Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_12

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_10 and Pf6N2E2_11 are separated by 353 nucleotidesPf6N2E2_11 and Pf6N2E2_12 are separated by 144 nucleotidesPf6N2E2_12 and Pf6N2E2_13 are separated by 24 nucleotides Pf6N2E2_10 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 38,724 to 40,382 _10 Pf6N2E2_11 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 40,736 to 40,888 _11 Pf6N2E2_12 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 41,033 to 41,908 _12 Pf6N2E2_13 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 41,933 to 43,213 _13 Position (kb) 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.311 kb on + strandat 40.311 kb on + strandat 40.312 kb on - strandat 40.481 kb on + strandat 40.481 kb on + strandat 40.532 kb on + strandat 40.532 kb on + strandat 40.533 kb on - strandat 40.575 kb on - strandat 40.575 kb on - strandat 40.575 kb on - strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.742 kb on - strandat 40.742 kb on - strandat 40.911 kb on + strandat 40.912 kb on - strandat 40.912 kb on - strandat 40.912 kb on - strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.038 kb on + strandat 41.208 kb on + strand, within Pf6N2E2_12at 41.209 kb on - strand, within Pf6N2E2_12at 41.209 kb on - strand, within Pf6N2E2_12at 41.221 kb on - strand, within Pf6N2E2_12at 41.221 kb on - strand, within Pf6N2E2_12at 41.241 kb on + strand, within Pf6N2E2_12at 41.262 kb on + strand, within Pf6N2E2_12at 41.331 kb on + strand, within Pf6N2E2_12at 41.359 kb on - strand, within Pf6N2E2_12at 41.484 kb on + strand, within Pf6N2E2_12at 41.484 kb on + strand, within Pf6N2E2_12at 41.484 kb on + strand, within Pf6N2E2_12at 41.485 kb on - strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.536 kb on - strand, within Pf6N2E2_12at 41.536 kb on - strand, within Pf6N2E2_12at 41.536 kb on - strand, within Pf6N2E2_12at 41.623 kb on - strand, within Pf6N2E2_12at 42.189 kb on + strand, within Pf6N2E2_13at 42.360 kb on + strand, within Pf6N2E2_13at 42.361 kb on - strand, within Pf6N2E2_13at 42.361 kb on - strand, within Pf6N2E2_13at 42.507 kb on + strand, within Pf6N2E2_13at 42.508 kb on - strand, within Pf6N2E2_13at 42.508 kb on - strand, within Pf6N2E2_13at 42.508 kb on - strand, within Pf6N2E2_13at 42.508 kb on - strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.823 kb on - strand, within Pf6N2E2_13at 42.823 kb on - strand, within Pf6N2E2_13

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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40,106 + Pf6N2E2_10 0.83 -0.3
40,106 + Pf6N2E2_10 0.83 +1.1
40,106 + Pf6N2E2_10 0.83 +0.4
40,106 + Pf6N2E2_10 0.83 +0.8
40,106 + Pf6N2E2_10 0.83 -0.7
40,311 + +0.9
40,311 + +0.1
40,312 - +0.1
40,481 + -0.0
40,481 + +1.0
40,532 + +0.6
40,532 + -0.1
40,533 - +0.7
40,575 - +0.9
40,575 - -0.7
40,575 - -0.1
40,737 + +0.4
40,737 + -1.4
40,737 + -0.4
40,737 + +0.6
40,737 + +1.4
40,737 + +0.7
40,738 - -2.1
40,738 - +0.8
40,738 - +0.3
40,738 - -0.9
40,738 - -1.7
40,738 - -1.8
40,738 - -0.5
40,738 - -1.2
40,742 - +1.0
40,742 - -1.4
40,911 + +2.7
40,912 - -0.2
40,912 - +1.4
40,912 - +0.9
41,034 + +0.6
41,034 + -1.2
41,034 + -0.7
41,034 + -1.1
41,034 + -0.6
41,035 - +0.9
41,035 - +0.8
41,035 - -0.2
41,035 - -0.7
41,035 - -0.6
41,035 - +0.6
41,035 - +0.3
41,035 - -0.1
41,035 - -0.5
41,035 - +0.6
41,035 - +0.9
41,038 + -0.4
41,208 + Pf6N2E2_12 0.20 -0.8
41,209 - Pf6N2E2_12 0.20 +0.7
41,209 - Pf6N2E2_12 0.20 +1.7
41,221 - Pf6N2E2_12 0.21 +1.3
41,221 - Pf6N2E2_12 0.21 -0.0
41,241 + Pf6N2E2_12 0.24 -0.7
41,262 + Pf6N2E2_12 0.26 +0.1
41,331 + Pf6N2E2_12 0.34 +1.5
41,359 - Pf6N2E2_12 0.37 -1.4
41,484 + Pf6N2E2_12 0.51 -0.2
41,484 + Pf6N2E2_12 0.51 +0.1
41,484 + Pf6N2E2_12 0.51 +1.2
41,485 - Pf6N2E2_12 0.52 +1.1
41,535 + Pf6N2E2_12 0.57 +1.3
41,535 + Pf6N2E2_12 0.57 +0.3
41,535 + Pf6N2E2_12 0.57 +1.0
41,535 + Pf6N2E2_12 0.57 +0.5
41,535 + Pf6N2E2_12 0.57 +1.5
41,536 - Pf6N2E2_12 0.57 -0.9
41,536 - Pf6N2E2_12 0.57 +0.1
41,536 - Pf6N2E2_12 0.57 +0.5
41,623 - Pf6N2E2_12 0.67 +1.3
42,189 + Pf6N2E2_13 0.20 +0.8
42,360 + Pf6N2E2_13 0.33 -0.4
42,361 - Pf6N2E2_13 0.33 -0.1
42,361 - Pf6N2E2_13 0.33 +0.5
42,507 + Pf6N2E2_13 0.45 -0.0
42,508 - Pf6N2E2_13 0.45 +1.8
42,508 - Pf6N2E2_13 0.45 -3.0
42,508 - Pf6N2E2_13 0.45 +0.7
42,508 - Pf6N2E2_13 0.45 -0.8
42,822 + Pf6N2E2_13 0.69 -0.2
42,822 + Pf6N2E2_13 0.69 +0.9
42,822 + Pf6N2E2_13 0.69 +1.8
42,822 + Pf6N2E2_13 0.69 -1.0
42,822 + Pf6N2E2_13 0.69 +0.1
42,823 - Pf6N2E2_13 0.69 +0.2
42,823 - Pf6N2E2_13 0.69 +0.7

Or see this region's nucleotide sequence