Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1159

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1156 and Pf1N1B4_1157 are separated by 42 nucleotidesPf1N1B4_1157 and Pf1N1B4_1158 are separated by 12 nucleotidesPf1N1B4_1158 and Pf1N1B4_1159 are separated by 142 nucleotidesPf1N1B4_1159 and Pf1N1B4_1160 are separated by 3 nucleotidesPf1N1B4_1160 and Pf1N1B4_1161 are separated by 159 nucleotides Pf1N1B4_1156 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 1,303,300 to 1,305,405 _1156 Pf1N1B4_1157 - hypothetical protein, at 1,305,448 to 1,305,588 _1157 Pf1N1B4_1158 - SSU ribosomal protein S15p (S13e), at 1,305,601 to 1,305,870 _1158 Pf1N1B4_1159 - tRNA pseudouridine synthase B (EC 4.2.1.70), at 1,306,013 to 1,306,930 _1159 Pf1N1B4_1160 - Ribosome-binding factor A, at 1,306,934 to 1,307,335 _1160 Pf1N1B4_1161 - Translation initiation factor 2, at 1,307,495 to 1,310,020 _1161 Position (kb) 1306 1307Strain fitness (log2 ratio) -1 0 1at 1306.345 kb on - strand, within Pf1N1B4_1159at 1306.396 kb on - strand, within Pf1N1B4_1159at 1306.396 kb on - strand, within Pf1N1B4_1159at 1306.396 kb on - strand, within Pf1N1B4_1159at 1306.396 kb on - strand, within Pf1N1B4_1159at 1306.396 kb on - strand, within Pf1N1B4_1159at 1306.469 kb on - strand, within Pf1N1B4_1159at 1306.497 kb on - strand, within Pf1N1B4_1159at 1306.521 kb on + strand, within Pf1N1B4_1159at 1306.554 kb on + strand, within Pf1N1B4_1159at 1306.729 kb on - strand, within Pf1N1B4_1159at 1306.912 kb on + strandat 1306.913 kb on - strandat 1306.935 kb on + strandat 1307.351 kb on - strandat 1307.351 kb on - strandat 1307.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,306,345 - Pf1N1B4_1159 0.36 -0.1
1,306,396 - Pf1N1B4_1159 0.42 -0.5
1,306,396 - Pf1N1B4_1159 0.42 +0.1
1,306,396 - Pf1N1B4_1159 0.42 -0.7
1,306,396 - Pf1N1B4_1159 0.42 -0.6
1,306,396 - Pf1N1B4_1159 0.42 +0.5
1,306,469 - Pf1N1B4_1159 0.50 -0.5
1,306,497 - Pf1N1B4_1159 0.53 -1.5
1,306,521 + Pf1N1B4_1159 0.55 -0.5
1,306,554 + Pf1N1B4_1159 0.59 -0.3
1,306,729 - Pf1N1B4_1159 0.78 +0.3
1,306,912 + -1.7
1,306,913 - -1.3
1,306,935 + -0.3
1,307,351 - -0.8
1,307,351 - -0.4
1,307,497 - -0.3

Or see this region's nucleotide sequence