Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2729

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
3,067,569	+		Pf1N1B4_2728	0.68	-0.3
3,067,570	-		Pf1N1B4_2728	0.68	+1.5
3,067,865	+		Pf1N1B4_2728	0.80	+0.5
3,067,961	+		Pf1N1B4_2728	0.84	+0.5
3,067,961	+		Pf1N1B4_2728	0.84	+0.1
3,068,000	+		Pf1N1B4_2728	0.86	+0.6
3,068,000	+		Pf1N1B4_2728	0.86	+0.9
3,068,000	+		Pf1N1B4_2728	0.86	+0.5
3,068,000	+		Pf1N1B4_2728	0.86	+0.7
3,068,000	+		Pf1N1B4_2728	0.86	-0.1
3,068,000	+		Pf1N1B4_2728	0.86	+0.3
3,068,091	+		Pf1N1B4_2728	0.89	+1.0
3,068,259	+				+0.7
3,068,259	+				+0.2
3,068,260	-				+0.9
3,068,260	-				-0.9
3,068,304	+				+0.1
3,068,361	+				-0.9
3,068,433	+				+1.1
3,068,433	+				+0.3
3,068,433	+				-1.3
3,068,433	+				-0.1
3,068,433	+				-0.7
3,068,433	+				-0.1
3,068,433	+				+0.4
3,068,433	+				-0.2
3,068,433	+				-0.3
3,068,433	+				-0.1
3,068,433	+				-0.9
3,068,433	+				-0.1
3,068,433	+				-1.7
3,068,433	+				-0.4
3,068,433	+				-0.9
3,068,433	+				+0.2
3,068,433	+				+0.9
3,068,433	+				-1.0
3,068,433	+				-1.1
3,068,433	+				+0.5
3,068,433	+				+0.1
3,068,433	+				+0.5
3,068,434	-				-0.3
3,068,434	-				-1.5
3,068,434	-				-1.1
3,068,434	-				+0.5
3,068,434	-				-1.3
3,068,434	-				-0.9
3,068,434	-				-1.6
3,068,434	-				-1.3
3,068,434	-				-0.3
3,068,434	-				-0.7
3,068,434	-				+0.2
3,068,434	-				+0.6
3,068,434	-				+0.1
3,068,434	-				-1.7
3,068,434	-				+1.1
3,068,434	-				+0.5
3,068,434	-				+0.5
3,068,434	-				-1.6
3,068,434	-				+0.9
3,068,434	-				-0.5
3,068,434	-				+1.3
3,068,434	-				-0.7
3,068,434	-				-0.9
3,068,434	-				-1.5
3,068,567	+				+0.5
3,068,567	+				-2.3
3,068,567	+				+0.2
3,068,567	+				+1.0
3,068,567	+				-0.5
3,068,567	+				+0.8
3,068,567	+				-0.1
3,068,567	+				+0.5
3,068,567	+				-0.3
3,068,567	+				+0.3
3,068,567	+				-0.8
3,068,568	-				-1.5
3,068,568	-				+0.2
3,068,615	-		Pf1N1B4_2729	0.10	+0.5
3,068,624	-		Pf1N1B4_2729	0.11	+0.5
3,068,624	-		Pf1N1B4_2729	0.11	+0.4
3,068,624	-		Pf1N1B4_2729	0.11	-1.0
3,068,732	-		Pf1N1B4_2729	0.21	+0.8
3,068,747	+		Pf1N1B4_2729	0.22	-0.1
3,068,747	+		Pf1N1B4_2729	0.22	+1.5
3,068,747	+		Pf1N1B4_2729	0.22	+0.2
3,068,747	+		Pf1N1B4_2729	0.22	+0.2
3,068,747	+		Pf1N1B4_2729	0.22	-0.9
3,068,747	+		Pf1N1B4_2729	0.22	-1.5
3,068,748	-		Pf1N1B4_2729	0.22	+0.5
3,068,748	-		Pf1N1B4_2729	0.22	-0.7
3,068,748	-		Pf1N1B4_2729	0.22	+0.2
3,068,748	-		Pf1N1B4_2729	0.22	-0.9
3,068,748	-		Pf1N1B4_2729	0.22	-1.5
3,068,748	-		Pf1N1B4_2729	0.22	-0.4
3,068,748	-				-0.5
3,068,748	-		Pf1N1B4_2729	0.22	-0.6
3,068,748	-		Pf1N1B4_2729	0.22	+0.6
3,068,748	-		Pf1N1B4_2729	0.22	-0.9
3,068,770	+		Pf1N1B4_2729	0.24	+1.2
3,068,771	-		Pf1N1B4_2729	0.25	+0.2
