Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5302 and Pf6N2E2_5303 overlap by 4 nucleotides Pf6N2E2_5303 and Pf6N2E2_5304 are separated by 506 nucleotides Pf6N2E2_5304 and Pf6N2E2_5305 are separated by 81 nucleotides
Pf6N2E2_5302 - FIG00954263: hypothetical protein, at 6,096,445 to 6,096,945
_5302
Pf6N2E2_5303 - FIG00954638: hypothetical protein, at 6,096,942 to 6,097,259
_5303
Pf6N2E2_5304 - ribosomal subunit interface protein, putative, at 6,097,766 to 6,098,176
_5304
Pf6N2E2_5305 - Fe(3+) dicitrate transport protein FecA (from data) , at 6,098,258 to 6,100,597
_5305
Position (kb)
6097
6098
6099 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.845 kb on - strand, within Pf6N2E2_5302 at 6096.943 kb on + strand at 6096.943 kb on + strand at 6097.213 kb on + strand, within Pf6N2E2_5303 at 6097.419 kb on + strand at 6097.420 kb on - strand at 6097.420 kb on - strand at 6097.429 kb on + strand at 6097.429 kb on + strand at 6097.429 kb on + strand at 6097.429 kb on + strand at 6097.430 kb on - strand at 6097.430 kb on - strand at 6097.430 kb on - strand at 6097.529 kb on + strand at 6097.573 kb on - strand at 6097.637 kb on + strand at 6097.638 kb on - strand at 6097.651 kb on + strand at 6097.651 kb on + strand at 6097.651 kb on + strand at 6097.651 kb on + strand at 6097.651 kb on + strand at 6097.652 kb on - strand at 6097.700 kb on + strand at 6097.744 kb on + strand at 6097.745 kb on - strand at 6097.753 kb on + strand at 6097.765 kb on + strand at 6097.765 kb on + strand at 6097.765 kb on + strand at 6097.766 kb on - strand at 6097.766 kb on - strand at 6097.795 kb on + strand at 6097.796 kb on - strand at 6097.796 kb on - strand at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.834 kb on + strand, within Pf6N2E2_5304 at 6097.834 kb on + strand, within Pf6N2E2_5304 at 6097.835 kb on - strand, within Pf6N2E2_5304 at 6097.835 kb on - strand, within Pf6N2E2_5304 at 6097.835 kb on - strand, within Pf6N2E2_5304 at 6098.283 kb on + strand at 6098.283 kb on + strand at 6098.283 kb on + strand at 6098.283 kb on + strand at 6098.283 kb on + strand at 6098.284 kb on - strand at 6098.284 kb on - strand at 6098.284 kb on - strand at 6098.284 kb on - strand at 6098.284 kb on - strand at 6098.284 kb on - strand at 6098.284 kb on - strand at 6098.284 kb on - strand at 6098.307 kb on + strand at 6098.307 kb on + strand at 6098.307 kb on + strand at 6098.308 kb on - strand at 6098.308 kb on - strand at 6098.308 kb on - strand at 6098.308 kb on - strand at 6098.308 kb on - strand at 6098.308 kb on - strand at 6098.346 kb on + strand at 6098.346 kb on + strand at 6098.346 kb on + strand at 6098.346 kb on + strand at 6098.346 kb on + strand at 6098.347 kb on - strand at 6098.347 kb on - strand at 