Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20073 and SM_b20074 are separated by 195 nucleotides SM_b20074 and SM_b20075 are separated by 48 nucleotides SM_b20075 and SM_b20076 are separated by 98 nucleotides SM_b20076 and SM_b20077 are separated by 99 nucleotides
SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188
_b20073
SM_b20074: SM_b20074 - hypothetical protein, at 83,384 to 83,626
_b20074
SM_b20075: SM_b20075 - hypothetical protein, at 83,675 to 83,866
_b20075
SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981
_b20076
SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745
_b20077
Position (kb)
83
84
85 Strain fitness (log2 ratio)
-1
0
1 at 82.971 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 83.268 kb on - strand at 83.380 kb on + strand at 83.380 kb on + strand at 83.381 kb on - strand at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.759 kb on + strand, within SM_b20075 at 83.760 kb on - strand, within SM_b20075 at 83.927 kb on + strand at 83.927 kb on + strand at 83.928 kb on - strand at 83.928 kb on - strand at 83.964 kb on + strand at 83.965 kb on - strand at 83.965 kb on - strand at 84.215 kb on + strand, within SM_b20076 at 84.517 kb on + strand, within SM_b20076 at 84.562 kb on + strand, within SM_b20076 at 84.563 kb on - strand, within SM_b20076 at 84.598 kb on + strand, within SM_b20076 at 84.598 kb on + strand, within SM_b20076 at 84.599 kb on - strand, within SM_b20076 at 85.032 kb on + strand at 85.033 kb on - strand at 85.033 kb on - strand at 85.035 kb on + strand at 85.035 kb on + strand at 85.035 kb on + strand at 85.036 kb on - strand at 85.036 kb on - strand at 85.036 kb on - strand at 85.384 kb on - strand, within SM_b20077 at 85.384 kb on - strand, within SM_b20077 at 85.606 kb on + strand, within SM_b20077 at 85.606 kb on + strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.826 kb on - strand, within SM_b20077
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 82,971 + SM_b20073 0.75 +0.7 82,971 + SM_b20073 0.75 +0.4 82,978 + SM_b20073 0.75 +1.4 82,978 + SM_b20073 0.75 -0.2 83,268 - -0.0 83,380 + -1.5 83,380 + +0.1 83,381 - -0.0 83,555 + SM_b20074 0.70 -0.3 83,555 + SM_b20074 0.70 -0.5 83,555 + SM_b20074 0.70 +0.1 83,555 + SM_b20074 0.70 +0.4 83,556 - SM_b20074 0.71 +0.6 83,556 - SM_b20074 0.71 -0.3 83,556 - SM_b20074 0.71 +0.7 83,759 + SM_b20075 0.44 +0.6 83,760 - SM_b20075 0.44 -0.2 83,927 + +1.0 83,927 + +0.0 83,928 - +0.2 83,928 - +1.0 83,964 + +1.0 83,965 - -0.3 83,965 - -0.7 84,215 + SM_b20076 0.25 -0.4 84,517 + SM_b20076 0.54 -0.6 84,562 + SM_b20076 0.59 -0.9 84,563 - SM_b20076 0.59 -0.2 84,598 + SM_b20076 0.62 +0.1 84,598 + SM_b20076 0.62 -0.3 84,599 - SM_b20076 0.62 -0.6 85,032 + -0.3 85,033 - -0.0 85,033 - -0.3 85,035 + +0.0 85,035 + -0.3 85,035 + -0.4 85,036 - -0.5 85,036 - +0.0 85,036 - +0.7 85,384 - SM_b20077 0.18 -0.3 85,384 - SM_b20077 0.18 -0.0 85,606 + SM_b20077 0.32 +0.8 85,606 + SM_b20077 0.32 -0.4 85,607 - SM_b20077 0.32 +0.1 85,607 - SM_b20077 0.32 +0.7 85,607 - SM_b20077 0.32 -0.7 85,826 - SM_b20077 0.45 +0.2
Or see this region's nucleotide sequence