Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2191

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
2,502,148	+		Pf1N1B4_2189	0.60	+1.2
2,502,148	+		Pf1N1B4_2189	0.60	-1.3
2,502,149	-		Pf1N1B4_2189	0.60	-0.2
2,502,149	-		Pf1N1B4_2189	0.60	+0.1
2,502,149	-		Pf1N1B4_2189	0.60	-0.5
2,502,365	+				+0.1
2,502,375	+				+1.0
2,502,375	+				+0.7
2,502,375	+				-0.7
2,502,384	+				-0.0
2,502,385	-				-0.7
2,502,385	-				-0.1
2,502,385	-				-0.3
2,502,395	+				-0.9
2,502,395	+				-0.7
2,502,422	+				-1.1
2,502,450	+				-0.3
2,502,450	+				-0.1
2,502,450	+				-1.4
2,502,450	+				+2.3
2,502,451	-				+0.1
2,502,451	-				+0.3
2,502,451	-				-1.2
2,502,451	-				+0.9
2,502,451	-				-0.0
2,502,451	-				+1.1
2,502,451	-				+2.2
2,502,451	-				-0.4
2,502,451	-				+0.5
2,502,510	+				+0.1
2,502,510	+				+0.4
2,502,511	-				+0.1
2,502,511	-				-0.9
2,502,511	-				+0.7
2,502,511	-				+0.5
2,502,643	+		Pf1N1B4_2190	0.21	+0.9
2,502,643	+				+0.1
2,502,643	+		Pf1N1B4_2190	0.21	-1.5
2,502,644	-		Pf1N1B4_2190	0.21	-0.1
2,502,644	-		Pf1N1B4_2190	0.21	-1.5
2,502,644	-		Pf1N1B4_2190	0.21	-0.7
2,502,724	+		Pf1N1B4_2190	0.39	-1.5
2,502,724	+		Pf1N1B4_2190	0.39	+1.7
2,502,724	+		Pf1N1B4_2190	0.39	+0.4
2,502,725	-		Pf1N1B4_2190	0.39	-0.1
2,502,725	-		Pf1N1B4_2190	0.39	-0.9
2,502,751	+		Pf1N1B4_2190	0.44	+1.3
2,502,751	+		Pf1N1B4_2190	0.44	-0.2
2,502,751	+		Pf1N1B4_2190	0.44	+0.5
2,502,751	+		Pf1N1B4_2190	0.44	-1.1
2,502,752	-		Pf1N1B4_2190	0.45	-1.2
2,502,752	-		Pf1N1B4_2190	0.45	-1.7
2,502,752	-		Pf1N1B4_2190	0.45	+0.3
2,502,789	+		Pf1N1B4_2190	0.53	-1.4
2,502,820	+		Pf1N1B4_2190	0.59	+0.9
2,502,869	+		Pf1N1B4_2190	0.70	-0.3
2,502,869	+		Pf1N1B4_2190	0.70	-0.7
2,502,869	+		Pf1N1B4_2190	0.70	-0.1
2,502,869	+		Pf1N1B4_2190	0.70	-0.3
2,502,869	+		Pf1N1B4_2190	0.70	-1.1
2,502,869	+		Pf1N1B4_2190	0.70	+0.9
2,502,869	+		Pf1N1B4_2190	0.70	+0.2
2,502,869	+		Pf1N1B4_2190	0.70	-0.2
2,502,869	+		Pf1N1B4_2190	0.70	-0.1
2,502,869	+		Pf1N1B4_2190	0.70	-1.0
2,502,869	+		Pf1N1B4_2190	0.70	+1.3
2,502,869	+		Pf1N1B4_2190	0.70	-1.7
2,502,869	+		Pf1N1B4_2190	0.70	-0.4
2,502,869	+		Pf1N1B4_2190	0.70	+0.1
2,502,870	-		Pf1N1B4_2190	0.70	+0.4
2,502,870	-		Pf1N1B4_2190	0.70	+0.5
2,502,870	-		Pf1N1B4_2190	0.70	+0.5
2,502,870	-		Pf1N1B4_2190	0.70	+0.2
2,503,076	+				-0.8
2,503,076	+				+1.7
2,503,077	-				-0.9
2,503,151	-		Pf1N1B4_2191	0.12	+1.3
2,503,151	-		Pf1N1B4_2191	0.12	+1.1
2,503,235	+		Pf1N1B4_2191	0.25	-0.7
2,503,235	+		Pf1N1B4_2191	0.25	-1.9
2,503,235	+		Pf1N1B4_2191	0.25	+0.3
2,503,236	-		Pf1N1B4_2191	0.25	-1.5
2,503,236	-		Pf1N1B4_2191	0.25	-0.7
2,503,303	+		Pf1N1B4_2191	0.35	+0.7
2,503,303	+		Pf1N1B4_2191	0.35	-1.3
2,503,303	+		Pf1N1B4_2191	0.35	-0.3
2,503,303	+		Pf1N1B4_2191	0.35	-0.3
2,503,303	+		Pf1N1B4_2191	0.35	-0.1
2,503,303	+		Pf1N1B4_2191	0.35	+0.3
2,503,303	+		Pf1N1B4_2191	0.35	-0.6
2,503,303	+		Pf1N1B4_2191	0.35	-1.9
