Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5304

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5302 and Pf6N2E2_5303 overlap by 4 nucleotidesPf6N2E2_5303 and Pf6N2E2_5304 are separated by 506 nucleotidesPf6N2E2_5304 and Pf6N2E2_5305 are separated by 81 nucleotides Pf6N2E2_5302 - FIG00954263: hypothetical protein, at 6,096,445 to 6,096,945 _5302 Pf6N2E2_5303 - FIG00954638: hypothetical protein, at 6,096,942 to 6,097,259 _5303 Pf6N2E2_5304 - ribosomal subunit interface protein, putative, at 6,097,766 to 6,098,176 _5304 Pf6N2E2_5305 - Fe(3+) dicitrate transport protein FecA (from data), at 6,098,258 to 6,100,597 _5305 Position (kb) 6097 6098 6099Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6096.793 kb on + strand, within Pf6N2E2_5302at 6096.793 kb on + strand, within Pf6N2E2_5302at 6096.793 kb on + strand, within Pf6N2E2_5302at 6096.793 kb on + strand, within Pf6N2E2_5302at 6096.793 kb on + strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.794 kb on - strand, within Pf6N2E2_5302at 6096.845 kb on - strand, within Pf6N2E2_5302at 6096.943 kb on + strandat 6096.943 kb on + strandat 6097.213 kb on + strand, within Pf6N2E2_5303at 6097.419 kb on + strandat 6097.420 kb on - strandat 6097.420 kb on - strandat 6097.429 kb on + strandat 6097.429 kb on + strandat 6097.429 kb on + strandat 6097.429 kb on + strandat 6097.430 kb on - strandat 6097.430 kb on - strandat 6097.430 kb on - strandat 6097.529 kb on + strandat 6097.573 kb on - strandat 6097.637 kb on + strandat 6097.638 kb on - strandat 6097.651 kb on + strandat 6097.651 kb on + strandat 6097.651 kb on + strandat 6097.651 kb on + strandat 6097.651 kb on + strandat 6097.652 kb on - strandat 6097.700 kb on + strandat 6097.744 kb on + strandat 6097.745 kb on - strandat 6097.753 kb on + strandat 6097.765 kb on + strandat 6097.765 kb on + strandat 6097.765 kb on + strandat 6097.766 kb on - strandat 6097.766 kb on - strandat 6097.795 kb on + strandat 6097.796 kb on - strandat 6097.796 kb on - strandat 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.831 kb on + strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.832 kb on - strand, within Pf6N2E2_5304at 6097.834 kb on + strand, within Pf6N2E2_5304at 6097.834 kb on + strand, within Pf6N2E2_5304at 6097.835 kb on - strand, within Pf6N2E2_5304at 6097.835 kb on - strand, within Pf6N2E2_5304at 6097.835 kb on - strand, within Pf6N2E2_5304at 6098.283 kb on + strandat 6098.283 kb on + strandat 6098.283 kb on + strandat 6098.283 kb on + strandat 6098.283 kb on + strandat 6098.284 kb on - strandat 6098.284 kb on - strandat 6098.284 kb on - strandat 6098.284 kb on - strandat 6098.284 kb on - strandat 6098.284 kb on - strandat 6098.284 kb on - strandat 6098.284 kb on - strandat 6098.307 kb on + strandat 6098.307 kb on + strandat 6098.307 kb on + strandat 6098.308 kb on - strandat 6098.308 