Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03336 and CCNA_03337 are separated by 77 nucleotides CCNA_03337 and CCNA_03338 are separated by 196 nucleotides CCNA_03338 and CCNA_03339 overlap by 4 nucleotides CCNA_03339 and CCNA_03340 are separated by 7 nucleotides
CCNA_03336: CCNA_03336 - Tol system periplasmic component YbgF, at 3,517,708 to 3,518,562
_03336
CCNA_03337: CCNA_03337 - peptidoglycan-associated lipoprotein pal, at 3,518,640 to 3,519,206
_03337
CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734
_03338
CCNA_03339: CCNA_03339 - TolA protein, at 3,520,731 to 3,521,543
_03339
CCNA_03340: CCNA_03340 - TolR protein, at 3,521,551 to 3,522,069
_03340
Position (kb)
3519
3520
3521 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3518.627 kb on + strand at 3518.627 kb on + strand at 3518.635 kb on - strand at 3518.637 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.240 kb on - strand at 3519.249 kb on + strand at 3519.252 kb on - strand at 3519.256 kb on + strand at 3519.352 kb on - strand at 3519.375 kb on + strand at 3519.375 kb on + strand at 3519.383 kb on - strand at 3519.383 kb on - strand at 3519.394 kb on + strand at 3519.406 kb on + strand at 3519.406 kb on + strand at 3519.406 kb on + strand at 3519.413 kb on - strand at 3520.688 kb on + strand at 3520.688 kb on + strand at 3520.696 kb on - strand at 3520.696 kb on - strand at 3520.696 kb on - strand at 3521.509 kb on + strand at 3521.574 kb on - strand at 3521.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 3,518,627 + -2.6 3,518,627 + -1.3 3,518,635 - +2.0 3,518,637 + -0.2 3,519,227 + +0.4 3,519,227 + -0.0 3,519,227 + -1.4 3,519,235 - +1.7 3,519,235 - -0.7 3,519,235 - +1.2 3,519,235 - +0.7 3,519,235 - +0.7 3,519,240 - +0.9 3,519,249 + -2.6 3,519,252 - +1.5 3,519,256 + -2.6 3,519,352 - +1.3 3,519,375 + -1.0 3,519,375 + -2.9 3,519,383 - +0.6 3,519,383 - +0.8 3,519,394 + -1.6 3,519,406 + -3.0 3,519,406 + -3.2 3,519,406 + -1.6 3,519,413 - +0.5 3,520,688 + -1.7 3,520,688 + +2.1 3,520,696 - -0.1 3,520,696 - -0.2 3,520,696 - +1.7 3,521,509 + -1.3 3,521,574 - +0.4 3,521,587 - -1.2
Or see this region's nucleotide sequence