2,503,303	+		Pf1N1B4_2191	0.35	+0.7
2,503,303	+		Pf1N1B4_2191	0.35	-0.8
2,503,303	+		Pf1N1B4_2191	0.35	-1.3
2,503,303	+		Pf1N1B4_2191	0.35	+1.4
2,503,303	+		Pf1N1B4_2191	0.35	-0.8
2,503,303	+		Pf1N1B4_2191	0.35	-1.0
2,503,304	-		Pf1N1B4_2191	0.35	-1.2
2,503,304	-		Pf1N1B4_2191	0.35	+0.7
2,503,304	-		Pf1N1B4_2191	0.35	-2.4
2,503,304	-		Pf1N1B4_2191	0.35	-0.7
2,503,304	-		Pf1N1B4_2191	0.35	-1.9
2,503,304	-		Pf1N1B4_2191	0.35	-0.9
2,503,304	-		Pf1N1B4_2191	0.35	-0.2
2,503,304	-		Pf1N1B4_2191	0.35	+0.1
2,503,304	-		Pf1N1B4_2191	0.35	-0.2
2,503,304	-		Pf1N1B4_2191	0.35	-0.5
2,503,304	-		Pf1N1B4_2191	0.35	+0.7
2,503,304	-		Pf1N1B4_2191	0.35	-1.1
2,503,304	-		Pf1N1B4_2191	0.35	+0.7
2,503,372	-		Pf1N1B4_2191	0.46	-1.7
2,503,372	-		Pf1N1B4_2191	0.46	+0.7
2,503,372	-		Pf1N1B4_2191	0.46	+0.6
2,503,549	+		Pf1N1B4_2191	0.72	+0.1
2,503,549	+		Pf1N1B4_2191	0.72	+0.7
2,503,550	-				+0.7
2,503,550	-		Pf1N1B4_2191	0.72	-1.1
2,503,550	-		Pf1N1B4_2191	0.72	+0.1
2,503,550	-		Pf1N1B4_2191	0.72	+0.3
2,503,639	+		Pf1N1B4_2191	0.86	-0.9
2,503,639	+		Pf1N1B4_2191	0.86	+0.7
2,503,639	+		Pf1N1B4_2191	0.86	-1.1
2,503,714	-				+1.1
2,503,764	+				-0.7
2,503,765	-				+1.2
2,503,765	-				+0.7
2,503,765	-				-1.8
2,503,765	-				+1.1
2,503,765	-				-0.9
2,503,823	-				+1.3
2,503,837	+				-0.3
2,503,837	+				-1.2
2,503,837	+				+0.3
2,503,837	+				+0.7
2,503,838	-				-0.3
2,503,888	+				+0.3
2,503,888	+				-0.1
2,503,888	+				+0.1
2,503,889	-				+1.2
2,503,891	+				+0.2
2,503,891	+				+0.6
2,503,891	+				+0.2
2,503,892	-				-0.2
2,503,892	-				-1.1
2,503,892	-				+1.4
2,503,892	-				-1.9
2,503,920	+				-0.1
2,503,920	+				+0.7
2,503,921	-				-0.5
2,503,921	-				-0.6
2,503,921	-				-0.5
2,503,949	-				+1.1
2,503,949	-				+0.1
2,503,949	-				-1.1
2,503,949	-				-2.3
2,503,949	-				-0.5
2,503,949	-				+0.3
2,503,952	+				+0.2
2,503,952	+				+0.5
2,503,952	+				-0.7
2,503,952	+				-0.7
2,503,953	-				-2.3
2,503,953	-				-0.9
2,503,953	-				-0.0
2,503,953	-				-0.5
2,503,953	-				-1.7
2,503,966	+				+0.1
2,503,966	+				+0.1
2,503,967	-				-0.7
2,503,967	-				+1.7
2,503,967	-				+0.1
2,504,226	+		Pf1N1B4_2192	0.26	-0.3
2,504,226	+		Pf1N1B4_2192	0.26	-0.2
2,504,226	+		Pf1N1B4_2192	0.26	+0.9
2,504,226	+		Pf1N1B4_2192	0.26	-0.5
2,504,226	+		Pf1N1B4_2192	0.26	+0.4
2,504,226	+		Pf1N1B4_2192	0.26	-0.8
2,504,227	-		Pf1N1B4_2192	0.27	+0.8
2,504,227	-		Pf1N1B4_2192	0.27	-0.5
2,504,227	-		Pf1N1B4_2192	0.27	+1.7
2,504,290	+		Pf1N1B4_2192	0.32	+2.2
2,504,290	+		Pf1N1B4_2192	0.32	-0.3
2,504,290	+		Pf1N1B4_2192	0.32	+0.4
2,504,290	+		Pf1N1B4_2192	0.32	-0.1
2,504,290	+		Pf1N1B4_2192	0.32	-0.0
2,504,291	-		Pf1N1B4_2192	0.32	-0.7
2,504,291	-		Pf1N1B4_2192	0.32	+1.7
2,504,291	-		Pf1N1B4_2192	0.32	-1.5
2,504,291	-		Pf1N1B4_2192	0.32	-0.9
2,504,562	-		Pf1N1B4_2192	0.56	+1.1
2,504,720	+		Pf1N1B4_2192	0.70	-0.7
2,504,721	-		Pf1N1B4_2192	0.70	+1.3
2,504,721	-		Pf1N1B4_2192	0.70	-1.7