Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02510

Experiment: Dextrin from potato starch 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02515 and HMPREF1058_RS02510 are separated by 64 nucleotidesHMPREF1058_RS02510 and HMPREF1058_RS02505 are separated by 27 nucleotidesHMPREF1058_RS02505 and HMPREF1058_RS02500 are separated by 79 nucleotides HMPREF1058_RS02515: HMPREF1058_RS02515 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 165,457 to 166,674 _RS02515 HMPREF1058_RS02510: HMPREF1058_RS02510 - DUF2027 domain-containing protein, at 166,739 to 167,827 _RS02510 HMPREF1058_RS02505: HMPREF1058_RS02505 - PaaI family thioesterase, at 167,855 to 168,265 _RS02505 HMPREF1058_RS02500: HMPREF1058_RS02500 - histidine decarboxylase, at 168,345 to 168,953 _RS02500 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1 2at 165.739 kb on - strand, within HMPREF1058_RS02515at 165.901 kb on - strand, within HMPREF1058_RS02515at 165.921 kb on - strand, within HMPREF1058_RS02515at 165.946 kb on + strand, within HMPREF1058_RS02515at 166.201 kb on - strand, within HMPREF1058_RS02515at 166.315 kb on - strand, within HMPREF1058_RS02515at 166.342 kb on + strand, within HMPREF1058_RS02515at 166.342 kb on + strand, within HMPREF1058_RS02515at 166.391 kb on + strand, within HMPREF1058_RS02515at 166.392 kb on - strand, within HMPREF1058_RS02515at 166.392 kb on - strand, within HMPREF1058_RS02515at 166.424 kb on - strand, within HMPREF1058_RS02515at 166.492 kb on + strand, within HMPREF1058_RS02515at 166.533 kb on + strand, within HMPREF1058_RS02515at 166.746 kb on + strandat 166.753 kb on + strandat 166.753 kb on + strandat 166.754 kb on - strandat 166.754 kb on - strandat 166.895 kb on - strand, within HMPREF1058_RS02510at 166.897 kb on + strand, within HMPREF1058_RS02510at 166.897 kb on + strand, within HMPREF1058_RS02510at 167.012 kb on + strand, within HMPREF1058_RS02510at 167.087 kb on - strand, within HMPREF1058_RS02510at 167.087 kb on - strand, within HMPREF1058_RS02510at 167.111 kb on + strand, within HMPREF1058_RS02510at 167.111 kb on + strand, within HMPREF1058_RS02510at 167.141 kb on + strand, within HMPREF1058_RS02510at 167.151 kb on - strand, within HMPREF1058_RS02510at 167.167 kb on + strand, within HMPREF1058_RS02510at 167.341 kb on - strand, within HMPREF1058_RS02510at 167.344 kb on + strand, within HMPREF1058_RS02510at 167.368 kb on + strand, within HMPREF1058_RS02510at 167.368 kb on + strand, within HMPREF1058_RS02510at 167.384 kb on - strand, within HMPREF1058_RS02510at 167.411 kb on + strand, within HMPREF1058_RS02510at 167.412 kb on - strand, within HMPREF1058_RS02510at 167.418 kb on + strand, within HMPREF1058_RS02510at 167.419 kb on - strand, within HMPREF1058_RS02510at 167.469 kb on + strand, within HMPREF1058_RS02510at 167.470 kb on - strand, within HMPREF1058_RS02510at 167.747 kb on + strandat 167.748 kb on - strandat 167.748 kb on - strandat 167.755 kb on + strandat 167.792 kb on + strandat 167.819 kb on - strandat 167.842 kb on + strandat 167.844 kb on + strandat 167.897 kb on - strand, within HMPREF1058_RS02505at 167.926 kb on - strand, within HMPREF1058_RS02505at 167.988 kb on + strand, within HMPREF1058_RS02505at 167.989 kb on - strand, within HMPREF1058_RS02505at 167.989 kb on - strand, within HMPREF1058_RS02505at 168.010 kb on + strand, within HMPREF1058_RS02505at 168.011 kb on - strand, within HMPREF1058_RS02505at 168.011 kb on - strand, within HMPREF1058_RS02505at 168.085 kb on + strand, within HMPREF1058_RS02505at 168.103 kb on + strand, within HMPREF1058_RS02505at 168.120 kb on - strandat 168.120 kb on - strand, within HMPREF1058_RS02505at 168.142 kb on + strand, within HMPREF1058_RS02505at 168.207 kb on + strand, within HMPREF1058_RS02505at 168.208 kb on - strand, within HMPREF1058_RS02505at 168.208 kb on - strand, within HMPREF1058_RS02505at 168.208 kb on - strand, within HMPREF1058_RS02505at 168.211 kb on + strand, within HMPREF1058_RS02505at 168.264 kb on - strandat 168.268 kb on + strandat 168.269 kb on - strandat 168.270 kb on + strandat 168.274 kb on - strandat 168.480 kb on - strand, within HMPREF1058_RS02500at 168.480 kb on - strand, within HMPREF1058_RS02500at 168.532 kb on + strand, within HMPREF1058_RS02500at 168.532 kb on + strand, within HMPREF1058_RS02500at 168.557 kb on + strand, within HMPREF1058_RS02500at 168.618 kb on - strand, within HMPREF1058_RS02500at 168.633 kb on + strand, within HMPREF1058_RS02500at 168.724 kb on + strand, within HMPREF1058_RS02500at 168.725 kb on - strand, within HMPREF1058_RS02500at 168.725 kb on - strand, within HMPREF1058_RS02500at 168.726 kb on + strand, within HMPREF1058_RS02500at 168.726 kb on + strand, within HMPREF1058_RS02500