6098.347 kb on - strand at 6098.442 kb on + strand at 6098.462 kb on - strand at 6098.521 kb on - strand, within Pf6N2E2_5305 at 6098.521 kb on - strand, within Pf6N2E2_5305 at 6098.521 kb on - strand, within Pf6N2E2_5305 at 6098.521 kb on - strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.557 kb on + strand, within Pf6N2E2_5305 at 6098.558 kb on - strand, within Pf6N2E2_5305 at 6098.558 kb on - strand, within Pf6N2E2_5305 at 6098.558 kb on - strand, within Pf6N2E2_5305 at 6098.558 kb on - strand, within Pf6N2E2_5305 at 6098.558 kb on - strand, within Pf6N2E2_5305 at 6098.559 kb on + strand, within Pf6N2E2_5305 at 6098.560 kb on - strand, within Pf6N2E2_5305 at 6098.655 kb on + strand, within Pf6N2E2_5305 at 6098.655 kb on + strand, within Pf6N2E2_5305 at 6098.655 kb on + strand, within Pf6N2E2_5305 at 6098.655 kb on + strand, within Pf6N2E2_5305 at 6098.655 kb on + strand, within Pf6N2E2_5305 at 6098.655 kb on + strand, within Pf6N2E2_5305 at 6098.656 kb on - strand, within Pf6N2E2_5305 at 6098.656 kb on - strand, within Pf6N2E2_5305 at 6098.656 kb on - strand, within Pf6N2E2_5305 at 6098.656 kb on - strand, within Pf6N2E2_5305 at 6098.656 kb on - strand, within Pf6N2E2_5305 at 6098.656 kb on - strand, within Pf6N2E2_5305 at 6098.656 kb on - strand, within Pf6N2E2_5305 at 6098.656 kb on - strand, within Pf6N2E2_5305 at 6098.664 kb on + strand, within Pf6N2E2_5305 at 6098.664 kb on + strand, within Pf6N2E2_5305 at 6098.664 kb on + strand, within Pf6N2E2_5305 at 6098.664 kb on + strand, within Pf6N2E2_5305 at 6098.664 kb on + strand, within Pf6N2E2_5305 at 6098.664 kb on + strand, within Pf6N2E2_5305 at 6098.664 kb on + strand, within Pf6N2E2_5305 at 6098.664 kb on + strand, within Pf6N2E2_5305 at 6098.665 kb on - strand, within Pf6N2E2_5305 at 6098.709 kb on + strand, within Pf6N2E2_5305 at 6098.709 kb on + strand, within Pf6N2E2_5305 at 6098.710 kb on - strand, within Pf6N2E2_5305 at 6098.710 kb on - strand, within Pf6N2E2_5305 at 6098.710 kb on - strand, within Pf6N2E2_5305 at 6098.710 kb on - strand, within Pf6N2E2_5305 at 6098.710 kb on - strand, within Pf6N2E2_5305 at 6098.787 kb on + strand, within Pf6N2E2_5305 at 6098.788 kb on - strand, within Pf6N2E2_5305 at 6098.788 kb on - strand, within Pf6N2E2_5305 at 6098.925 kb on + strand, within Pf6N2E2_5305 at 6098.962 kb on - strand, within Pf6N2E2_5305 at 6098.962 kb on - strand, within Pf6N2E2_5305 at 6098.989 kb on - strand, within Pf6N2E2_5305 at 6098.989 kb on - strand, within Pf6N2E2_5305 at 6099.021 kb on + strand, within Pf6N2E2_5305 at 6099.021 kb on + strand, within Pf6N2E2_5305 at 6099.021 kb on + strand, within Pf6N2E2_5305 at 6099.021 kb on + strand, within Pf6N2E2_5305 at 6099.021 kb on + strand, within Pf6N2E2_5305 at 6099.022 kb on - strand, within Pf6N2E2_5305 at 6099.022 kb on - strand, within Pf6N2E2_5305 at 6099.022 kb on - strand, within Pf6N2E2_5305 at 6099.033 kb on + strand, within Pf6N2E2_5305 at 6099.033 kb on + strand, within Pf6N2E2_5305 at 6099.034 kb on - strand, within Pf6N2E2_5305 at 6099.034 kb on - strand, within Pf6N2E2_5305 at 6099.034 kb on - strand, within Pf6N2E2_5305
