Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_722

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_721 and Pf1N1B4_722 are separated by 4 nucleotidesPf1N1B4_722 and Pf1N1B4_723 are separated by 148 nucleotides Pf1N1B4_721 - InaA protein, at 824,741 to 825,454 _721 Pf1N1B4_722 - SAM-dependent methyltransferases, at 825,459 to 826,127 _722 Pf1N1B4_723 - two-component system sensor protein, at 826,276 to 827,556 _723 Position (kb) 825 826 827Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 824.492 kb on + strandat 824.492 kb on + strandat 824.492 kb on + strandat 824.493 kb on - strandat 824.493 kb on - strandat 824.493 kb on - strandat 824.556 kb on + strandat 824.557 kb on - strandat 824.742 kb on + strandat 824.743 kb on - strandat 824.743 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.778 kb on + strandat 824.951 kb on + strand, within Pf1N1B4_721at 824.951 kb on + strand, within Pf1N1B4_721at 824.951 kb on + strand, within Pf1N1B4_721at 824.952 kb on - strand, within Pf1N1B4_721at 824.952 kb on - strand, within Pf1N1B4_721at 824.952 kb on - strand, within Pf1N1B4_721at 824.964 kb on + strand, within Pf1N1B4_721at 824.965 kb on - strand, within Pf1N1B4_721at 824.965 kb on - strand, within Pf1N1B4_721at 824.965 kb on - strand, within Pf1N1B4_721at 824.965 kb on - strand, within Pf1N1B4_721at 824.965 kb on - strandat 824.968 kb on + strand, within Pf1N1B4_721at 824.968 kb on + strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strandat 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 824.969 kb on - strand, within Pf1N1B4_721at 825.054 kb on + strand, within Pf1N1B4_721at 825.270 kb on + strand, within Pf1N1B4_721at 825.271 kb on - strand, within Pf1N1B4_721at 825.271 kb on - strand, within Pf1N1B4_721at 825.271 kb on - strand, within Pf1N1B4_721at 825.274 kb on + strand, within Pf1N1B4_721at 825.275 kb on - strand, within Pf1N1B4_721at 825.275 kb on - strand, within Pf1N1B4_721at 825.275 kb on - strand, within Pf1N1B4_721at 825.275 kb on - strand, within Pf1N1B4_721at 825.275 kb on - strand, within Pf1N1B4_721at 825.275 kb on - strand, within Pf1N1B4_721at 825.275 kb on - strand, within Pf1N1B4_721at 825.275 kb on - strand, within Pf1N1B4_721at 825.297 kb on + strand, within Pf1N1B4_721at 825.298 kb on - strand, within Pf1N1B4_721at 825.372 kb on - strand, within Pf1N1B4_721at 825.400 kb on - strandat 825.461 kb on - strandat 825.461 kb on - strandat 825.471 kb on + strandat 825.472 kb on - strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.475 kb on - strandat 825.478 kb on + strandat 825.478 kb on + strandat 825.478 kb on + strandat 825.478 kb on + strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.481 kb on - strandat 825.496 kb on + strandat 825.496 kb on + strandat 825.496 kb on + strandat 825.497 kb on - strandat 825.497 kb on - strandat 825.497 kb on - strandat 825.605 kb on + strand, within Pf1N1B4_722at 825.822 kb on + strand, within Pf1N1B4_722at 825.822 kb