3,068,803	+		Pf1N1B4_2729	0.28	-1.0
3,068,866	+		Pf1N1B4_2729	0.33	-0.3
3,068,866	+		Pf1N1B4_2729	0.33	+0.1
3,068,866	+		Pf1N1B4_2729	0.33	-1.9
3,068,866	+		Pf1N1B4_2729	0.33	-0.8
3,068,866	+		Pf1N1B4_2729	0.33	+0.1
3,068,866	+		Pf1N1B4_2729	0.33	+1.9
3,068,867	-		Pf1N1B4_2729	0.33	+0.2
3,068,867	-				+0.5
3,068,867	-		Pf1N1B4_2729	0.33	+1.2
3,068,867	-		Pf1N1B4_2729	0.33	-0.1
3,068,867	-		Pf1N1B4_2729	0.33	-0.5
3,069,054	+		Pf1N1B4_2729	0.51	+0.1
3,069,124	+		Pf1N1B4_2729	0.57	+0.1
3,069,124	+		Pf1N1B4_2729	0.57	-0.1
3,069,229	+		Pf1N1B4_2729	0.67	+1.9
3,069,386	-		Pf1N1B4_2729	0.81	+0.4
3,069,403	+		Pf1N1B4_2729	0.83	-1.3
3,069,403	+		Pf1N1B4_2729	0.83	+0.9
3,069,517	+				-1.3
3,069,517	+				+1.8
3,069,597	+				-1.3
3,069,598	-				-0.5
3,069,598	-				-1.1
3,069,599	+				-1.1
3,069,599	+				-1.3
3,069,599	+				+0.9
3,069,600	-				-0.5
3,069,600	-				-0.1
3,069,600	-				-1.9
3,069,605	+				+0.2
3,069,656	+				+0.1
3,069,816	-		Pf1N1B4_2730	0.21	-0.1
3,069,962	+		Pf1N1B4_2730	0.42	+0.5
3,070,010	+				+1.5
3,070,010	+		Pf1N1B4_2730	0.49	+0.5
3,070,010	+		Pf1N1B4_2730	0.49	-0.7
3,070,010	+		Pf1N1B4_2730	0.49	-0.1
3,070,010	+		Pf1N1B4_2730	0.49	-0.9
3,070,011	-		Pf1N1B4_2730	0.50	-0.6
3,070,163	+		Pf1N1B4_2730	0.72	+0.1
3,070,163	+		Pf1N1B4_2730	0.72	+0.3
3,070,163	+		Pf1N1B4_2730	0.72	-0.0
3,070,163	+		Pf1N1B4_2730	0.72	-0.8
3,070,163	+		Pf1N1B4_2730	0.72	-1.9
3,070,163	+		Pf1N1B4_2730	0.72	-0.5
3,070,164	-		Pf1N1B4_2730	0.72	-0.5
3,070,164	-		Pf1N1B4_2730	0.72	+1.5
3,070,164	-		Pf1N1B4_2730	0.72	-1.1
3,070,164	-		Pf1N1B4_2730	0.72	+0.3
3,070,164	-		Pf1N1B4_2730	0.72	-1.3
3,070,164	-		Pf1N1B4_2730	0.72	-0.8
3,070,165	+		Pf1N1B4_2730	0.72	-1.3
3,070,165	+		Pf1N1B4_2730	0.72	+0.6
3,070,192	+		Pf1N1B4_2730	0.76	-0.2
3,070,192	+		Pf1N1B4_2730	0.76	-1.3
3,070,193	-		Pf1N1B4_2730	0.77	-1.3
3,070,193	-		Pf1N1B4_2730	0.77	+1.5
3,070,193	-		Pf1N1B4_2730	0.77	-1.9
3,070,193	-		Pf1N1B4_2730	0.77	-1.3
3,070,316	+				+0.1
3,070,316	+				+1.0
3,070,316	+				-0.9
3,070,317	-				+0.6
3,070,317	-				-1.3
3,070,317	-				+0.5
3,070,317	-				+0.1
3,070,317	-				+0.5
3,070,317	-				+0.0
3,070,333	+				-0.8
3,070,334	-				+0.9
3,070,334	-				+0.1
3,070,334	-				+0.1
3,070,334	-				+0.3
3,070,334	-				+1.1
3,070,334	-				+0.6
3,070,334	-				+0.5
3,070,334	-				-1.0
3,070,334	-				-0.5
3,070,388	+				+0.5
3,070,418	+				+0.1
3,070,418	+				+0.9
3,070,418	+				-0.1
3,070,418	+				-0.6
3,070,419	-				+1.1
3,070,419	-				+0.8
3,070,419	-				+0.6
3,070,452	-				-0.8
3,070,503	+				-0.5
3,070,517	+				-0.2
3,070,517	+				-1.3
3,070,517	+				+0.0
3,070,517	+				+0.9
3,070,517	+				-0.1
3,070,518	-				-0.8
3,070,518	-				+1.5