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 5 mg/ml (C)
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165,739 - HMPREF1058_RS02515 0.23 -0.1
165,901 - HMPREF1058_RS02515 0.36 -0.3
165,921 - HMPREF1058_RS02515 0.38 -0.6
165,946 + HMPREF1058_RS02515 0.40 +0.6
166,201 - HMPREF1058_RS02515 0.61 +0.3
166,315 - HMPREF1058_RS02515 0.70 -0.3
166,342 + HMPREF1058_RS02515 0.73 +0.1
166,342 + HMPREF1058_RS02515 0.73 +0.3
166,391 + HMPREF1058_RS02515 0.77 +0.1
166,392 - HMPREF1058_RS02515 0.77 +0.5
166,392 - HMPREF1058_RS02515 0.77 +0.3
166,424 - HMPREF1058_RS02515 0.79 +0.7
166,492 + HMPREF1058_RS02515 0.85 +0.5
166,533 + HMPREF1058_RS02515 0.88 -1.6
166,746 + -0.7
166,753 + +0.6
166,753 + +0.0
166,754 - -1.6
166,754 - -0.4
166,895 - HMPREF1058_RS02510 0.14 -0.4
166,897 + HMPREF1058_RS02510 0.15 -0.3
166,897 + HMPREF1058_RS02510 0.15 +0.5
167,012 + HMPREF1058_RS02510 0.25 +2.0
167,087 - HMPREF1058_RS02510 0.32 +0.7
167,087 - HMPREF1058_RS02510 0.32 -0.3
167,111 + HMPREF1058_RS02510 0.34 -0.0
167,111 + HMPREF1058_RS02510 0.34 +0.8
167,141 + HMPREF1058_RS02510 0.37 +0.2
167,151 - HMPREF1058_RS02510 0.38 +0.3
167,167 + HMPREF1058_RS02510 0.39 -0.4
167,341 - HMPREF1058_RS02510 0.55 -0.1
167,344 + HMPREF1058_RS02510 0.56 -0.3
167,368 + HMPREF1058_RS02510 0.58 -0.7
167,368 + HMPREF1058_RS02510 0.58 +0.8
167,384 - HMPREF1058_RS02510 0.59 +0.4
167,411 + HMPREF1058_RS02510 0.62 -0.3
167,412 - HMPREF1058_RS02510 0.62 +0.1
167,418 + HMPREF1058_RS02510 0.62 +0.3
167,419 - HMPREF1058_RS02510 0.62 -0.5
167,469 + HMPREF1058_RS02510 0.67 -0.5
167,470 - HMPREF1058_RS02510 0.67 -0.2
167,747 + +0.8
167,748 - +0.0
167,748 - +1.7
167,755 + +0.7
167,792 + -0.0
167,819 - +0.5
167,842 + -0.2
167,844 + -0.1
167,897 - HMPREF1058_RS02505 0.10 +0.7
167,926 - HMPREF1058_RS02505 0.17 -0.2
167,988 + HMPREF1058_RS02505 0.32 -0.1
167,989 - HMPREF1058_RS02505 0.33 -0.6
167,989 - HMPREF1058_RS02505 0.33 +0.0
168,010 + HMPREF1058_RS02505 0.38 +0.2
168,011 - HMPREF1058_RS02505 0.38 +0.9
168,011 - HMPREF1058_RS02505 0.38 -0.5
168,085 + HMPREF1058_RS02505 0.56 -0.8
168,103 + HMPREF1058_RS02505 0.60 -0.1
168,120 - +1.7
168,120 - HMPREF1058_RS02505 0.64 -0.2
168,142 + HMPREF1058_RS02505 0.70 -0.2
168,207 + HMPREF1058_RS02505 0.86 -0.0
168,208 - HMPREF1058_RS02505 0.86 -0.1
168,208 - HMPREF1058_RS02505 0.86 -0.2
168,208 - HMPREF1058_RS02505 0.86 +0.4
168,211 + HMPREF1058_RS02505 0.87 -2.3
168,264 - +0.2
168,268 + +0.3
168,269 - -0.7
168,270 + -0.2
168,274 - +0.3
168,480 - HMPREF1058_RS02500 0.22 +0.2
168,480 - HMPREF1058_RS02500 0.22 -1.2
168,532 + HMPREF1058_RS02500 0.31 -0.1
168,532 + HMPREF1058_RS02500 0.31 -0.1
168,557 + HMPREF1058_RS02500 0.35 -1.8
168,618 - HMPREF1058_RS02500 0.45 +0.1
168,633 + HMPREF1058_RS02500 0.47 -0.1
168,724 + HMPREF1058_RS02500 0.62 +0.3
168,725 - HMPREF1058_RS02500 0.62 -0.3
168,725 - HMPREF1058_RS02500 0.62 +0.3
168,726 + HMPREF1058_RS02500 0.63 -0.3
168,726 + HMPREF1058_RS02500 0.63 +0.3

Or see this region's nucleotide sequence