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 6,096,793 + Pf6N2E2_5302 0.69 +0.9 6,096,793 + Pf6N2E2_5302 0.69 +0.1 6,096,793 + Pf6N2E2_5302 0.69 +0.1 6,096,793 + Pf6N2E2_5302 0.69 +0.4 6,096,793 + Pf6N2E2_5302 0.69 +1.7 6,096,794 - Pf6N2E2_5302 0.70 +0.9 6,096,794 - Pf6N2E2_5302 0.70 -0.7 6,096,794 - Pf6N2E2_5302 0.70 -0.2 6,096,794 - Pf6N2E2_5302 0.70 +1.0 6,096,794 - Pf6N2E2_5302 0.70 +0.9 6,096,794 - Pf6N2E2_5302 0.70 +0.9 6,096,794 - Pf6N2E2_5302 0.70 +1.3 6,096,794 - Pf6N2E2_5302 0.70 +1.0 6,096,794 - Pf6N2E2_5302 0.70 +0.2 6,096,845 - Pf6N2E2_5302 0.80 +1.1 6,096,943 + -0.2 6,096,943 + +0.6 6,097,213 + Pf6N2E2_5303 0.85 +0.7 6,097,419 + +0.2 6,097,420 - -0.8 6,097,420 - +0.4 6,097,429 + +0.7 6,097,429 + +0.3 6,097,429 + +0.6 6,097,429 + +2.0 6,097,430 - -0.5 6,097,430 - +0.1 6,097,430 - +2.3 6,097,529 + +1.6 6,097,573 - +1.3 6,097,637 + +1.1 6,097,638 - +1.4 6,097,651 + +0.9 6,097,651 + +1.0 6,097,651 + +1.9 6,097,651 + -0.2 6,097,651 + +1.5 6,097,652 - +0.5 6,097,700 + +0.9 6,097,744 + +1.3 6,097,745 - +1.8 6,097,753 + +1.7 6,097,765 + +1.1 6,097,765 + +2.6 6,097,765 + +0.4 6,097,766 - +2.0 6,097,766 - +1.7 6,097,795 + +1.7 6,097,796 - +1.0 6,097,796 - +2.3 6,097,831 + Pf6N2E2_5304 0.16 +1.6 6,097,831 + Pf6N2E2_5304 0.16 +2.4 6,097,831 + Pf6N2E2_5304 0.16 +2.0 6,097,831 + Pf6N2E2_5304 0.16 +1.8 6,097,831 + Pf6N2E2_5304 0.16 +0.9 6,097,831 + Pf6N2E2_5304 0.16 +1.0 6,097,831 + Pf6N2E2_5304 0.16 +2.8 6,097,831 + Pf6N2E2_5304 0.16 +0.7 6,097,831 + Pf6N2E2_5304 0.16 +1.8 6,097,832 - Pf6N2E2_5304 0.16 +1.6 6,097,832 - Pf6N2E2_5304 0.16 +1.3 6,097,832 - Pf6N2E2_5304 0.16 +2.2 6,097,832 - Pf6N2E2_5304 0.16 +1.1 6,097,832 - Pf6N2E2_5304 0.16 +1.9 6,097,832 - Pf6N2E2_5304 0.16 +2.5 6,097,832 - Pf6N2E2_5304 0.16 +1.3 6,097,832 - Pf6N2E2_5304 0.16 +1.7 6,097,832 - Pf6N2E2_5304 0.16 +1.8 6,097,832 - Pf6N2E2_5304 0.16 +2.0 6,097,834 + Pf6N2E2_5304 0.17 +1.5 6,097,834 + Pf6N2E2_5304 0.17 +2.0 6,097,835 - Pf6N2E2_5304 0.17 +1.0 6,097,835 - Pf6N2E2_5304 0.17 +1.3 6,097,835 - Pf6N2E2_5304 0.17 +2.0 6,098,283 + -1.3 6,098,283 + +1.8 6,098,283 + -1.3 6,098,283 + +0.1 6,098,283 + -1.3 6,098,284 - -0.4 6,098,284 - -0.6 6,098,284 - +0.7 6,098,284 - +2.1 6,098,284 - -0.0 6,098,284 - -0.5 6,098,284 - +1.0 6,098,284 - +0.5 6,098,307 + +0.1 6,098,307 + +1.3 6,098,307 + -0.3 6,098,308 - +0.8 6,098,308 - +1.1 6,098,308 - +0.4 6,098,308 - +0.7 6,098,308 - +1.0 6,098,308 - +0.9 6,098,346 + +0.3 6,098,346 + +0.7 6,098,346 + +1.0 6,098,346 + +1.4 6,098,346 + -0.2 6,098,347 - +1.4 6,098,347 - +0.0 6,098,347 - +2.0 6,098,442 + +0.8 6,098,462 - +1.3 6,098,521 - Pf6N2E2_5305 0.11 -0.7 6,098,521 - Pf6N2E2_5305 0.11 +0.7 6,098,521 - Pf6N2E2_5305 0.11 +0.4 6,098,521 - Pf6N2E2_5305 0.11 -0.1 6,098,557 + Pf6N2E2_5305 0.13 +0.3 6,098,557 + Pf6N2E2_5305 0.13 -0.8 6,098,557 + Pf6N2E2_5305 0.13 -0.0 6,098,557 + Pf6N2E2_5305 0.13 +0.3 6,098,557 + Pf6N2E2_5305 0.13 +0.3 6,098,557 + Pf6N2E2_5305 0.13 -2.3 6,098,557 + Pf6N2E2_5305 0.13 +1.6 6,098,557 + Pf6N2E2_5305 0.13 -0.4 6,098,557 + Pf6N2E2_5305 0.13 -0.6 6,098,557 + Pf6N2E2_5305 0.13 +0.6 6,098,558 - Pf6N2E2_5305 0.13 -0.2 6,098,558 - Pf6N2E2_5305 0.13 +0.9 6,098,558 - Pf6N2E2_5305 0.13 +1.2 6,098,558 - Pf6N2E2_5305 0.13 +1.1 6,098,558 - Pf6N2E2_5305 0.13 +1.5 6,098,559 + Pf6N2E2_5305 0.13 +1.4 6,098,560 - Pf6N2E2_5305 0.13 +0.7 6,098,655 + Pf6N2E2_5305 0.17 +0.3 6,098,655 + Pf6N2E2_5305 0.17 +0.1 6,098,655 + Pf6N2E2_5305 0.17 +0.1 6,098,655 + Pf6N2E2_5305 0.17 -0.2 6,098,655 + Pf6N2E2_5305 0.17 +1.2 6,098,655 + Pf6N2E2_5305 0.17 +0.7 6,098,656 - Pf6N2E2_5305 0.17 -0.1 6,098,656 - Pf6N2E2_5305 0.17 -0.4 6,098,656 - Pf6N2E2_5305 0.17 +1.1 6,098,656 - Pf6N2E2_5305 0.17 +0.1 6,098,656 - Pf6N2E2_5305 0.17 -1.5 6,098,656 - Pf6N2E2_5305 0.17 -1.5 6,098,656 - Pf6N2E2_5305 0.17 +1.1 6,098,656 - Pf6N2E2_5305 0.17 +1.2 6,098,664 + Pf6N2E2_5305 0.17 +0.8 6,098,664 + Pf6N2E2_5305 0.17 +0.8 6,098,664 + Pf6N2E2_5305 0.17 +0.2 6,098,664 + Pf6N2E2_5305 0.17 -0.8 6,098,664 + Pf6N2E2_5305 0.17 +0.6 6,098,664 + Pf6N2E2_5305 0.17 +0.6 6,098,664 + Pf6N2E2_5305 0.17 +0.4 6,098,664 + Pf6N2E2_5305 0.17 +0.9 6,098,665 - Pf6N2E2_5305 0.17 -0.3 6,098,709 + Pf6N2E2_5305 0.19 -0.6 6,098,709 + Pf6N2E2_5305 0.19 +0.4 6,098,710 - Pf6N2E2_5305 0.19 +0.6 6,098,710 - Pf6N2E2_5305 0.19 -0.3 6,098,710 - Pf6N2E2_5305 0.19 +0.7 6,098,710 - Pf6N2E2_5305 0.19 +0.3 6,098,710 - Pf6N2E2_5305 0.19 +1.3 6,098,787 + Pf6N2E2_5305 0.23 +0.4 6,098,788 - Pf6N2E2_5305 0.23 -0.0 6,098,788 - Pf6N2E2_5305 0.23 -0.4 6,098,925 + Pf6N2E2_5305 0.29 +0.4 6,098,962 - Pf6N2E2_5305 0.30 +1.4 6,098,962 - Pf6N2E2_5305 0.30 +0.0 6,098,989 - Pf6N2E2_5305 0.31 +0.7 6,098,989 - Pf6N2E2_5305 0.31 -0.4 6,099,021 + Pf6N2E2_5305 0.33 +1.0 6,099,021 + Pf6N2E2_5305 0.33 -0.3 6,099,021 + Pf6N2E2_5305 0.33 +0.9 6,099,021 + Pf6N2E2_5305 0.33 -0.8 6,099,021 + Pf6N2E2_5305 0.33 +0.4 6,099,022 - Pf6N2E2_5305 0.33 +0.9 6,099,022 - Pf6N2E2_5305 0.33 +0.9 6,099,022 - Pf6N2E2_5305 0.33 +1.4 6,099,033 + Pf6N2E2_5305 0.33 +0.3 6,099,033 + Pf6N2E2_5305 0.33 +2.0 6,099,034 - Pf6N2E2_5305 0.33 +0.8 6,099,034 - Pf6N2E2_5305 0.33 +0.1 6,099,034 - Pf6N2E2_5305 0.33 +0.8
Or see this region's nucleotide sequence