SMc00024 0.17 +1.5
1,020,003 + SMc00024 0.17 -1.1

Or see this region's nucleotide sequence