Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02628

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02627 and CCNA_02628 are separated by 218 nucleotidesCCNA_02628 and CCNA_02629 are separated by 151 nucleotides CCNA_02627: CCNA_02627 - aminopeptidase, at 2,776,907 to 2,778,310 _02627 CCNA_02628: CCNA_02628 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,778,529 to 2,779,434 _02628 CCNA_02629: CCNA_02629 - UDP-N-acetylmuramate--alanine ligase, at 2,779,586 to 2,781,007 _02629 Position (kb) 2778 2779 2780Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2777.553 kb on + strand, within CCNA_02627at 2777.571 kb on - strand, within CCNA_02627at 2777.581 kb on + strand, within CCNA_02627at 2777.582 kb on - strand, within CCNA_02627at 2777.605 kb on - strand, within CCNA_02627at 2777.630 kb on - strand, within CCNA_02627at 2777.640 kb on - strand, within CCNA_02627at 2777.669 kb on + strand, within CCNA_02627at 2777.672 kb on + strand, within CCNA_02627at 2777.697 kb on + strand, within CCNA_02627at 2777.705 kb on + strand, within CCNA_02627at 2777.741 kb on + strand, within CCNA_02627at 2777.749 kb on - strand, within CCNA_02627at 2777.810 kb on + strand, within CCNA_02627at 2777.839 kb on + strand, within CCNA_02627at 2777.853 kb on - strand, within CCNA_02627at 2777.862 kb on + strand, within CCNA_02627at 2777.862 kb on + strand, within CCNA_02627at 2777.892 kb on + strand, within CCNA_02627at 2777.892 kb on + strand, within CCNA_02627at 2777.910 kb on + strand, within CCNA_02627at 2777.910 kb on + strand, within CCNA_02627at 2777.910 kb on + strand, within CCNA_02627at 2777.910 kb on + strand, within CCNA_02627at 2777.918 kb on - strand, within CCNA_02627at 2777.918 kb on - strand, within CCNA_02627at 2777.918 kb on - strand, within CCNA_02627at 2777.918 kb on - strand, within CCNA_02627at 2777.918 kb on - strand, within CCNA_02627at 2777.918 kb on - strand, within CCNA_02627at 2777.918 kb on - strand, within CCNA_02627at 2777.918 kb on - strand, within CCNA_02627at 2777.933 kb on - strand, within CCNA_02627at 2777.966 kb on + strand, within CCNA_02627at 2777.974 kb on - strand, within CCNA_02627at 2777.974 kb on - strand, within CCNA_02627at 2777.994 kb on - strand, within CCNA_02627at 2778.008 kb on - strand, within CCNA_02627at 2778.039 kb on - strand, within CCNA_02627at 2778.040 kb on - strand, within CCNA_02627at 2778.042 kb on + strand, within CCNA_02627at 2778.060 kb on + strand, within CCNA_02627at 2778.060 kb on + strand, within CCNA_02627at 2778.068 kb on - strand, within CCNA_02627at 2778.068 kb on - strand, within CCNA_02627at 2778.068 kb on - strand, within CCNA_02627at 2778.077 kb on + strand, within CCNA_02627at 2778.084 kb on + strand, within CCNA_02627at 2778.084 kb on + strand, within CCNA_02627at 2778.084 kb on + strand, within CCNA_02627at 2778.084 kb on + strand, within CCNA_02627at 2778.084 kb on + strand, within CCNA_02627at 2778.092 kb on - strand, within CCNA_02627at 2778.092 kb on - strand, within CCNA_02627at 2778.100 kb on - strand, within CCNA_02627at 2778.102 kb on + strand, within CCNA_02627at 2778.107 kb on + strand, within CCNA_02627at 2778.107 kb on + strand, within CCNA_02627at 2778.114 kb on + strand, within CCNA_02627at 2778.114 kb on + strand, within CCNA_02627at 2778.115 kb on - strand, within CCNA_02627at 2778.122 kb on - strand, within CCNA_02627at 2778.122 kb on - strand, within CCNA_02627at 2778.204 kb on + strandat 2778.212 kb on - strandat 2778.228 kb on + strandat 2778.228 kb on + strandat 2778.235 kb on + strandat 2778.236 kb on + strandat 2778.236 kb on - strandat 