on + strand, within Pf1N1B4_722at 826.066 kb on + strandat 826.067 kb on - strandat 826.090 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.165 kb on - strandat 826.165 kb on - strandat 826.165 kb on - strandat 826.165 kb on - strandat 826.165 kb on - strandat 826.169 kb on - strandat 826.216 kb on + strandat 826.216 kb on + strandat 826.216 kb on + strandat 826.217 kb on - strandat 826.472 kb on - strand, within Pf1N1B4_723at 826.472 kb on - strand, within Pf1N1B4_723at 826.472 kb on - strand, within Pf1N1B4_723at 826.523 kb on + strand, within Pf1N1B4_723at 826.523 kb on + strand, within Pf1N1B4_723at 826.523 kb on + strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.539 kb on - strand, within Pf1N1B4_723at 826.539 kb on - strand, within Pf1N1B4_723at 826.539 kb on - strand, within Pf1N1B4_723at 826.551 kb on + strand, within Pf1N1B4_723at 826.551 kb on + strand, within Pf1N1B4_723at 826.594 kb on - strand, within Pf1N1B4_723at 826.594 kb on - strand, within Pf1N1B4_723at 826.596 kb on - strand, within Pf1N1B4_723at 826.675 kb on + strand, within Pf1N1B4_723at 826.888 kb on + strand, within Pf1N1B4_723at 826.888 kb on + strand, within Pf1N1B4_723at 826.888 kb on + strand, within Pf1N1B4_723at 826.889 kb on - strand, within Pf1N1B4_723at 826.889 kb on - strand, within Pf1N1B4_723at 826.889 kb on - strand, within Pf1N1B4_723at 826.889 kb on - strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.029 kb on + strand, within Pf1N1B4_723at 827.113 kb on + strand, within Pf1N1B4_723at 827.114 kb on - strand, within Pf1N1B4_723

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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824,492 + +0.1
824,492 + -0.1
824,492 + +0.4
824,493 - +0.3
824,493 - -1.3
824,493 - -0.8
824,556 + -1.8
824,557 - +0.3
824,742 + -1.1
824,743 - -1.2
824,743 - -0.0
824,745 - +0.3
824,745 - -1.3
824,745 - +0.9
824,778 + -0.5
824,951 + Pf1N1B4_721 0.29 -0.7
824,951 + Pf1N1B4_721 0.29 +0.3
824,951 + Pf1N1B4_721 0.29 -1.3
824,952 - Pf1N1B4_721 0.30 +0.5
824,952 - Pf1N1B4_721 0.30 +0.3
824,952 - Pf1N1B4_721 0.30 -1.5
824,964 + Pf1N1B4_721 0.31 +0.6
824,965 - Pf1N1B4_721 0.31 +1.9
824,965 - Pf1N1B4_721 0.31 -0.3
824,965 - Pf1N1B4_721 0.31 +1.3
824,965 - Pf1N1B4_721 0.31 -1.0
824,965 - +1.3
824,968 + Pf1N1B4_721 0.32 -0.5
824,968 + Pf1N1B4_721 0.32 +0.5
824,969 - Pf1N1B4_721 0.32 -1.3
824,969 - Pf1N1B4_721 0.32 -0.3
824,969 - Pf1N1B4_721 0.32 -1.1
824,969 - Pf1N1B4_721 0.32 +0.7
824,969 - Pf1N1B4_721 0.32 +0.3
824,969 - Pf1N1B4_721 0.32 +0.6
824,969 - +0.3
824,969 - Pf1N1B4_721 0.32 -0.7
824,969 - Pf1N1B4_721 0.32 +0.6
824,969 - Pf1N1B4_721 0.32 +0.3
824,969 - Pf1N1B4_721 0.32 -1.8
825,054 + Pf1N1B4_721 0.44 +0.3
825,270 + Pf1N1B4_721 0.74 -0.9
825,271 - Pf1N1B4_721 0.74 +0.0
825,271 - Pf1N1B4_721 0.74 -1.1
825,271 - Pf1N1B4_721 0.74 -0.8
825,274 + Pf1N1B4_721 0.75 -1.4
825,275 - Pf1N1B4_721 0.75 +1.3
825,275 - Pf1N1B4_721 0.75 -0.3
825,275 - Pf1N1B4_721 0.75 -0.3
825,275 - Pf1N1B4_721 0.75 -2.6
