Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03339 and CCNA_03340 are separated by 7 nucleotides CCNA_03340 and CCNA_03341 are separated by 4 nucleotides CCNA_03341 and CCNA_03342 are separated by 114 nucleotides CCNA_03342 and CCNA_03343 overlap by 4 nucleotides
CCNA_03339: CCNA_03339 - TolA protein, at 3,520,731 to 3,521,543
_03339
CCNA_03340: CCNA_03340 - TolR protein, at 3,521,551 to 3,522,069
_03340
CCNA_03341: CCNA_03341 - TolQ protein, at 3,522,074 to 3,522,772
_03341
CCNA_03342: CCNA_03342 - short-chain acyl-CoA hydrolase, at 3,522,887 to 3,523,330
_03342
CCNA_03343: CCNA_03343 - FtsW related protein, at 3,523,327 to 3,524,193
_03343
Position (kb)
3522
3523 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3521.509 kb on + strand at 3521.574 kb on - strand at 3521.587 kb on - strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.095 kb on + strand at 3522.785 kb on + strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.803 kb on - strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.809 kb on + strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.824 kb on - strand at 3522.893 kb on - strand at 3522.918 kb on + strand at 3522.918 kb on + strand at 3522.920 kb on - strand at 3522.932 kb on + strand, within CCNA_03342 at 3522.960 kb on - strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.990 kb on + strand, within CCNA_03342 at 3522.998 kb on - strand, within CCNA_03342 at 3523.003 kb on + strand, within CCNA_03342 at 3523.003 kb on - strand, within CCNA_03342 at 3523.011 kb on - strand, within CCNA_03342 at 3523.056 kb on + strand, within CCNA_03342 at 3523.075 kb on - strand, within CCNA_03342 at 3523.082 kb on + strand, within CCNA_03342 at 3523.112 kb on + strand, within CCNA_03342 at 3523.112 kb on + strand, within CCNA_03342 at 3523.112 kb on + strand, within CCNA_03342 at 3523.112 kb on + strand, within CCNA_03342 at 3523.112 kb on + strand, within CCNA_03342 at 3523.120 kb on - strand, within CCNA_03342 at 3523.224 kb on + strand, within CCNA_03342 at 3523.317 kb on - strand at 3523.337 kb on + strand at 3523.342 kb on + strand at 3523.345 kb on - strand at 3523.345 kb on - strand at 3523.375 kb on - strand at 3523.381 kb on - strand at 3523.385 kb on + strand at 3523.390 kb on + strand at 3523.414 kb on + strand, within CCNA_03343 at 3523.422 kb on - strand, within CCNA_03343 at 3523.422 kb on - strand, within CCNA_03343 at 3523.483 kb on + strand, within CCNA_03343 at 3523.510 kb on - strand, within CCNA_03343 at 3523.611 kb on - strand, within CCNA_03343 at 3523.611 kb on - strand, within CCNA_03343 at 3523.627 kb on - strand, within CCNA_03343 at 3523.632 kb on - strand, within CCNA_03343 at 3523.647 kb on + strand, within CCNA_03343 at 3523.650 kb on + strand, within CCNA_03343 at 3523.697 kb on - strand, within CCNA_03343 at 3523.701 kb on - strand, within CCNA_03343 at 3523.733 kb on + strand, within CCNA_03343 at 3523.751 kb on + strand, within CCNA_03343 at 3523.751 kb on + strand, within CCNA_03343 at 3523.751 kb on + strand, within CCNA_03343 at 3523.759 kb on - strand, within CCNA_03343 at 3523.759 kb on - strand, within CCNA_03343 at 3523.759 kb on - strand, within CCNA_03343 at 3523.764 kb on - strand, within CCNA_03343
