Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00356 and SMc00357 are separated by 161 nucleotides SMc00357 and SMc00358 are separated by 212 nucleotides SMc00358 and SMc00359 are separated by 274 nucleotides
SMc00356: SMc00356 - lysyl-tRNA synthetase, at 311,037 to 312,089
SMc00356
SMc00357: SMc00357 - elongation factor P, at 312,251 to 312,820
SMc00357
SMc00358: SMc00358 - cyclopropane-fatty-acyl-phospholipid synthase, at 313,033 to 314,274
SMc00358
SMc00359: SMc00359 - hypothetical protein, at 314,549 to 315,532
SMc00359
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 312.140 kb on + strand at 312.140 kb on + strand at 312.140 kb on + strand at 312.229 kb on - strand at 312.237 kb on + strand at 312.893 kb on - strand at 312.991 kb on - strand at 312.991 kb on - strand at 312.991 kb on - strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.051 kb on - strand at 313.083 kb on + strand at 313.216 kb on + strand, within SMc00358 at 313.217 kb on - strand, within SMc00358 at 313.217 kb on - strand, within SMc00358 at 313.217 kb on - strand, within SMc00358 at 313.217 kb on - strand, within SMc00358 at 313.219 kb on - strand, within SMc00358 at 313.219 kb on - strand, within SMc00358 at 313.221 kb on - strand, within SMc00358 at 313.405 kb on + strand, within SMc00358 at 313.426 kb on + strand, within SMc00358 at 313.427 kb on - strand, within SMc00358 at 313.456 kb on + strand, within SMc00358 at 313.457 kb on - strand, within SMc00358 at 313.457 kb on - strand, within SMc00358 at 313.601 kb on - strand, within SMc00358 at 313.601 kb on - strand, within SMc00358 at 313.601 kb on - strand, within SMc00358 at 313.799 kb on - strand, within SMc00358 at 313.872 kb on + strand, within SMc00358 at 313.872 kb on + strand, within SMc00358 at 313.873 kb on - strand, within SMc00358 at 313.912 kb on + strand, within SMc00358 at 313.913 kb on - strand, within SMc00358 at 313.914 kb on + strand, within SMc00358 at 313.915 kb on - strand, within SMc00358 at 314.014 kb on + strand, within SMc00358 at 314.014 kb on + strand, within SMc00358 at 314.080 kb on + strand, within SMc00358 at 314.113 kb on + strand, within SMc00358 at 314.114 kb on - strand, within SMc00358 at 314.114 kb on - strand, within SMc00358 at 314.166 kb on + strand at 314.166 kb on + strand at 314.236 kb on + strand at 314.236 kb on + strand at 314.237 kb on - strand at 314.237 kb on - strand at 314.237 kb on - strand at 314.273 kb on - strand at 314.327 kb on + strand at 314.327 kb on + strand at 314.328 kb on - strand at 314.446 kb on + strand at 314.447 kb on - strand at 314.448 kb on + strand at 314.449 kb on - strand at 314.522 kb on + strand at 314.529 kb on - strand at 314.654 kb on + strand, within SMc00359 at 314.654 kb on + strand, within SMc00359 at 314.655 kb on - strand, within SMc00359 at 314.688 kb on - strand, within SMc00359 at 314.798 kb on - strand, within SMc00359 at 315.029 kb on - strand, within SMc00359 at 315.081 kb on + strand, within SMc00359 at 315.082 kb on - strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.090 kb on - strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.176 kb on - strand, within SMc00359 at 315.176 kb on - strand, within SMc00359
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 312,140 + -0.2 312,140 + -2.1 312,140 + -1.2 312,229 - -2.8 312,237 + +0.1 312,893 - -0.1 312,991 - -0.3 312,991 - +0.5 312,991 - +0.9 313,050 + +0.1 313,050 + +0.4 313,050 + +0.2 313,050 + +0.2 313,051 - +2.1 313,083 + +0.2 313,216 + SMc00358 0.15 +0.5 313,217 - SMc00358 0.15 -0.6 313,217 - SMc00358 0.15 +0.6 313,217 - SMc00358 0.15 +0.7 313,217 - SMc00358 0.15 +0.9 313,219 - SMc00358 0.15 +0.5 313,219 - SMc00358 0.15 +0.4 313,221 - SMc00358 0.15 +1.1 313,405 + SMc00358 0.30 -0.4 313,426 + SMc00358 0.32 +0.0 313,427 - SMc00358 0.32 +0.6 313,456 + SMc00358 0.34 +0.2 313,457 - SMc00358 0.34 +0.3 313,457 - SMc00358 0.34 -0.1 313,601 - SMc00358 0.46 +0.3 313,601 - SMc00358 0.46 -0.1 313,601 - SMc00358 0.46 +0.5 313,799 - SMc00358 0.62 +0.2 313,872 + SMc00358 0.68 +0.3 313,872 + SMc00358 0.68 +0.2 313,873 - SMc00358 0.68 +0.4 313,912 + SMc00358 0.71 +0.1 313,913 - SMc00358 0.71 +0.1 313,914 + SMc00358 0.71 -0.1 313,915 - SMc00358 0.71 +2.1 314,014 + SMc00358 0.79 +0.4 314,014 + SMc00358 0.79 -0.2 314,080 + SMc00358 0.84 +0.5 314,113 + SMc00358 0.87 +0.8 314,114 - SMc00358 0.87 +0.5 314,114 - SMc00358 0.87 +0.4 314,166 + +0.1 314,166 + +0.2 314,236 + -0.1 314,236 + +0.3 314,237 - -0.0 314,237 - +0.2 314,237 - -0.7 314,273 - +0.3 314,327 + +0.8 314,327 + +0.0 314,328 - +0.4 314,446 + +0.1 314,447 - -0.8 314,448 + +0.2 314,449 - +0.5 314,522 + +0.1 314,529 - +0.5 314,654 + SMc00359 0.11 -0.0 314,654 + SMc00359 0.11 +0.6 314,655 - SMc00359 0.11 -0.4 314,688 - SMc00359 0.14 -0.3 314,798 - SMc00359 0.25 +0.2 315,029 - SMc00359 0.49 -0.2 315,081 + SMc00359 0.54 -0.8 315,082 - SMc00359 0.54 -0.0 315,089 + SMc00359 0.55 +0.4 315,089 + SMc00359 0.55 +0.8 315,089 + SMc00359 0.55 -0.3 315,089 + SMc00359 0.55 -0.3 315,089 + SMc00359 0.55 +0.6 315,089 + SMc00359 0.55 -0.3 315,089 + SMc00359 0.55 -0.2 315,089 + SMc00359 0.55 -0.1 315,090 - SMc00359 0.55 +0.2 315,175 + SMc00359 0.64 +1.0 315,175 + SMc00359 0.64 -0.1 315,175 + SMc00359 0.64 -0.5 315,175 + SMc00359 0.64 -0.1 315,176 - SMc00359 0.64 -0.2 315,176 - SMc00359 0.64 -0.8
Or see this region's nucleotide sequence