Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03341

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03339 and CCNA_03340 are separated by 7 nucleotidesCCNA_03340 and CCNA_03341 are separated by 4 nucleotidesCCNA_03341 and CCNA_03342 are separated by 114 nucleotidesCCNA_03342 and CCNA_03343 overlap by 4 nucleotides CCNA_03339: CCNA_03339 - TolA protein, at 3,520,731 to 3,521,543 _03339 CCNA_03340: CCNA_03340 - TolR protein, at 3,521,551 to 3,522,069 _03340 CCNA_03341: CCNA_03341 - TolQ protein, at 3,522,074 to 3,522,772 _03341 CCNA_03342: CCNA_03342 - short-chain acyl-CoA hydrolase, at 3,522,887 to 3,523,330 _03342 CCNA_03343: CCNA_03343 - FtsW related protein, at 3,523,327 to 3,524,193 _03343 Position (kb) 3522 3523Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3521.509 kb on + strandat 3521.574 kb on - strandat 3521.587 kb on - strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.095 kb on + strandat 3522.785 kb on + strandat 3522.793 kb on - strandat 3522.793 kb on - strandat 3522.793 kb on - strandat 3522.793 kb on - strandat 3522.803 kb on - strandat 3522.804 kb on + strandat 3522.804 kb on + strandat 3522.804 kb on + strandat 3522.804 kb on + strandat 3522.809 kb on + strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.824 kb on - strandat 3522.893 kb on - strandat 3522.918 kb on + strandat 3522.918 kb on + strandat 3522.920 kb on - strandat 3522.932 kb on + strand, within CCNA_03342at 3522.960 kb on - strand, within CCNA_03342at 3522.964 kb on + strand, within CCNA_03342at 3522.964 kb on + strand, within CCNA_03342at 3522.964 kb on + strand, within CCNA_03342at 3522.972 kb on - strand, within CCNA_03342at 3522.972 kb on - strand, within CCNA_03342at 3522.972 kb on - strand, within CCNA_03342at 3522.972 kb on - strand, within CCNA_03342at 3522.990 kb on + strand, within CCNA_03342at 3522.998 kb on - strand, within CCNA_03342at 3523.003 kb on + strand, within CCNA_03342at 3523.003 kb on - strand, within CCNA_03342at 3523.011 kb on - strand, within CCNA_03342at 3523.056 kb on + strand, within CCNA_03342at 3523.075 kb on - strand, within CCNA_03342at 3523.082 kb on + strand, within CCNA_03342at 3523.112 kb on + strand, within CCNA_03342at 3523.112 kb on + strand, within CCNA_03342at 3523.112 kb on + strand, within CCNA_03342at 3523.112 kb on + strand, within CCNA_03342at 3523.112 kb on + strand, within CCNA_03342at 3523.120 kb on - strand, within CCNA_03342at 3523.224 kb on + strand, within CCNA_03342at 3523.317 kb on - strandat 3523.337 kb on + strandat 3523.342 kb on + strandat 3523.345 kb on - strandat 3523.345 kb on - strandat 3523.375 kb on - strandat 3523.381 kb on - strandat 3523.385 kb on + strandat 3523.390 kb on + strandat 3523.414 kb on + strand, within CCNA_03343at 3523.422 kb on - strand, within CCNA_03343at 3523.422 kb on - strand, within CCNA_03343at 3523.483 kb on + strand, within CCNA_03343at 3523.510 kb on - strand, within CCNA_03343at 3523.611 kb on - strand, within CCNA_03343at 3523.611 kb on - strand, within CCNA_03343at 3523.627 kb on - strand, within CCNA_03343at 3523.632 kb on - strand, within CCNA_03343at 3523.647 kb on + strand, within CCNA_03343at 3523.650 kb on + strand, within CCNA_03343at 3523.697 kb on - strand, within CCNA_03343at 3523.701 kb on - strand, within CCNA_03343at 3523.733 kb on + strand, within CCNA_03343at 3523.751 kb on + strand, within CCNA_03343at 3523.751 kb on + strand, within CCNA_03343at 3523.751 kb on + strand, within CCNA_03343at 3523.759 kb on - strand, within CCNA_03343at 3523.759 kb on - strand, within CCNA_03343at 3523.759 kb on - strand, within CCNA_03343at 3523.764 kb on - strand, within CCNA_03343