825,275 - Pf1N1B4_721 0.75 -1.7
825,275 - Pf1N1B4_721 0.75 -0.3
825,275 - Pf1N1B4_721 0.75 +0.1
825,275 - Pf1N1B4_721 0.75 -0.3
825,297 + Pf1N1B4_721 0.78 -0.7
825,298 - Pf1N1B4_721 0.78 -1.3
825,372 - Pf1N1B4_721 0.88 -0.8
825,400 - -2.0
825,461 - -0.1
825,461 - -0.3
825,471 + -0.1
825,472 - -0.5
825,474 + -2.5
825,474 + -0.3
825,474 + -1.0
825,474 + +1.3
825,474 + -0.7
825,474 + -0.7
825,474 + -0.7
825,474 + -0.8
825,475 - -0.7
825,478 + +1.3
825,478 + -1.8
825,478 + +0.7
825,478 + -0.7
825,479 - -0.3
825,479 - -0.4
825,479 - -1.0
825,479 - +0.6
825,479 - +0.3
825,479 - -0.7
825,481 - -0.3
825,496 + -0.5
825,496 + +0.3
825,496 + +0.3
825,497 - +0.7
825,497 - -0.0
825,497 - +1.9
825,605 + Pf1N1B4_722 0.22 -2.1
825,822 + Pf1N1B4_722 0.54 -1.0
825,822 + Pf1N1B4_722 0.54 +0.2
826,066 + -0.7
826,067 - -0.5
826,090 + -0.1
826,164 + +0.1
826,164 + +1.3
826,164 + +0.6
826,164 + +0.1
826,164 + -0.5
826,164 + -0.4
826,164 + -0.7
826,164 + +0.0
826,164 + +0.9
826,164 + -1.3
826,164 + -1.3
826,164 + -0.4
826,164 + +1.1
826,164 + -0.3
826,164 + +0.0
826,164 + -0.7
826,165 - -0.7
826,165 - -0.5
826,165 - -1.1
826,165 - -1.2
826,165 - +0.9
826,169 - -1.7
826,216 + +0.9
826,216 + +1.0
826,216 + +0.5
826,217 - +0.3
826,472 - Pf1N1B4_723 0.15 -1.1
826,472 - Pf1N1B4_723 0.15 -0.6
826,472 - Pf1N1B4_723 0.15 +0.2
826,523 + Pf1N1B4_723 0.19 -0.3
826,523 + Pf1N1B4_723 0.19 -0.2
826,523 + Pf1N1B4_723 0.19 -0.3
826,524 - Pf1N1B4_723 0.19 +0.0
826,524 - Pf1N1B4_723 0.19 -1.7
826,524 - Pf1N1B4_723 0.19 -0.8
826,524 - Pf1N1B4_723 0.19 -0.4
826,524 - Pf1N1B4_723 0.19 -0.4
826,524 - Pf1N1B4_723 0.19 -1.4
826,524 - Pf1N1B4_723 0.19 -0.8
826,538 + Pf1N1B4_723 0.20 +0.0
826,538 + Pf1N1B4_723 0.20 -0.2
826,538 + Pf1N1B4_723 0.20 +0.3
826,538 + Pf1N1B4_723 0.20 +0.2
826,538 + Pf1N1B4_723 0.20 +0.1
826,538 + Pf1N1B4_723 0.20 -1.5
826,538 + Pf1N1B4_723 0.20 -0.4
826,539 - Pf1N1B4_723 0.21 +0.3
826,539 - Pf1N1B4_723 0.21 -0.2
826,539 - Pf1N1B4_723 0.21 -1.4
826,551 + Pf1N1B4_723 0.21 -2.6
826,551 + Pf1N1B4_723 0.21 +0.6
826,594 - Pf1N1B4_723 0.25 -1.5
826,594 - Pf1N1B4_723 0.25 +0.3
826,596 - Pf1N1B4_723 0.25 +1.3
826,675 + Pf1N1B4_723 0.31 +1.1
826,888 + Pf1N1B4_723 0.48 +0.2
826,888 + Pf1N1B4_723 0.48 -1.6
826,888 + Pf1N1B4_723 0.48 -0.4
826,889 - Pf1N1B4_723 0.48 +1.1
826,889 - Pf1N1B4_723 0.48 -0.6
826,889 - Pf1N1B4_723 0.48 +0.1
826,889 - Pf1N1B4_723 0.48 -2.1
827,000 + Pf1N1B4_723 0.57 -0.7
827,000 + Pf1N1B4_723 0.57 +1.7
827,000 + Pf1N1B4_723 0.57 -0.3
827,000 + Pf1N1B4_723 0.57 -1.7
827,000 + Pf1N1B4_723 0.57 -1.4
827,000 + Pf1N1B4_723 0.57 -0.6
827,001 - Pf1N1B4_723 0.57 -1.1
827,001 - Pf1N1B4_723 0.57 -0.6
827,001 - Pf1N1B4_723 0.57 -0.7
827,001 - Pf1N1B4_723 0.57 -1.1
827,001 - Pf1N1B4_723 0.57 -0.3
827,001 - Pf1N1B4_723 0.57 -0.2
827,001 - Pf1N1B4_723 0.57 -3.0
827,001 - Pf1N1B4_723 0.57 -1.4
827,029 + Pf1N1B4_723 0.59 +0.7
827,113 + Pf1N1B4_723 0.65 -0.6
827,114 - Pf1N1B4_723 0.65 -0.5

Or see this region's nucleotide sequence