Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1726

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1725 and Pf6N2E2_1726 are separated by 244 nucleotidesPf6N2E2_1726 and Pf6N2E2_1727 are separated by 162 nucleotides Pf6N2E2_1725 - Sensory box histidine kinase, at 2,031,826 to 2,034,111 _1725 Pf6N2E2_1726 - 3-methylmercaptopropionyl-CoA ligase (DmdB), at 2,034,356 to 2,035,978 _1726 Pf6N2E2_1727 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 2,036,141 to 2,037,913 _1727 Position (kb) 2034 2035 2036Strain fitness (log2 ratio) -2 -1 0 1 2at 2033.677 kb on + strand, within Pf6N2E2_1725at 2033.678 kb on - strand, within Pf6N2E2_1725at 2033.954 kb on + strandat 2033.955 kb on - strandat 2033.985 kb on - strandat 2034.147 kb on - strandat 2034.174 kb on - strandat 2034.202 kb on - strandat 2034.203 kb on + strandat 2034.206 kb on - strandat 2034.219 kb on + strandat 2034.220 kb on - strandat 2034.322 kb on + strandat 2034.328 kb on + strandat 2034.328 kb on + strandat 2034.328 kb on + strandat 2034.328 kb on + strandat 2034.329 kb on - strandat 2034.329 kb on - strandat 2034.329 kb on - strandat 2034.329 kb on - strandat 2034.329 kb on - strandat 2034.332 kb on - strandat 2034.366 kb on - strandat 2034.366 kb on - strandat 2034.503 kb on + strandat 2034.654 kb on + strand, within Pf6N2E2_1726at 2034.655 kb on - strand, within Pf6N2E2_1726at 2034.708 kb on + strand, within Pf6N2E2_1726at 2034.708 kb on + strand, within Pf6N2E2_1726at 2034.709 kb on - strand, within Pf6N2E2_1726at 2034.709 kb on - strand, within Pf6N2E2_1726at 2034.709 kb on - strand, within Pf6N2E2_1726at 2034.804 kb on - strand, within Pf6N2E2_1726at 2034.907 kb on - strand, within Pf6N2E2_1726at 2034.918 kb on - strand, within Pf6N2E2_1726at 2034.956 kb on + strand, within Pf6N2E2_1726at 2034.957 kb on - strand, within Pf6N2E2_1726at 2034.957 kb on - strand, within Pf6N2E2_1726at 2035.029 kb on - strand, within Pf6N2E2_1726at 2035.029 kb on - strand, within Pf6N2E2_1726at 2035.331 kb on + strand, within Pf6N2E2_1726at 2035.438 kb on - strand, within Pf6N2E2_1726at 2035.438 kb on - strand, within Pf6N2E2_1726at 2035.438 kb on - strand, within Pf6N2E2_1726at 2035.643 kb on + strand, within Pf6N2E2_1726at 2035.825 kb on + strandat 2035.825 kb on + strandat 2035.826 kb on - strandat 2036.390 kb on + strand, within Pf6N2E2_1727at 2036.390 kb on + strand, within Pf6N2E2_1727at 2036.399 kb on + strand, within Pf6N2E2_1727at 2036.399 kb on + strand, within Pf6N2E2_1727at 2036.399 kb on + strand, within Pf6N2E2_1727at 2036.476 kb on - strand, within Pf6N2E2_1727at 2036.495 kb on + strand, within Pf6N2E2_1727at 2036.495 kb on + strand, within Pf6N2E2_1727at 2036.496 kb on - strand, within Pf6N2E2_1727at 2036.591 kb on + strand, within Pf6N2E2_1727at 2036.606 kb on + strand, within Pf6N2E2_1727at 2036.607 kb on - strand, within Pf6N2E2_1727

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,033,677 + Pf6N2E2_1725 0.81 +0.4
2,033,678 - Pf6N2E2_1725 0.81 -1.4
2,033,954 + -1.3
2,033,955 - -0.1
2,033,985 - +1.9
2,034,147 - +1.2
2,034,174 - +0.2
2,034,202 - +1.4
2,034,203 + +0.8
2,034,206 - +1.9
2,034,219 + -1.0
2,034,220 - +2.6
2,034,322 + -0.1
2,034,328 + +0.0
2,034,328 + -1.0
2,034,328 + -1.8
2,034,328 + +0.4
2,034,329 - +0.4
2,034,329 - -1.4
2,034,329 - +0.1
2,034,329 - +1.4
2,034,329 - +1.4
2,034,332 - +1.3
2,034,366 - +1.3
2,034,366 - +1.1
2,034,503 + +0.2
2,034,654 + Pf6N2E2_1726 0.18 +0.4
2,034,655 - Pf6N2E2_1726 0.18 +0.7
2,034,708 + Pf6N2E2_1726 0.22 +1.5
2,034,708 + Pf6N2E2_1726 0.22 +2.2
2,034,709 - Pf6N2E2_1726 0.22 +1.4
2,034,709 - Pf6N2E2_1726 0.22 +1.3
2,034,709 - Pf6N2E2_1726 0.22 +0.4
2,034,804 - Pf6N2E2_1726 0.28 +1.3
2,034,907 - Pf6N2E2_1726 0.34 +0.6
2,034,918 - Pf6N2E2_1726 0.35 +0.2
2,034,956 + Pf6N2E2_1726 0.37 +1.1
2,034,957 - Pf6N2E2_1726 0.37 +0.6
2,034,957 - Pf6N2E2_1726 0.37 +1.3
2,035,029 - Pf6N2E2_1726 0.41 +1.9
2,035,029 - Pf6N2E2_1726 0.41 +1.5
2,035,331 + Pf6N2E2_1726 0.60 -0.2
2,035,438 - Pf6N2E2_1726 0.67 +1.5
2,035,438 - Pf6N2E2_1726 0.67 +2.3
2,035,438 - Pf6N2E2_1726 0.67 +0.6
2,035,643 + Pf6N2E2_1726 0.79 +1.4
2,035,825 + +1.4
2,035,825 + +2.0
2,035,826 - +0.9
2,036,390 + Pf6N2E2_1727 0.14 +0.0
2,036,390 + Pf6N2E2_1727 0.14 +2.0
2,036,399 + Pf6N2E2_1727 0.15 -0.7
2,036,399 + Pf6N2E2_1727 0.15 -0.7
2,036,399 + Pf6N2E2_1727 0.15 -0.1
2,036,476 - Pf6N2E2_1727 0.19 -1.4
2,036,495 + Pf6N2E2_1727 0.20 -0.5
2,036,495 + Pf6N2E2_1727 0.20 -2.7
2,036,496 - Pf6N2E2_1727 0.20 -0.7
2,036,591 + Pf6N2E2_1727 0.25 +0.1
2,036,606 + Pf6N2E2_1727 0.26 +0.4
2,036,607 - Pf6N2E2_1727 0.26 +1.2

Or see this region's nucleotide sequence