Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_839 and Pf6N2E2_840 are separated by 574 nucleotides Pf6N2E2_840 and Pf6N2E2_841 are separated by 10 nucleotides Pf6N2E2_841 and Pf6N2E2_842 are separated by 365 nucleotides
Pf6N2E2_839 - Alkaline phosphatase (EC 3.1.3.1), at 982,139 to 984,760
_839
Pf6N2E2_840 - Alcohol dehydrogenase (EC 1.1.1.1), at 985,335 to 986,321
_840
Pf6N2E2_841 - hypothetical protein, at 986,332 to 986,493
_841
Pf6N2E2_842 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 986,859 to 987,566
_842
Position (kb) 985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2 at 984.478 kb on + strand, within Pf6N2E2_839 at 984.482 kb on - strand, within Pf6N2E2_839 at 984.615 kb on + strand at 984.671 kb on + strand at 984.671 kb on + strand at 984.671 kb on + strand at 984.671 kb on + strand at 984.736 kb on + strand at 984.736 kb on + strand at 984.934 kb on + strand at 984.934 kb on + strand at 984.935 kb on - strand at 984.935 kb on - strand at 984.935 kb on - strand at 984.938 kb on + strand at 984.981 kb on + strand at 985.006 kb on + strand at 985.007 kb on - strand at 985.007 kb on - strand at 985.007 kb on - strand at 985.007 kb on - strand at 985.018 kb on + strand at 985.018 kb on + strand at 985.115 kb on - strand at 985.116 kb on + strand at 985.117 kb on - strand at 985.117 kb on - strand at 985.158 kb on + strand at 985.171 kb on + strand at 985.187 kb on + strand at 985.461 kb on + strand, within Pf6N2E2_840 at 985.461 kb on + strand, within Pf6N2E2_840 at 985.461 kb on + strand, within Pf6N2E2_840 at 985.461 kb on + strand, within Pf6N2E2_840 at 985.462 kb on - strand, within Pf6N2E2_840 at 985.462 kb on - strand, within Pf6N2E2_840 at 985.462 kb on - strand, within Pf6N2E2_840 at 985.462 kb on - strand, within Pf6N2E2_840 at 985.669 kb on + strand, within Pf6N2E2_840 at 985.684 kb on + strand, within Pf6N2E2_840 at 985.684 kb on + strand, within Pf6N2E2_840 at 985.685 kb on - strand, within Pf6N2E2_840 at 985.725 kb on + strand, within Pf6N2E2_840 at 985.882 kb on + strand, within Pf6N2E2_840 at 985.882 kb on + strand, within Pf6N2E2_840 at 985.882 kb on + strand, within Pf6N2E2_840 at 985.883 kb on - strand, within Pf6N2E2_840 at 986.459 kb on + strand, within Pf6N2E2_841 at 986.459 kb on + strand, within Pf6N2E2_841 at 986.460 kb on - strand, within Pf6N2E2_841 at 986.491 kb on + strand at 986.491 kb on + strand at 986.491 kb on + strand at 986.491 kb on + strand at 986.505 kb on + strand at 986.505 kb on + strand at 986.505 kb on + strand at 986.505 kb on + strand at 986.506 kb on - strand at 986.594 kb on + strand at 986.594 kb on + strand at 986.598 kb on + strand at 986.599 kb on - strand at 986.599 kb on - strand at 986.735 kb on + strand at 986.735 kb on + strand at 986.735 kb on + strand at 986.735 kb on + strand at 986.735 kb on + strand at 986.736 kb on - strand at 986.737 kb on + strand