Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_602 and Pf6N2E2_603 overlap by 4 nucleotides Pf6N2E2_603 and Pf6N2E2_604 are separated by 13 nucleotides Pf6N2E2_604 and Pf6N2E2_605 are separated by 403 nucleotides
Pf6N2E2_602 - FIG00954117: hypothetical protein, at 677,015 to 677,275
_602
Pf6N2E2_603 - FIG00953934: hypothetical protein, at 677,272 to 678,102
_603
Pf6N2E2_604 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 678,116 to 680,773
_604
Pf6N2E2_605 - FIG002465: BNR repeat protein, at 681,177 to 682,214
_605
Position (kb) 678
679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 677.199 kb on - strand, within Pf6N2E2_602 at 677.199 kb on - strand, within Pf6N2E2_602 at 677.338 kb on + strand at 677.339 kb on - strand at 677.408 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 678.031 kb on + strand at 678.032 kb on - strand at 678.061 kb on - strand at 678.067 kb on - strand at 678.070 kb on + strand at 678.070 kb on + strand at 678.070 kb on + strand at 678.071 kb on - strand at 678.071 kb on - strand at 678.071 kb on - strand at 678.080 kb on - strand at 678.100 kb on + strand at 678.101 kb on - strand at 678.101 kb on - strand at 678.101 kb on - strand at 678.101 kb on - strand at 678.143 kb on + strand at 678.155 kb on + strand at 678.170 kb on + strand at 678.171 kb on - strand at 678.353 kb on + strand at 678.354 kb on - strand at 678.462 kb on - strand, within Pf6N2E2_604 at 678.462 kb on - strand, within Pf6N2E2_604 at 678.521 kb on + strand, within Pf6N2E2_604 at 678.521 kb on + strand, within Pf6N2E2_604 at 678.522 kb on - strand, within Pf6N2E2_604 at 678.525 kb on - strand, within Pf6N2E2_604 at 678.525 kb on - strand, within Pf6N2E2_604 at 678.686 kb on + strand, within Pf6N2E2_604 at 678.686 kb on + strand, within Pf6N2E2_604 at 678.687 kb on - strand, within Pf6N2E2_604 at 678.687 kb on - strand, within Pf6N2E2_604 at 678.773 kb on + strand, within Pf6N2E2_604 at 678.773 kb on + strand, within Pf6N2E2_604 at 678.773 kb on + strand, within Pf6N2E2_604 at 678.774 kb on - strand, within Pf6N2E2_604 at 678.774 kb on - strand, within Pf6N2E2_604 at 678.852 kb on + strand, within Pf6N2E2_604 at 678.853 kb on - strand, within Pf6N2E2_604 at 678.854 kb on + strand, within Pf6N2E2_604 at 678.855 kb on - strand, within Pf6N2E2_604 at 678.855 kb on - strand, within Pf6N2E2_604 at 678.866 kb on + strand, within Pf6N2E2_604 at 678.884 kb on - strand, within Pf6N2E2_604 at 678.884 kb on - strand, within Pf6N2E2_604 at 678.884 kb on - strand at 678.940 kb on + strand, within Pf6N2E2_604 at 678.941 kb on - strand, within Pf6N2E2_604 at 678.941 kb on - strand, within Pf6N2E2_604 at 679.028 kb on + strand, within Pf6N2E2_604 at 679.028 kb on + strand, within Pf6N2E2_604 at 679.172 kb on + strand, within Pf6N2E2_604 at 679.172 kb on + strand, within Pf6N2E2_604 at 679.259 kb on + strand, within Pf6N2E2_604 at 679.260 kb on - strand, within Pf6N2E2_604 at 679.352 kb on + strand, within Pf6N2E2_604 at 679.352 kb on + strand, within Pf6N2E2_604 at 679.353 kb on - strand, within Pf6N2E2_604 at 679.465 kb on + strand, within Pf6N2E2_604 at 679.493 kb on + strand, within Pf6N2E2_604 at 679.494 kb on - strand, within Pf6N2E2_604 at 679.781 kb on + strand, within Pf6N2E2_604 at 680.159 kb on + strand, within Pf6N2E2_604 at 680.159 kb on + strand, within Pf6N2E2_604 at 680.159 kb on + strand, within Pf6N2E2_604 at 680.160 kb on - strand, within Pf6N2E2_604 at 680.160 kb on - strand, within Pf6N2E2_604 at 680.160 kb on - strand, within Pf6N2E2_604 at 680.771 kb on + strand at 680.772 kb on - strand at 680.949 kb on + strand at 680.949 kb on + strand at 680.964 kb