2778.244 kb on - strandat 2778.259 kb on + strandat 2778.305 kb on + strandat 2778.326 kb on - strandat 2778.403 kb on + strandat 2778.403 kb on + strandat 2778.403 kb on + strandat 2778.406 kb on + strandat 2778.411 kb on - strandat 2778.411 kb on - strandat 2778.430 kb on - strandat 2778.440 kb on - strandat 2778.498 kb on + strandat 2778.500 kb on + strandat 2778.506 kb on - strandat 2778.513 kb on + strandat 2778.518 kb on + strandat 2778.532 kb on - strandat 2778.534 kb on + strandat 2778.534 kb on - strandat 2779.409 kb on + strandat 2779.468 kb on + strandat 2779.497 kb on - strandat 2779.497 kb on - strandat 2779.499 kb on + strandat 2779.552 kb on - strandat 2779.566 kb on + strandat 2779.592 kb on + strandat 2779.599 kb on + strandat 2779.607 kb on - strandat 2779.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,777,553 + CCNA_02627 0.46 -0.6
2,777,571 - CCNA_02627 0.47 +1.1
2,777,581 + CCNA_02627 0.48 -1.3
2,777,582 - CCNA_02627 0.48 -0.6
2,777,605 - CCNA_02627 0.50 +1.4
2,777,630 - CCNA_02627 0.51 +0.5
2,777,640 - CCNA_02627 0.52 +1.3
2,777,669 + CCNA_02627 0.54 -1.3
2,777,672 + CCNA_02627 0.54 -0.6
2,777,697 + CCNA_02627 0.56 -1.0
2,777,705 + CCNA_02627 0.57 -0.1
2,777,741 + CCNA_02627 0.59 -2.4
2,777,749 - CCNA_02627 0.60 -1.1
2,777,810 + CCNA_02627 0.64 -0.4
2,777,839 + CCNA_02627 0.66 -0.6
2,777,853 - CCNA_02627 0.67 -0.3
2,777,862 + CCNA_02627 0.68 -1.0
2,777,862 + CCNA_02627 0.68 -1.0
2,777,892 + CCNA_02627 0.70 -2.1
2,777,892 + CCNA_02627 0.70 -0.5
2,777,910 + CCNA_02627 0.71 +0.1
2,777,910 + CCNA_02627 0.71 -0.0
2,777,910 + CCNA_02627 0.71 +0.4
2,777,910 + CCNA_02627 0.71 -2.6
2,777,918 - CCNA_02627 0.72 +0.7
2,777,918 - CCNA_02627 0.72 -0.3
2,777,918 - CCNA_02627 0.72 -0.4
2,777,918 - CCNA_02627 0.72 -0.5
2,777,918 - CCNA_02627 0.72 -0.4
2,777,918 - CCNA_02627 0.72 +1.1
2,777,918 - CCNA_02627 0.72 -0.0
2,777,918 - CCNA_02627 0.72 -0.2
2,777,933 - CCNA_02627 0.73 +1.4
2,777,966 + CCNA_02627 0.75 +0.2
2,777,974 - CCNA_02627 0.76 -0.5
2,777,974 - CCNA_02627 0.76 -0.1
2,777,994 - CCNA_02627 0.77 +0.9
2,778,008 - CCNA_02627 0.78 +0.9
2,778,039 - CCNA_02627 0.81 -1.1
2,778,040 - CCNA_02627 0.81 +0.0
2,778,042 + CCNA_02627 0.81 -1.1
2,778,060 + CCNA_02627 0.82 -1.0
2,778,060 + CCNA_02627 0.82 -2.9
2,778,068 - CCNA_02627 0.83 -0.1
2,778,068 - CCNA_02627 0.83 +0.8
2,778,068 - CCNA_02627 0.83 +0.2
2,778,077 + CCNA_02627 0.83 +0.6
2,778,084 + CCNA_02627 0.84 -1.2
2,778,084 + CCNA_02627 0.84 -0.1
2,778,084 + CCNA_02627 0.84 -1.5
2,778,084 + CCNA_02627 0.84 -2.3
2,778,084 + CCNA_02627 0.84 +3.2
2,778,092 - CCNA_02627 0.84 -1.9
2,778,092 - CCNA_02627 0.84 +0.3
2,778,100 - CCNA_02627 0.85 +1.6
2,778,102 + CCNA_02627 0.85 -0.6
2,778,107 + CCNA_02627 0.85 +0.9
2,778,107 + CCNA_02627 0.85 -1.1
2,778,114 + CCNA_02627 0.86 -0.7
2,778,114 + CCNA_02627 0.86 -1.7
2,778,115 - CCNA_02627 0.86 +1.6
2,778,122 - CCNA_02627 0.87 +0.2
2,778,122 - CCNA_02627 0.87 -0.7
2,778,204 + -0.1
2,778,212 - +0.1
2,778,228 + -1.8
2,778,228 + -2.4
2,778,235 + +0.6
2,778,236 + -0.0
2,778,236 - +1.1
2,778,244 - +0.4
2,778,259 + -0.6
2,778,305 + -1.7
2,778,326 - -0.5
2,778,403 + -0.7
2,778,403 + -0.6
2,778,403 + -0.4
2,778,406 + +0.4
2,778,411 - +1.2
2,778,411 - +2.0
2,778,430 - +1.5
2,778,440 - +0.4
2,778,498 + -0.7
2,778,500 + -0.0
2,778,506 - +2.0
2,778,513 + -0.7
2,778,518 + -1.3
2,778,532 - +1.5
2,778,534 + -0.6
2,778,534 - +3.1
2,779,409 + +1.4
2,779,468 + +0.6
2,779,497 - +0.6
2,779,497 - +1.5
2,779,499 + -0.4
2,779,552 - +1.0
2,779,566 + -0.5
2,779,592 + +0.0
2,779,599 + -0.6
2,779,607 - +2.0
2,779,607 - +2.0

Or see this region's nucleotide sequence