kb on - strandat 6098.308 kb on - strandat 6098.308 kb on - strandat 6098.308 kb on - strandat 6098.308 kb on - strandat 6098.346 kb on + strandat 6098.346 kb on + strandat 6098.346 kb on + strandat 6098.346 kb on + strandat 6098.346 kb on + strandat 6098.347 kb on - strandat 6098.347 kb on - strandat 6098.347 kb on - strandat 6098.442 kb on + strandat 6098.462 kb on - strandat 6098.521 kb on - strand, within Pf6N2E2_5305at 6098.521 kb on - strand, within Pf6N2E2_5305at 6098.521 kb on - strand, within Pf6N2E2_5305at 6098.521 kb on - strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.557 kb on + strand, within Pf6N2E2_5305at 6098.558 kb on - strand, within Pf6N2E2_5305at 6098.558 kb on - strand, within Pf6N2E2_5305at 6098.558 kb on - strand, within Pf6N2E2_5305at 6098.558 kb on - strand, within Pf6N2E2_5305at 6098.558 kb on - strand, within Pf6N2E2_5305at 6098.559 kb on + strand, within Pf6N2E2_5305at 6098.560 kb on - strand, within Pf6N2E2_5305at 6098.655 kb on + strand, within Pf6N2E2_5305at 6098.655 kb on + strand, within Pf6N2E2_5305at 6098.655 kb on + strand, within Pf6N2E2_5305at 6098.655 kb on + strand, within Pf6N2E2_5305at 6098.655 kb on + strand, within Pf6N2E2_5305at 6098.655 kb on + strand, within Pf6N2E2_5305at 6098.656 kb on - strand, within Pf6N2E2_5305at 6098.656 kb on - strand, within Pf6N2E2_5305at 6098.656 kb on - strand, within Pf6N2E2_5305at 6098.656 kb on - strand, within Pf6N2E2_5305at 6098.656 kb on - strand, within Pf6N2E2_5305at 6098.656 kb on - strand, within Pf6N2E2_5305at 6098.656 kb on - strand, within Pf6N2E2_5305at 6098.656 kb on - strand, within Pf6N2E2_5305at 6098.664 kb on + strand, within Pf6N2E2_5305at 6098.664 kb on + strand, within Pf6N2E2_5305at 6098.664 kb on + strand, within Pf6N2E2_5305at 6098.664 kb on + strand, within Pf6N2E2_5305at 6098.664 kb on + strand, within Pf6N2E2_5305at 6098.664 kb on + strand, within Pf6N2E2_5305at 6098.664 kb on + strand, within Pf6N2E2_5305at 6098.664 kb on + strand, within Pf6N2E2_5305at 6098.665 kb on - strand, within Pf6N2E2_5305at 6098.709 kb on + strand, within Pf6N2E2_5305at 6098.709 kb on + strand, within Pf6N2E2_5305at 6098.710 kb on - strand, within Pf6N2E2_5305at 6098.710 kb on - strand, within Pf6N2E2_5305at 6098.710 kb on - strand, within Pf6N2E2_5305at 6098.710 kb on - strand, within Pf6N2E2_5305at 6098.710 kb on - strand, within Pf6N2E2_5305at 6098.787 kb on + strand, within Pf6N2E2_5305at 6098.788 kb on - strand, within Pf6N2E2_5305at 6098.788 kb on - strand, within Pf6N2E2_5305at 6098.925 kb on + strand, within Pf6N2E2_5305at 6098.962 kb on - strand, within Pf6N2E2_5305at 6098.962 kb on - strand, within Pf6N2E2_5305at 6098.989 kb on - strand, within Pf6N2E2_5305at 6098.989 kb on - strand, within Pf6N2E2_5305at 6099.021 kb on + strand, within Pf6N2E2_5305at 6099.021 kb on + strand, within Pf6N2E2_5305at 