on + strand at 680.964 kb on + strand at 680.964 kb on + strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.988 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.037 kb on - strand at 681.054 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.075 kb on - strand at 681.075 kb on - strand at 681.075 kb on - strand at 681.110 kb on - strand at 681.136 kb on + strand at 681.137 kb on - strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.145 kb on + strand at 681.145 kb on + strand at 681.146 kb on - strand at 681.146 kb on - strand at 681.161 kb on + strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.310 kb on - strand, within Pf6N2E2_605 at 681.409 kb on - strand, within Pf6N2E2_605
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 677,199 - Pf6N2E2_602 0.70 +0.8 677,199 - Pf6N2E2_602 0.70 -1.3 677,338 + +2.2 677,339 - -1.4 677,408 - Pf6N2E2_603 0.16 +0.0 677,606 - Pf6N2E2_603 0.40 +0.4 677,606 - Pf6N2E2_603 0.40 -0.3 677,606 - Pf6N2E2_603 0.40 -0.6 677,606 - Pf6N2E2_603 0.40 +1.0 678,031 + -0.4 678,032 - +0.9 678,061 - -0.1 678,067 - -2.1 678,070 + -1.4 678,070 + -0.8 678,070 + -1.5 678,071 - -0.8 678,071 - -1.4 678,071 - -2.2 678,080 - -1.9 678,100 + -1.3 678,101 - +0.0 678,101 - -0.1 678,101 - -0.2 678,101 - -0.1 678,143 + +1.2 678,155 + -0.7 678,170 + +0.8 678,171 - -2.1 678,353 + -0.8 678,354 - +0.9 678,462 - Pf6N2E2_604 0.13 -1.1 678,462 - Pf6N2E2_604 0.13 -2.0 678,521 + Pf6N2E2_604 0.15 -1.3 678,521 + Pf6N2E2_604 0.15 -0.3 678,522 - Pf6N2E2_604 0.15 -0.4 678,525 - Pf6N2E2_604 0.15 -1.5 678,525 - Pf6N2E2_604 0.15 -0.0 678,686 + Pf6N2E2_604 0.21 -2.6 678,686 + Pf6N2E2_604 0.21 -0.4 678,687 - Pf6N2E2_604 0.21 -0.7 678,687 - Pf6N2E2_604 0.21 +0.5 678,773 + Pf6N2E2_604 0.25 +0.3 678,773 + Pf6N2E2_604 0.25 +0.6 678,773 + Pf6N2E2_604 0.25 -0.7 678,774 - Pf6N2E2_604 0.25 -1.6 678,774 - Pf6N2E2_604 0.25 -0.3 678,852 + Pf6N2E2_604 0.28 +1.0 678,853 - Pf6N2E2_604 0.28 +1.4 678,854 + Pf6N2E2_604 0.28 -2.3 678,855 - Pf6N2E2_604 0.28 +0.2 678,855 - Pf6N2E2_604 0.28 -1.4 678,866 + Pf6N2E2_604 0.28 +0.7 678,884 - Pf6N2E2_604 0.29 +0.0 678,884 - Pf6N2E2_604 0.29 -0.0 678,884 - +0.9 678,940 + Pf6N2E2_604 0.31 -0.8 678,941 - Pf6N2E2_604 0.31 -0.3 678,941 - Pf6N2E2_604 0.31 +0.8 679,028 + Pf6N2E2_604 0.34 +0.4 679,028 + Pf6N2E2_604 0.34 -1.3 679,172 + Pf6N2E2_604 0.40 -0.6 679,172 + Pf6N2E2_604 0.40 -0.5 679,259 + Pf6N2E2_604 0.43 -0.9 679,260 - Pf6N2E2_604 0.43 +0.5 679,352 + Pf6N2E2_604 0.47 -0.6 679,352 + Pf6N2E2_604 0.47 -0.3 679,353 - Pf6N2E2_604 0.47 +0.1 679,465 + Pf6N2E2_604 0.51 -0.3 679,493 + Pf6N2E2_604 0.52 -0.8 679,494 - Pf6N2E2_604 0.52 -0.4 679,781 + Pf6N2E2_604 0.63 -0.3 680,159 + Pf6N2E2_604 0.77 +0.4 680,159 + Pf6N2E2_604 0.77 -0.8 680,159 + Pf6N2E2_604 0.77 -0.8 680,160 - Pf6N2E2_604 0.77 -0.1 680,160 - Pf6N2E2_604 0.77 -1.2 680,160 - Pf6N2E2_604 0.77 +0.3 680,771 + +0.2 680,772 - -2.3 680,949 + -1.4 680,949 + +0.4 680,964 + -0.7 680,964 + +1.0 680,964 + +0.6 680,965 - +1.2 680,965 - +1.0 680,965 - +1.1 680,965 - +0.4 680,965 - -0.9 680,988 + +0.3 681,031 + +0.4 681,031 + -0.2 681,031 + -0.5 681,031 + +0.8 681,037 - +0.1 681,054 + +0.4 681,074 + +1.0 681,074 + +0.4 681,074 + +0.1 681,074 + -1.1 681,075 - +1.3 681,075 - -0.1 681,075 - -0.4 681,110 - -0.2 681,136 + -0.2 681,137 - -2.0 681,142 + +1.3 681,142 + -0.2 681,142 + -0.4 681,142 + +0.4 681,143 - +0.1 681,143 - +0.7 681,143 - +1.4 681,143 - -2.3 681,143 - +0.4 681,145 + -0.4 681,145 + +1.0 681,146 - -1.3 681,146 - -0.2 681,161 + +0.3 681,162 - -0.1 681,162 - -1.3 681,162 - +0.5 681,162 - +0.0 681,310 - Pf6N2E2_605 0.13 +1.5 681,409 - Pf6N2E2_605 0.22 +1.4
Or see this region's nucleotide sequence