Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4626 and Pf6N2E2_4627 are separated by 1 nucleotides Pf6N2E2_4627 and Pf6N2E2_4628 are separated by 114 nucleotides Pf6N2E2_4628 and Pf6N2E2_4629 are separated by 313 nucleotides Pf6N2E2_4629 and Pf6N2E2_4630 are separated by 40 nucleotides
Pf6N2E2_4626 - Malonate transporter, MadL subunit, at 5,355,213 to 5,355,629
_4626
Pf6N2E2_4627 - Malonate transporter, MadM subunit, at 5,355,631 to 5,356,395
_4627
Pf6N2E2_4628 - Malonate utilization transcriptional regulator, at 5,356,510 to 5,357,424
_4628
Pf6N2E2_4629 - COG1272: Predicted membrane protein hemolysin III homolog, at 5,357,738 to 5,358,355
_4629
Pf6N2E2_4630 - Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-), at 5,358,396 to 5,359,115
_4630
Position (kb) 5356
5357
5358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5355.616 kb on + strand at 5355.617 kb on - strand at 5355.617 kb on - strand at 5355.617 kb on - strand at 5355.617 kb on - strand at 5355.630 kb on + strand at 5355.630 kb on + strand at 5355.630 kb on + strand at 5355.631 kb on - strand at 5355.664 kb on - strand at 5355.664 kb on - strand at 5355.664 kb on - strand at 5355.739 kb on + strand, within Pf6N2E2_4627 at 5355.739 kb on + strand, within Pf6N2E2_4627 at 5355.739 kb on + strand, within Pf6N2E2_4627 at 5355.740 kb on - strand, within Pf6N2E2_4627 at 5355.740 kb on - strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.072 kb on + strand, within Pf6N2E2_4627 at 5356.073 kb on - strand, within Pf6N2E2_4627 at 5356.073 kb on - strand, within Pf6N2E2_4627 at 5356.073 kb on - strand, within Pf6N2E2_4627 at 5356.073 kb on - strand, within Pf6N2E2_4627 at 5356.073 kb on - strand, within Pf6N2E2_4627 at 5356.073 kb on - strand, within Pf6N2E2_4627 at 5356.073 kb on - strand, within Pf6N2E2_4627 at 5356.073 kb on - strand, within Pf6N2E2_4627 at 5356.210 kb on - strand, within Pf6N2E2_4627 at 5356.303 kb on + strand, within Pf6N2E2_4627 at 5356.367 kb on - strand at 5356.367 kb on - strand at 5356.367 kb on - strand at 5356.367 kb on - strand at 5356.394 kb on - strand at 5356.467 kb on + strand at 5356.467 kb on + strand at 5356.468 kb on - strand at 5356.468 kb on - strand at 5356.503 kb on + strand at 5356.503 kb on + strand at 5356.503 kb on + strand at 5356.504 kb on - strand at 5356.504 kb on - strand at 5356.529 kb on + strand at 5356.529 kb on + strand at 5356.529 kb on + strand at 5356.529 kb on + strand at 5356.529 kb on + strand at 5356.529 kb on + strand at 5356.530 kb on - strand at 5356.530 kb on - strand at 5356.530 kb on - strand at 5356.530 kb on - strand at 5356.612 kb on + strand, within Pf6N2E2_4628 at 5356.612 kb on + strand, within Pf6N2E2_4628 at 5356.612 kb on + strand, within Pf6N2E2_4628 at 5356.659 kb on - strand, within