6099.021 kb on + strand, within Pf6N2E2_5305at 6099.021 kb on + strand, within Pf6N2E2_5305at 6099.021 kb on + strand, within Pf6N2E2_5305at 6099.022 kb on - strand, within Pf6N2E2_5305at 6099.022 kb on - strand, within Pf6N2E2_5305at 6099.022 kb on - strand, within Pf6N2E2_5305at 6099.033 kb on + strand, within Pf6N2E2_5305at 6099.033 kb on + strand, within Pf6N2E2_5305at 6099.034 kb on - strand, within Pf6N2E2_5305at 6099.034 kb on - strand, within Pf6N2E2_5305at 6099.034 kb on - strand, within Pf6N2E2_5305

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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6,096,793 + Pf6N2E2_5302 0.69 +0.9
6,096,793 + Pf6N2E2_5302 0.69 +0.1
6,096,793 + Pf6N2E2_5302 0.69 +0.1
6,096,793 + Pf6N2E2_5302 0.69 +0.4
6,096,793 + Pf6N2E2_5302 0.69 +1.7
6,096,794 - Pf6N2E2_5302 0.70 +0.9
6,096,794 - Pf6N2E2_5302 0.70 -0.7
6,096,794 - Pf6N2E2_5302 0.70 -0.2
6,096,794 - Pf6N2E2_5302 0.70 +1.0
6,096,794 - Pf6N2E2_5302 0.70 +0.9
6,096,794 - Pf6N2E2_5302 0.70 +0.9
6,096,794 - Pf6N2E2_5302 0.70 +1.3
6,096,794 - Pf6N2E2_5302 0.70 +1.0
6,096,794 - Pf6N2E2_5302 0.70 +0.2
6,096,845 - Pf6N2E2_5302 0.80 +1.1
6,096,943 + -0.2
6,096,943 + +0.6
6,097,213 + Pf6N2E2_5303 0.85 +0.7
6,097,419 + +0.2
6,097,420 - -0.8
6,097,420 - +0.4
6,097,429 + +0.7
6,097,429 + +0.3
6,097,429 + +0.6
6,097,429 + +2.0
6,097,430 - -0.5
6,097,430 - +0.1
6,097,430 - +2.3
6,097,529 + +1.6
6,097,573 - +1.3
6,097,637 + +1.1
6,097,638 - +1.4
6,097,651 + +0.9
6,097,651 + +1.0
6,097,651 + +1.9
6,097,651 + -0.2
6,097,651 + +1.5
6,097,652 - +0.5
6,097,700 + +0.9
6,097,744 + +1.3
6,097,745 - +1.8
6,097,753 + +1.7
6,097,765 + +1.1
6,097,765 + +2.6
6,097,765 + +0.4
6,097,766 - +2.0
6,097,766 - +1.7
6,097,795 + +1.7
6,097,796 - +1.0
6,097,796 - +2.3
6,097,831 + Pf6N2E2_5304 0.16 +1.6
6,097,831 + Pf6N2E2_5304 0.16 +2.4
6,097,831 + Pf6N2E2_5304 0.16 +2.0
6,097,831 + Pf6N2E2_5304 0.16 +1.8
6,097,831 + Pf6N2E2_5304 0.16 +0.9
6,097,831 + Pf6N2E2_5304 0.16 +1.0
6,097,831 + Pf6N2E2_5304 0.16 +2.8
6,097,831 + Pf6N2E2_5304 0.16 +0.7
6,097,831 + Pf6N2E2_5304 0.16 +1.8
6,097,832 - Pf6N2E2_5304 0.16 +1.6
6,097,832 - Pf6N2E2_5304 0.16 +1.3
6,097,832 - Pf6N2E2_5304 0.16 +2.2
6,097,832 - Pf6N2E2_5304 0.16 +1.1
6,097,832 - Pf6N2E2_5304 0.16 +1.9
6,097,832 - Pf6N2E2_5304 0.16 +2.5
6,097,832 - Pf6N2E2_5304 0.16 +1.3
6,097,832 - Pf6N2E2_5304 0.16 +1.7
6,097,832 - Pf6N2E2_5304 0.16 +1.8
6,097,832 - Pf6N2E2_5304 0.16 +2.0
6,097,834 + Pf6N2E2_5304 0.17 +1.5
6,097,834 + Pf6N2E2_5304 0.17 +2.0
6,097,835 - Pf6N2E2_5304 0.17 +1.0
6,097,835 - Pf6N2E2_5304 0.17 +1.3
6,097,835 - Pf6N2E2_5304 0.17 +2.0
6,098,283 + -1.3
6,098,283 + +1.8
6,098,283 + -1.3
6,098,283 + +0.1
6,098,283 + -1.3
6,098,284 - -0.4
6,098,284 - -0.6
6,098,284 - +0.7
6,098,284 - +2.1
6,098,284 - -0.0
6,098,284 - -0.5
6,098,284 - +1.0
6,098,284 - +0.5
6,098,307 + +0.1
6,098,307 + +1.3
