Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4166 and Pf1N1B4_4167 are separated by 122 nucleotides Pf1N1B4_4167 and Pf1N1B4_4168 overlap by 1 nucleotides Pf1N1B4_4168 and Pf1N1B4_4169 are separated by 1 nucleotides Pf1N1B4_4169 and Pf1N1B4_4170 are separated by 387 nucleotides
Pf1N1B4_4166 - Transcriptional regulator, LysR family, at 4,616,918 to 4,617,823
_4166
Pf1N1B4_4167 - hypothetical protein, at 4,617,946 to 4,618,296
_4167
Pf1N1B4_4168 - putative membrane protein, at 4,618,296 to 4,618,808
_4168
Pf1N1B4_4169 - Hydrolases of the alpha/beta superfamily, at 4,618,810 to 4,619,559
_4169
Pf1N1B4_4170 - putative oxidoreductase, at 4,619,947 to 4,620,765
_4170
Position (kb) 4618
4619
4620 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4618.421 kb on + strand, within Pf1N1B4_4168 at 4618.421 kb on + strand, within Pf1N1B4_4168 at 4618.421 kb on + strand, within Pf1N1B4_4168 at 4618.422 kb on - strand at 4618.422 kb on - strand at 4618.422 kb on - strand at 4618.422 kb on - strand, within Pf1N1B4_4168 at 4618.493 kb on + strand, within Pf1N1B4_4168 at 4618.800 kb on + strand at 4618.800 kb on + strand at 4618.838 kb on + strand at 4618.919 kb on + strand, within Pf1N1B4_4169 at 4618.919 kb on + strand, within Pf1N1B4_4169 at 4618.919 kb on + strand at 4618.919 kb on + strand, within Pf1N1B4_4169 at 4618.920 kb on - strand, within Pf1N1B4_4169 at 4619.182 kb on - strand, within Pf1N1B4_4169 at 4619.198 kb on + strand, within Pf1N1B4_4169 at 4619.291 kb on + strand at 4619.291 kb on + strand, within Pf1N1B4_4169 at 4619.291 kb on + strand, within Pf1N1B4_4169 at 4619.291 kb on + strand, within Pf1N1B4_4169 at 4619.291 kb on + strand, within Pf1N1B4_4169 at 4619.291 kb on + strand, within Pf1N1B4_4169 at 4619.480 kb on + strand, within Pf1N1B4_4169 at 4619.480 kb on + strand, within Pf1N1B4_4169 at 4619.480 kb on + strand, within Pf1N1B4_4169 at 4619.480 kb on + strand, within Pf1N1B4_4169 at 4619.480 kb on + strand, within Pf1N1B4_4169 at 4619.480 kb on + strand, within Pf1N1B4_4169 at 4619.528 kb on + strand at 4619.580 kb on + strand at 4619.581 kb on - strand at 4619.624 kb on + strand at 4619.829 kb on + strand at 4619.830 kb on - strand at 4619.905 kb on + strand at 4619.905 kb on + strand at 4620.008 kb on - strand at 4620.043 kb on + strand, within Pf1N1B4_4170 at 4620.115 kb on + strand, within Pf1N1B4_4170 at 4620.115 kb on + strand, within Pf1N1B4_4170 at 4620.115 kb on + strand, within Pf1N1B4_4170 at 4620.116 kb on - strand, within Pf1N1B4_4170 at 4620.116 kb on - strand, within Pf1N1B4_4170 at 4620.116 kb on - strand, within Pf1N1B4_4170 at 4620.265 kb on - strand, within Pf1N1B4_4170 at 4620.370 kb on + strand, within Pf1N1B4_4170 at 4620.443 kb on - strand, within Pf1N1B4_4170
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 4,618,421 + Pf1N1B4_4168 0.24 -0.6 4,618,421 + Pf1N1B4_4168 0.24 -1.0 4,618,421 + Pf1N1B4_4168 0.24 -0.4 4,618,422 - -0.0 4,618,422 - +0.6 4,618,422 - -1.6 4,618,422 - Pf1N1B4_4168 0.25 +0.7 4,618,493 + Pf1N1B4_4168 0.38 +0.3 4,618,800 + +0.6 4,618,800 + -0.6 4,618,838 + -0.6 4,618,919 + Pf1N1B4_4169 0.15 -1.9 4,618,919 + Pf1N1B4_4169 0.15 -1.7 4,618,919 + +2.0 4,618,919 + Pf1N1B4_4169 0.15 -0.9 4,618,920 - Pf1N1B4_4169 0.15 -1.0 4,619,182 - Pf1N1B4_4169 0.50 -2.0 4,619,198 + Pf1N1B4_4169 0.52 +0.5 4,619,291 + +1.5 4,619,291 + Pf1N1B4_4169 0.64 +0.2 4,619,291 + Pf1N1B4_4169 0.64 +0.4 4,619,291 + Pf1N1B4_4169 0.64 -0.6 4,619,291 + Pf1N1B4_4169 0.64 +0.4 4,619,291 + Pf1N1B4_4169 0.64 -1.6 4,619,480 + Pf1N1B4_4169 0.89 -1.2 4,619,480 + Pf1N1B4_4169 0.89 +1.0 4,619,480 + Pf1N1B4_4169 0.89 -1.5 4,619,480 + Pf1N1B4_4169 0.89 -0.5 4,619,480 + Pf1N1B4_4169 0.89 -2.0 4,619,480 + Pf1N1B4_4169 0.89 -1.6 4,619,528 + +0.1 4,619,580 + -0.9 4,619,581 - -0.4 4,619,624 + +0.6 4,619,829 + -0.3 4,619,830 - -1.0 4,619,905 + -1.4 4,619,905 + +0.2 4,620,008 - +0.2 4,620,043 + Pf1N1B4_4170 0.12 -1.0 4,620,115 + Pf1N1B4_4170 0.21 -0.0 4,620,115 + Pf1N1B4_4170 0.21 -0.4 4,620,115 + Pf1N1B4_4170 0.21 +1.0 4,620,116 - Pf1N1B4_4170 0.21 -2.0 4,620,116 - Pf1N1B4_4170 0.21 +0.4 4,620,116 - Pf1N1B4_4170 0.21 +0.4 4,620,265 - Pf1N1B4_4170 0.39 -0.3 4,620,370 + Pf1N1B4_4170 0.52 +0.1 4,620,443 - Pf1N1B4_4170 0.61 -0.9
Or see this region's nucleotide sequence