Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1725 and Pf6N2E2_1726 are separated by 244 nucleotides Pf6N2E2_1726 and Pf6N2E2_1727 are separated by 162 nucleotides
Pf6N2E2_1725 - Sensory box histidine kinase, at 2,031,826 to 2,034,111
_1725
Pf6N2E2_1726 - 3-methylmercaptopropionyl-CoA ligase (DmdB), at 2,034,356 to 2,035,978
_1726
Pf6N2E2_1727 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 2,036,141 to 2,037,913
_1727
Position (kb)
2034
2035
2036 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2033.677 kb on + strand, within Pf6N2E2_1725 at 2033.678 kb on - strand, within Pf6N2E2_1725 at 2033.954 kb on + strand at 2033.955 kb on - strand at 2033.985 kb on - strand at 2034.147 kb on - strand at 2034.174 kb on - strand at 2034.202 kb on - strand at 2034.203 kb on + strand at 2034.206 kb on - strand at 2034.219 kb on + strand at 2034.220 kb on - strand at 2034.322 kb on + strand at 2034.328 kb on + strand at 2034.328 kb on + strand at 2034.328 kb on + strand at 2034.328 kb on + strand at 2034.329 kb on - strand at 2034.329 kb on - strand at 2034.329 kb on - strand at 2034.329 kb on - strand at 2034.329 kb on - strand at 2034.332 kb on - strand at 2034.366 kb on - strand at 2034.366 kb on - strand at 2034.503 kb on + strand at 2034.654 kb on + strand, within Pf6N2E2_1726 at 2034.655 kb on - strand, within Pf6N2E2_1726 at 2034.708 kb on + strand, within Pf6N2E2_1726 at 2034.708 kb on + strand, within Pf6N2E2_1726 at 2034.709 kb on - strand, within Pf6N2E2_1726 at 2034.709 kb on - strand, within Pf6N2E2_1726 at 2034.709 kb on - strand, within Pf6N2E2_1726 at 2034.804 kb on - strand, within Pf6N2E2_1726 at 2034.907 kb on - strand, within Pf6N2E2_1726 at 2034.918 kb on - strand, within Pf6N2E2_1726 at 2034.956 kb on + strand, within Pf6N2E2_1726 at 2034.957 kb on - strand, within Pf6N2E2_1726 at 2034.957 kb on - strand, within Pf6N2E2_1726 at 2035.029 kb on - strand, within Pf6N2E2_1726 at 2035.029 kb on - strand, within Pf6N2E2_1726 at 2035.331 kb on + strand, within Pf6N2E2_1726 at 2035.438 kb on - strand, within Pf6N2E2_1726 at 2035.438 kb on - strand, within Pf6N2E2_1726 at 2035.438 kb on - strand, within Pf6N2E2_1726 at 2035.643 kb on + strand, within Pf6N2E2_1726 at 2035.825 kb on + strand at 2035.825 kb on + strand at 2035.826 kb on - strand at 2036.390 kb on + strand, within Pf6N2E2_1727 at 2036.390 kb on + strand, within Pf6N2E2_1727 at 2036.399 kb on + strand, within Pf6N2E2_1727 at 2036.399 kb on + strand, within Pf6N2E2_1727 at 2036.399 kb on + strand, within Pf6N2E2_1727 at 2036.476 kb on - strand, within Pf6N2E2_1727 at 2036.495 kb on + strand, within Pf6N2E2_1727 at 2036.495 kb on + strand, within Pf6N2E2_1727 at 2036.496 kb on - strand, within Pf6N2E2_1727 at 2036.591 kb on + strand, within Pf6N2E2_1727 at 2036.606 kb on + strand, within Pf6N2E2_1727 at 2036.607 kb on - strand, within Pf6N2E2_1727
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,033,677 + Pf6N2E2_1725 0.81 +0.4 2,033,678 - Pf6N2E2_1725 0.81 -1.4 2,033,954 + -1.3 2,033,955 - -0.1 2,033,985 - +1.9 2,034,147 - +1.2 2,034,174 - +0.2 2,034,202 - +1.4 2,034,203 + +0.8 2,034,206 - +1.9 2,034,219 + -1.0 2,034,220 - +2.6 2,034,322 + -0.1 2,034,328 + +0.0 2,034,328 + -1.0 2,034,328 + -1.8 2,034,328 + +0.4 2,034,329 - +0.4 2,034,329 - -1.4 2,034,329 - +0.1 2,034,329 - +1.4 2,034,329 - +1.4 2,034,332 - +1.3 2,034,366 - +1.3 2,034,366 - +1.1 2,034,503 + +0.2 2,034,654 + Pf6N2E2_1726 0.18 +0.4 2,034,655 - Pf6N2E2_1726 0.18 +0.7 2,034,708 + Pf6N2E2_1726 0.22 +1.5 2,034,708 + Pf6N2E2_1726 0.22 +2.2 2,034,709 - Pf6N2E2_1726 0.22 +1.4 2,034,709 - Pf6N2E2_1726 0.22 +1.3 2,034,709 - Pf6N2E2_1726 0.22 +0.4 2,034,804 - Pf6N2E2_1726 0.28 +1.3 2,034,907 - Pf6N2E2_1726 0.34 +0.6 2,034,918 - Pf6N2E2_1726 0.35 +0.2 2,034,956 + Pf6N2E2_1726 0.37 +1.1 2,034,957 - Pf6N2E2_1726 0.37 +0.6 2,034,957 - Pf6N2E2_1726 0.37 +1.3 2,035,029 - Pf6N2E2_1726 0.41 +1.9 2,035,029 - Pf6N2E2_1726 0.41 +1.5 2,035,331 + Pf6N2E2_1726 0.60 -0.2 2,035,438 - Pf6N2E2_1726 0.67 +1.5 2,035,438 - Pf6N2E2_1726 0.67 +2.3 2,035,438 - Pf6N2E2_1726 0.67 +0.6 2,035,643 + Pf6N2E2_1726 0.79 +1.4 2,035,825 + +1.4 2,035,825 + +2.0 2,035,826 - +0.9 2,036,390 + Pf6N2E2_1727 0.14 +0.0 2,036,390 + Pf6N2E2_1727 0.14 +2.0 2,036,399 + Pf6N2E2_1727 0.15 -0.7 2,036,399 + Pf6N2E2_1727 0.15 -0.7 2,036,399 + Pf6N2E2_1727 0.15 -0.1 2,036,476 - Pf6N2E2_1727 0.19 -1.4 2,036,495 + Pf6N2E2_1727 0.20 -0.5 2,036,495 + Pf6N2E2_1727 0.20 -2.7 2,036,496 - Pf6N2E2_1727 0.20 -0.7 2,036,591 + Pf6N2E2_1727 0.25 +0.1 2,036,606 + Pf6N2E2_1727 0.26 +0.4 2,036,607 - Pf6N2E2_1727 0.26 +1.2
Or see this region's nucleotide sequence