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 3,521,509 + -1.3 3,521,574 - +0.4 3,521,587 - -1.2 3,522,072 + -1.7 3,522,072 + -0.6 3,522,072 + -0.5 3,522,072 + -2.0 3,522,072 + -1.6 3,522,072 + +1.9 3,522,072 + -0.6 3,522,072 + -0.8 3,522,072 + +0.4 3,522,072 + -2.5 3,522,072 + -0.8 3,522,080 - +1.2 3,522,080 - +2.1 3,522,080 - +1.6 3,522,080 - +0.8 3,522,080 - +1.4 3,522,080 - +1.5 3,522,080 - +1.5 3,522,080 - +0.8 3,522,080 - +1.5 3,522,080 - +1.1 3,522,080 - +1.0 3,522,095 + -2.7 3,522,785 + -0.7 3,522,793 - +0.3 3,522,793 - +0.2 3,522,793 - +0.7 3,522,793 - +0.0 3,522,803 - +0.7 3,522,804 + -1.7 3,522,804 + -0.6 3,522,804 + -2.0 3,522,804 + -1.3 3,522,809 + -0.7 3,522,812 - -1.2 3,522,812 - -0.5 3,522,812 - -0.9 3,522,812 - -0.1 3,522,812 - +0.0 3,522,812 - +0.4 3,522,812 - +0.5 3,522,812 - +0.8 3,522,812 - -1.3 3,522,812 - +1.4 3,522,812 - -0.3 3,522,812 - +0.2 3,522,812 - -1.2 3,522,824 - +3.0 3,522,893 - +0.8 3,522,918 + -1.2 3,522,918 + +0.1 3,522,920 - +0.0 3,522,932 + CCNA_03342 0.10 +0.2 3,522,960 - CCNA_03342 0.16 +0.3 3,522,964 + CCNA_03342 0.17 -0.5 3,522,964 + CCNA_03342 0.17 +0.1 3,522,964 + CCNA_03342 0.17 -0.2 3,522,972 - CCNA_03342 0.19 +0.5 3,522,972 - CCNA_03342 0.19 +0.1 3,522,972 - CCNA_03342 0.19 -0.3 3,522,972 - CCNA_03342 0.19 +0.2 3,522,990 + CCNA_03342 0.23 -0.4 3,522,998 - CCNA_03342 0.25 +0.7 3,523,003 + CCNA_03342 0.26 -1.5 3,523,003 - CCNA_03342 0.26 -0.5 3,523,011 - CCNA_03342 0.28 +0.6 3,523,056 + CCNA_03342 0.38 +0.6 3,523,075 - CCNA_03342 0.42 +1.4 3,523,082 + CCNA_03342 0.44 -1.4 3,523,112 + CCNA_03342 0.51 -0.6 3,523,112 + CCNA_03342 0.51 -0.2 3,523,112 + CCNA_03342 0.51 -1.1 3,523,112 + CCNA_03342 0.51 +0.4 3,523,112 + CCNA_03342 0.51 -1.0 3,523,120 - CCNA_03342 0.52 +0.7 3,523,224 + CCNA_03342 0.76 -2.7 3,523,317 - +0.1 3,523,337 + -1.6 3,523,342 + -1.2 3,523,345 - +0.4 3,523,345 - +0.7 3,523,375 - +0.2 3,523,381 - -0.3 3,523,385 + -1.7 3,523,390 + -1.6 3,523,414 + CCNA_03343 0.10 -2.7 3,523,422 - CCNA_03343 0.11 +0.7 3,523,422 - CCNA_03343 0.11 +0.8 3,523,483 + CCNA_03343 0.18 -2.6 3,523,510 - CCNA_03343 0.21 +0.8 3,523,611 - CCNA_03343 0.33 -0.4 3,523,611 - CCNA_03343 0.33 +0.1 3,523,627 - CCNA_03343 0.35 +0.0 3,523,632 - CCNA_03343 0.35 +1.3 3,523,647 + CCNA_03343 0.37 -3.0 3,523,650 + CCNA_03343 0.37 +1.0 3,523,697 - CCNA_03343 0.43 +0.6 3,523,701 - CCNA_03343 0.43 +0.5 3,523,733 + CCNA_03343 0.47 -0.6 3,523,751 + CCNA_03343 0.49 +0.8 3,523,751 + CCNA_03343 0.49 -2.2 3,523,751 + CCNA_03343 0.49 -0.1 3,523,759 - CCNA_03343 0.50 +1.8 3,523,759 - CCNA_03343 0.50 +1.3 3,523,759 - CCNA_03343 0.50 -0.6 3,523,764 - CCNA_03343 0.50 -1.0
Or see this region's nucleotide sequence