at 986.737 kb on + strand at 986.774 kb on - strand at 986.779 kb on + strand at 986.779 kb on + strand at 986.779 kb on + strand at 986.779 kb on + strand at 986.780 kb on - strand at 986.837 kb on + strand at 986.837 kb on + strand at 986.837 kb on + strand at 986.837 kb on + strand at 986.838 kb on - strand at 986.838 kb on - strand at 986.838 kb on - strand at 986.838 kb on - strand at 986.841 kb on + strand at 986.841 kb on + strand at 986.842 kb on - strand at 987.006 kb on + strand, within Pf6N2E2_842 at 987.006 kb on + strand, within Pf6N2E2_842 at 987.006 kb on + strand, within Pf6N2E2_842 at 987.006 kb on + strand, within Pf6N2E2_842 at 987.007 kb on - strand, within Pf6N2E2_842 at 987.102 kb on + strand, within Pf6N2E2_842 at 987.103 kb on - strand, within Pf6N2E2_842 at 987.222 kb on - strand, within Pf6N2E2_842
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 984,478 + Pf6N2E2_839 0.89 -1.6 984,482 - Pf6N2E2_839 0.89 -1.0 984,615 + -0.6 984,671 + +0.4 984,671 + +0.9 984,671 + -0.9 984,671 + -0.4 984,736 + +0.4 984,736 + -0.0 984,934 + -0.9 984,934 + -0.8 984,935 - +0.7 984,935 - +0.3 984,935 - -1.0 984,938 + +0.1 984,981 + -0.0 985,006 + +0.8 985,007 - +0.5 985,007 - +0.4 985,007 - +0.8 985,007 - +0.1 985,018 + +0.3 985,018 + -1.5 985,115 - -0.2 985,116 + +0.5 985,117 - +0.4 985,117 - +0.8 985,158 + +0.5 985,171 + -2.3 985,187 + -0.6 985,461 + Pf6N2E2_840 0.13 -0.4 985,461 + Pf6N2E2_840 0.13 +1.2 985,461 + Pf6N2E2_840 0.13 +0.7 985,461 + Pf6N2E2_840 0.13 +0.7 985,462 - Pf6N2E2_840 0.13 +0.2 985,462 - Pf6N2E2_840 0.13 +1.4 985,462 - Pf6N2E2_840 0.13 +1.3 985,462 - Pf6N2E2_840 0.13 +1.9 985,669 + Pf6N2E2_840 0.34 +1.5 985,684 + Pf6N2E2_840 0.35 +1.0 985,684 + Pf6N2E2_840 0.35 +1.3 985,685 - Pf6N2E2_840 0.35 +2.6 985,725 + Pf6N2E2_840 0.40 +2.1 985,882 + Pf6N2E2_840 0.55 +1.3 985,882 + Pf6N2E2_840 0.55 +0.3 985,882 + Pf6N2E2_840 0.55 +2.0 985,883 - Pf6N2E2_840 0.56 +1.1 986,459 + Pf6N2E2_841 0.78 +0.7 986,459 + Pf6N2E2_841 0.78 +0.1 986,460 - Pf6N2E2_841 0.79 +0.8 986,491 + +1.2 986,491 + -1.6 986,491 + +0.6 986,491 + +0.2 986,505 + -1.2 986,505 + -1.8 986,505 + -1.0 986,505 + +0.9 986,506 - -0.6 986,594 + +0.6 986,594 + -0.4 986,598 + -1.4 986,599 - +1.0 986,599 - -0.2 986,735 + +1.3 986,735 + -0.4 986,735 + +0.3 986,735 + +1.4 986,735 + -0.1 986,736 - -2.0 986,737 + +0.4 986,737 + +0.4 986,774 - +0.5 986,779 + -1.7 986,779 + +1.2 986,779 + -2.2 986,779 + -0.3 986,780 - +0.1 986,837 + +0.7 986,837 + -0.3 986,837 + +1.7 986,837 + -0.9 986,838 - -0.1 986,838 - -1.1 986,838 - +0.8 986,838 - -1.0 986,841 + -0.6 986,841 + -1.9 986,842 - +1.9 987,006 + Pf6N2E2_842 0.21 -0.8 987,006 + Pf6N2E2_842 0.21 +0.2 987,006 + Pf6N2E2_842 0.21 +1.7 987,006 + Pf6N2E2_842 0.21 +0.7 987,007 - Pf6N2E2_842 0.21 -0.9 987,102 + Pf6N2E2_842 0.34 -0.2 987,103 - Pf6N2E2_842 0.34 -1.6 987,222 - Pf6N2E2_842 0.51 -0.5
Or see this region's nucleotide sequence