Pf6N2E2_4628 at 5357.006 kb on + strand, within Pf6N2E2_4628 at 5357.006 kb on + strand, within Pf6N2E2_4628 at 5357.006 kb on + strand, within Pf6N2E2_4628 at 5357.007 kb on - strand, within Pf6N2E2_4628 at 5357.111 kb on + strand, within Pf6N2E2_4628 at 5357.171 kb on - strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.223 kb on - strand, within Pf6N2E2_4628 at 5357.223 kb on - strand, within Pf6N2E2_4628 at 5357.437 kb on + strand at 5357.438 kb on - strand at 5357.438 kb on - strand at 5357.474 kb on + strand at 5357.474 kb on + strand at 5357.487 kb on + strand at 5357.487 kb on + strand at 5357.487 kb on + strand at 5357.487 kb on + strand at 5357.487 kb on + strand at 5357.488 kb on - strand at 5357.488 kb on - strand at 5357.488 kb on - strand at 5357.488 kb on - strand at 5357.518 kb on + strand at 5357.518 kb on + strand at 5357.518 kb on + strand at 5357.519 kb on - strand at 5357.519 kb on - strand at 5357.519 kb on - strand at 5357.653 kb on - strand at 5357.653 kb on - strand at 5357.741 kb on + strand at 5357.741 kb on + strand at 5357.742 kb on - strand at 5357.742 kb on - strand at 5357.742 kb on - strand at 5357.742 kb on - strand at 5357.797 kb on + strand at 5357.870 kb on + strand, within Pf6N2E2_4629 at 5357.894 kb on + strand, within Pf6N2E2_4629 at 5357.894 kb on + strand, within Pf6N2E2_4629 at 5357.894 kb on + strand, within Pf6N2E2_4629 at 5357.894 kb on + strand, within Pf6N2E2_4629 at 5357.972 kb on + strand, within Pf6N2E2_4629 at 5357.993 kb on + strand, within Pf6N2E2_4629 at 5357.993 kb on + strand, within Pf6N2E2_4629 at 5357.993 kb on + strand, within Pf6N2E2_4629 at 5357.994 kb on - strand, within Pf6N2E2_4629 at 5357.994 kb on - strand, within Pf6N2E2_4629 at 5358.131 kb on + strand, within Pf6N2E2_4629 at 5358.131 kb on + strand, within Pf6N2E2_4629 at 5358.132 kb on - strand, within Pf6N2E2_4629 at 5358.230 kb on + strand, within Pf6N2E2_4629 at 5358.231 kb on - strand, within Pf6N2E2_4629 at 5358.231 kb on - strand, within Pf6N2E2_4629 at 5358.244 kb on + strand, within Pf6N2E2_4629 at 5358.344 kb on + strand at 5358.344 kb on + strand at 5358.344 kb on + strand at 5358.345 kb on - strand at 5358.353 kb on + strand at 5358.397 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 5,355,616 + +1.1 5,355,617 - -0.2 5,355,617 - +0.1 5,355,617 - +0.5 5,355,617 - +1.2 5,355,630 + -0.4 5,355,630 + +0.3 5,355,630 + +0.9 5,355,631 - -2.3 5,355,664 - +0.7 5,355,664 - +1.8 5,355,664 - +0.0 5,355,739 + Pf6N2E2_4627 0.14 +0.1 5,355,739 + Pf6N2E2_4627 0.14 +1.0 5,355,739 + Pf6N2E2_4627 0.14 +0.5 5,355,740 - Pf6N2E2_4627 0.14 -0.9 5,355,740 - Pf6N2E2_4627 0.14 +0.5 5,356,072 + Pf6N2E2_4627 0.58 -0.9 5,356,072 + Pf6N2E2_4627 0.58 -0.1 5,356,072 + Pf6N2E2_4627 0.58 +0.3 5,356,072 + Pf6N2E2_4627 0.58 -0.6 5,356,072 + Pf6N2E2_4627 0.58 -0.4 5,356,072 + Pf6N2E2_4627 0.58 -1.2 5,356,072 + Pf6N2E2_4627 0.58 +0.4 5,356,072 + Pf6N2E2_4627 0.58 -0.8 5,356,072 + Pf6N2E2_4627 0.58 -0.6 5,356,073 - Pf6N2E2_4627 0.58 +0.6 5,356,073 - Pf6N2E2_4627 0.58 -1.4 5,356,073 - Pf6N2E2_4627 0.58 +0.2 5,356,073 - Pf6N2E2_4627 0.58 -0.0 5,356,073 - Pf6N2E2_4627 0.58 -0.7 5,356,073 - Pf6N2E2_4627 0.58 +0.0 5,356,073 - Pf6N2E2_4627 0.58 -0.8 5,356,073 - Pf6N2E2_4627 0.58 +0.6 5,356,210 - Pf6N2E2_4627 0.76 +0.6 5,356,303 + Pf6N2E2_4627 0.88 +0.1 5,356,367 - +0.2 5,356,367 - -2.5 5,356,367 - +1.9 5,356,367 - -0.4 5,356,394 - -2.3 5,356,467 + -1.8 5,356,467 + +0.5 5,356,468 - -0.2 5,356,468 - -1.4 5,356,503 + -1.9 5,356,503 + -0.6 5,356,503 + +0.2 5,356,504 - -1.8 5,356,504 - +1.2 5,356,529 + +0.7 5,356,529 + +0.9 5,356,529 + +0.6 5,356,529 + +0.8 5,356,529 + +0.2 5,356,529 + +0.1 5,356,530 - -0.0 5,356,530 - -0.7 5,356,530 - -1.1 5,356,530 - +1.4 5,356,612 + Pf6N2E2_4628 0.11 -1.0 5,356,612 + Pf6N2E2_4628 0.11 -1.8 5,356,612 + Pf6N2E2_4628 0.11 -0.0 5,356,659 - Pf6N2E2_4628 0.16 +0.5 5,357,006 + Pf6N2E2_4628 0.54 -1.5 5,357,006 + Pf6N2E2_4628 0.54 -0.9 5,357,006 + Pf6N2E2_4628 0.54 -0.0 5,357,007 - Pf6N2E2_4628 0.54 +0.1 5,357,111 + Pf6N2E2_4628 0.66 -0.6 5,357,171 - Pf6N2E2_4628 0.72 +1.5 5,357,222 + Pf6N2E2_4628 0.78 -2.4 5,357,222 + Pf6N2E2_4628 0.78 -0.1 5,357,222 + Pf6N2E2_4628 0.78 -1.0 5,357,222 + Pf6N2E2_4628 0.78 +0.0 5,357,222 + Pf6N2E2_4628 0.78 -0.2 5,357,223 - Pf6N2E2_4628 0.78 -1.0 5,357,223 - Pf6N2E2_4628 0.78 +0.3 5,357,437 + -1.4 5,357,438 - +0.2 5,357,438 - -0.9 5,357,474 + -1.3 5,357,474 + -0.7 5,357,487 + +0.7 5,357,487 + +0.7 5,357,487 + -0.3 5,357,487 + +0.3 5,357,487 + -3.1 5,357,488 - -0.2 5,357,488 - -0.6 5,357,488 - -0.5 5,357,488 - +0.4 5,357,518 + -0.4 5,357,518 + +0.7 5,357,518 + -0.8 5,357,519 - +0.5 5,357,519 - -0.3 5,357,519 - -0.1 5,357,653 - -0.5 5,357,653 - +0.6 5,357,741 + +0.8 5,357,741 + +0.6 5,357,742 - -1.3 5,357,742 - +0.5 5,357,742 - +0.1 5,357,742 - -0.1 5,357,797 + +0.2 5,357,870 + Pf6N2E2_4629 0.21 -0.4 5,357,894 + Pf6N2E2_4629 0.25 +0.6 5,357,894 + Pf6N2E2_4629 0.25 +1.4 5,357,894 + Pf6N2E2_4629 0.25 -0.3 5,357,894 + Pf6N2E2_4629 0.25 -0.3 5,357,972 + Pf6N2E2_4629 0.38 +0.2 5,357,993 + Pf6N2E2_4629 0.41 -0.4 5,357,993 + Pf6N2E2_4629 0.41 +0.6 5,357,993 + Pf6N2E2_4629 0.41 -1.7 5,357,994 - Pf6N2E2_4629 0.41 -0.1 5,357,994 - Pf6N2E2_4629 0.41 -0.5 5,358,131 + Pf6N2E2_4629 0.64 +1.3 5,358,131 + Pf6N2E2_4629 0.64 -0.2 5,358,132 - Pf6N2E2_4629 0.64 -0.4 5,358,230 + Pf6N2E2_4629 0.80 -1.0 5,358,231 - Pf6N2E2_4629 0.80 +0.6 5,358,231 - Pf6N2E2_4629 0.80 -1.8 5,358,244 + Pf6N2E2_4629 0.82 +0.5 5,358,344 + +0.6 5,358,344 + +0.3 5,358,344 + +1.2 5,358,345 - -0.8 5,358,353 + +0.1 5,358,397 + -0.2
Or see this region's nucleotide sequence