Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03338

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03336 and CCNA_03337 are separated by 77 nucleotidesCCNA_03337 and CCNA_03338 are separated by 196 nucleotidesCCNA_03338 and CCNA_03339 overlap by 4 nucleotidesCCNA_03339 and CCNA_03340 are separated by 7 nucleotides CCNA_03336: CCNA_03336 - Tol system periplasmic component YbgF, at 3,517,708 to 3,518,562 _03336 CCNA_03337: CCNA_03337 - peptidoglycan-associated lipoprotein pal, at 3,518,640 to 3,519,206 _03337 CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734 _03338 CCNA_03339: CCNA_03339 - TolA protein, at 3,520,731 to 3,521,543 _03339 CCNA_03340: CCNA_03340 - TolR protein, at 3,521,551 to 3,522,069 _03340 Position (kb) 3519 3520 3521Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3518.627 kb on + strandat 3518.627 kb on + strandat 3518.635 kb on - strandat 3518.637 kb on + strandat 3519.227 kb on + strandat 3519.227 kb on + strandat 3519.227 kb on + strandat 3519.235 kb on - strandat 3519.235 kb on - strandat 3519.235 kb on - strandat 3519.235 kb on - strandat 3519.235 kb on - strandat 3519.240 kb on - strandat 3519.249 kb on + strandat 3519.252 kb on - strandat 3519.256 kb on + strandat 3519.352 kb on - strandat 3519.375 kb on + strandat 3519.375 kb on + strandat 3519.383 kb on - strandat 3519.383 kb on - strandat 3519.394 kb on + strandat 3519.406 kb on + strandat 3519.406 kb on + strandat 3519.406 kb on + strandat 3519.413 kb on - strandat 3520.688 kb on + strandat 3520.688 kb on + strandat 3520.696 kb on - strandat 3520.696 kb on - strandat 3520.696 kb on - strandat 3521.509 kb on + strandat 3521.574 kb on - strandat 3521.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,518,627 + -2.6
3,518,627 + -1.3
3,518,635 - +2.0
3,518,637 + -0.2
3,519,227 + +0.4
3,519,227 + -0.0
3,519,227 + -1.4
3,519,235 - +1.7
3,519,235 - -0.7
3,519,235 - +1.2
3,519,235 - +0.7
3,519,235 - +0.7
3,519,240 - +0.9
3,519,249 + -2.6
3,519,252 - +1.5
3,519,256 + -2.6
3,519,352 - +1.3
3,519,375 + -1.0
3,519,375 + -2.9
3,519,383 - +0.6
3,519,383 - +0.8
3,519,394 + -1.6
3,519,406 + -3.0
3,519,406 + -3.2
3,519,406 + -1.6
3,519,413 - +0.5
3,520,688 + -1.7
3,520,688 + +2.1
3,520,696 - -0.1
3,520,696 - -0.2
3,520,696 - +1.7
3,521,509 + -1.3
3,521,574 - +0.4
3,521,587 - -1.2

Or see this region's nucleotide sequence