6,098,307 + -0.3
6,098,308 - +0.8
6,098,308 - +1.1
6,098,308 - +0.4
6,098,308 - +0.7
6,098,308 - +1.0
6,098,308 - +0.9
6,098,346 + +0.3
6,098,346 + +0.7
6,098,346 + +1.0
6,098,346 + +1.4
6,098,346 + -0.2
6,098,347 - +1.4
6,098,347 - +0.0
6,098,347 - +2.0
6,098,442 + +0.8
6,098,462 - +1.3
6,098,521 - Pf6N2E2_5305 0.11 -0.7
6,098,521 - Pf6N2E2_5305 0.11 +0.7
6,098,521 - Pf6N2E2_5305 0.11 +0.4
6,098,521 - Pf6N2E2_5305 0.11 -0.1
6,098,557 + Pf6N2E2_5305 0.13 +0.3
6,098,557 + Pf6N2E2_5305 0.13 -0.8
6,098,557 + Pf6N2E2_5305 0.13 -0.0
6,098,557 + Pf6N2E2_5305 0.13 +0.3
6,098,557 + Pf6N2E2_5305 0.13 +0.3
6,098,557 + Pf6N2E2_5305 0.13 -2.3
6,098,557 + Pf6N2E2_5305 0.13 +1.6
6,098,557 + Pf6N2E2_5305 0.13 -0.4
6,098,557 + Pf6N2E2_5305 0.13 -0.6
6,098,557 + Pf6N2E2_5305 0.13 +0.6
6,098,558 - Pf6N2E2_5305 0.13 -0.2
6,098,558 - Pf6N2E2_5305 0.13 +0.9
6,098,558 - Pf6N2E2_5305 0.13 +1.2
6,098,558 - Pf6N2E2_5305 0.13 +1.1
6,098,558 - Pf6N2E2_5305 0.13 +1.5
6,098,559 + Pf6N2E2_5305 0.13 +1.4
6,098,560 - Pf6N2E2_5305 0.13 +0.7
6,098,655 + Pf6N2E2_5305 0.17 +0.3
6,098,655 + Pf6N2E2_5305 0.17 +0.1
6,098,655 + Pf6N2E2_5305 0.17 +0.1
6,098,655 + Pf6N2E2_5305 0.17 -0.2
6,098,655 + Pf6N2E2_5305 0.17 +1.2
6,098,655 + Pf6N2E2_5305 0.17 +0.7
6,098,656 - Pf6N2E2_5305 0.17 -0.1
6,098,656 - Pf6N2E2_5305 0.17 -0.4
6,098,656 - Pf6N2E2_5305 0.17 +1.1
6,098,656 - Pf6N2E2_5305 0.17 +0.1
6,098,656 - Pf6N2E2_5305 0.17 -1.5
6,098,656 - Pf6N2E2_5305 0.17 -1.5
6,098,656 - Pf6N2E2_5305 0.17 +1.1
6,098,656 - Pf6N2E2_5305 0.17 +1.2
6,098,664 + Pf6N2E2_5305 0.17 +0.8
6,098,664 + Pf6N2E2_5305 0.17 +0.8
6,098,664 + Pf6N2E2_5305 0.17 +0.2
6,098,664 + Pf6N2E2_5305 0.17 -0.8
6,098,664 + Pf6N2E2_5305 0.17 +0.6
6,098,664 + Pf6N2E2_5305 0.17 +0.6
6,098,664 + Pf6N2E2_5305 0.17 +0.4
6,098,664 + Pf6N2E2_5305 0.17 +0.9
6,098,665 - Pf6N2E2_5305 0.17 -0.3
6,098,709 + Pf6N2E2_5305 0.19 -0.6
6,098,709 + Pf6N2E2_5305 0.19 +0.4
6,098,710 - Pf6N2E2_5305 0.19 +0.6
6,098,710 - Pf6N2E2_5305 0.19 -0.3
6,098,710 - Pf6N2E2_5305 0.19 +0.7
6,098,710 - Pf6N2E2_5305 0.19 +0.3
6,098,710 - Pf6N2E2_5305 0.19 +1.3
6,098,787 + Pf6N2E2_5305 0.23 +0.4
6,098,788 - Pf6N2E2_5305 0.23 -0.0
6,098,788 - Pf6N2E2_5305 0.23 -0.4
6,098,925 + Pf6N2E2_5305 0.29 +0.4
6,098,962 - Pf6N2E2_5305 0.30 +1.4
6,098,962 - Pf6N2E2_5305 0.30 +0.0
6,098,989 - Pf6N2E2_5305 0.31 +0.7
6,098,989 - Pf6N2E2_5305 0.31 -0.4
6,099,021 + Pf6N2E2_5305 0.33 +1.0
6,099,021 + Pf6N2E2_5305 0.33 -0.3
6,099,021 + Pf6N2E2_5305 0.33 +0.9
6,099,021 + Pf6N2E2_5305 0.33 -0.8
6,099,021 + Pf6N2E2_5305 0.33 +0.4
6,099,022 - Pf6N2E2_5305 0.33 +0.9
6,099,022 - Pf6N2E2_5305 0.33 +0.9
6,099,022 - Pf6N2E2_5305 0.33 +1.4
6,099,033 + Pf6N2E2_5305 0.33 +0.3
6,099,033 + Pf6N2E2_5305 0.33 +2.0
6,099,034 - Pf6N2E2_5305 0.33 +0.8
6,099,034 - Pf6N2E2_5305 0.33 +0.1
6,099,034 - Pf6N2E2_5305 0.33 +0.8

Or see this region's nucleotide sequence