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,521,509 + -1.3
3,521,574 - +0.4
3,521,587 - -1.2
3,522,072 + -1.7
3,522,072 + -0.6
3,522,072 + -0.5
3,522,072 + -2.0
3,522,072 + -1.6
3,522,072 + +1.9
3,522,072 + -0.6
3,522,072 + -0.8
3,522,072 + +0.4
3,522,072 + -2.5
3,522,072 + -0.8
3,522,080 - +1.2
3,522,080 - +2.1
3,522,080 - +1.6
3,522,080 - +0.8
3,522,080 - +1.4
3,522,080 - +1.5
3,522,080 - +1.5
3,522,080 - +0.8
3,522,080 - +1.5
3,522,080 - +1.1
3,522,080 - +1.0
3,522,095 + -2.7
3,522,785 + -0.7
3,522,793 - +0.3
3,522,793 - +0.2
3,522,793 - +0.7
3,522,793 - +0.0
3,522,803 - +0.7
3,522,804 + -1.7
3,522,804 + -0.6
3,522,804 + -2.0
3,522,804 + -1.3
3,522,809 + -0.7
3,522,812 - -1.2
3,522,812 - -0.5
3,522,812 - -0.9
3,522,812 - -0.1
3,522,812 - +0.0
3,522,812 - +0.4
3,522,812 - +0.5
3,522,812 - +0.8
3,522,812 - -1.3
3,522,812 - +1.4
3,522,812 - -0.3
3,522,812 - +0.2
3,522,812 - -1.2
3,522,824 - +3.0
3,522,893 - +0.8
3,522,918 + -1.2
3,522,918 + +0.1
3,522,920 - +0.0
3,522,932 + CCNA_03342 0.10 +0.2
3,522,960 - CCNA_03342 0.16 +0.3
3,522,964 + CCNA_03342 0.17 -0.5
3,522,964 + CCNA_03342 0.17 +0.1
3,522,964 + CCNA_03342 0.17 -0.2
3,522,972 - CCNA_03342 0.19 +0.5
3,522,972 - CCNA_03342 0.19 +0.1
3,522,972 - CCNA_03342 0.19 -0.3
3,522,972 - CCNA_03342 0.19 +0.2
3,522,990 + CCNA_03342 0.23 -0.4
3,522,998 - CCNA_03342 0.25 +0.7
3,523,003 + CCNA_03342 0.26 -1.5
3,523,003 - CCNA_03342 0.26 -0.5
3,523,011 - CCNA_03342 0.28 +0.6
3,523,056 + CCNA_03342 0.38 +0.6
3,523,075 - CCNA_03342 0.42 +1.4
3,523,082 + CCNA_03342 0.44 -1.4
3,523,112 + CCNA_03342 0.51 -0.6
3,523,112 + CCNA_03342 0.51 -0.2
3,523,112 + CCNA_03342 0.51 -1.1
3,523,112 + CCNA_03342 0.51 +0.4
3,523,112 + CCNA_03342 0.51 -1.0
3,523,120 - CCNA_03342 0.52 +0.7
3,523,224 + CCNA_03342 0.76 -2.7
3,523,317 - +0.1
3,523,337 + -1.6
3,523,342 + -1.2
3,523,345 - +0.4
3,523,345 - +0.7
3,523,375 - +0.2
3,523,381 - -0.3
3,523,385 + -1.7
3,523,390 + -1.6
3,523,414 + CCNA_03343 0.10 -2.7
3,523,422 - CCNA_03343 0.11 +0.7
3,523,422 - CCNA_03343 0.11 +0.8
3,523,483 + CCNA_03343 0.18 -2.6
3,523,510 - CCNA_03343 0.21 +0.8
3,523,611 - CCNA_03343 0.33 -0.4
3,523,611 - CCNA_03343 0.33 +0.1
3,523,627 - CCNA_03343 0.35 +0.0
3,523,632 - CCNA_03343 0.35 +1.3
3,523,647 + CCNA_03343 0.37 -3.0
3,523,650 + CCNA_03343 0.37 +1.0
3,523,697 - CCNA_03343 0.43 +0.6
3,523,701 - CCNA_03343 0.43 +0.5
3,523,733 + CCNA_03343 0.47 -0.6
3,523,751 + CCNA_03343 0.49 +0.8
3,523,751 + CCNA_03343 0.49 -2.2
3,523,751 + CCNA_03343 0.49 -0.1
3,523,759 - CCNA_03343 0.50 +1.8
3,523,759 - CCNA_03343 0.50 +1.3
3,523,759 - CCNA_03343 0.50 -0.6
3,523,764 - CCNA_03343 0.50 -1.0

Or see this region's nucleotide sequence