Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03339

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03338 and CCNA_03339 overlap by 4 nucleotidesCCNA_03339 and CCNA_03340 are separated by 7 nucleotidesCCNA_03340 and CCNA_03341 are separated by 4 nucleotides CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734 _03338 CCNA_03339: CCNA_03339 - TolA protein, at 3,520,731 to 3,521,543 _03339 CCNA_03340: CCNA_03340 - TolR protein, at 3,521,551 to 3,522,069 _03340 CCNA_03341: CCNA_03341 - TolQ protein, at 3,522,074 to 3,522,772 _03341 Position (kb) 3520 3521 3522Strain fitness (log2 ratio) -2 -1 0 1 2at 3520.688 kb on + strandat 3520.688 kb on + strandat 3520.696 kb on - strandat 3520.696 kb on - strandat 3520.696 kb on - strandat 3521.509 kb on + strandat 3521.574 kb on - strandat 3521.587 kb on - strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.095 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,520,688 + -1.7
3,520,688 + +2.1
3,520,696 - -0.1
3,520,696 - -0.2
3,520,696 - +1.7
3,521,509 + -1.3
3,521,574 - +0.4
3,521,587 - -1.2
3,522,072 + -1.7
3,522,072 + -0.6
3,522,072 + -0.5
3,522,072 + -2.0
3,522,072 + -1.6
3,522,072 + +1.9
3,522,072 + -0.6
3,522,072 + -0.8
3,522,072 + +0.4
3,522,072 + -2.5
3,522,072 + -0.8
3,522,080 - +1.2
3,522,080 - +2.1
3,522,080 - +1.6
3,522,080 - +0.8
3,522,080 - +1.4
3,522,080 - +1.5
3,522,080 - +1.5
3,522,080 - +0.8
3,522,080 - +1.5
3,522,080 - +1.1
3,522,080 - +1.0
3,522,095 + -2.7

Or see this region's nucleotide sequence