Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02389

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02387 and CCNA_02388 are separated by 42 nucleotidesCCNA_02388 and CCNA_02389 overlap by 4 nucleotidesCCNA_02389 and CCNA_02390 are separated by 69 nucleotidesCCNA_02390 and CCNA_R0056 are separated by 47 nucleotides CCNA_02387: CCNA_02387 - glutathione reductase, at 2,530,722 to 2,532,122 _02387 CCNA_02388: CCNA_02388 - ribose 5-phosphate isomerase, at 2,532,165 to 2,532,848 _02388 CCNA_02389: CCNA_02389 - glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase, at 2,532,845 to 2,534,233 _02389 CCNA_02390: CCNA_02390 - phosphoglycolate phosphatase, at 2,534,303 to 2,535,016 _02390 CCNA_R0056: CCNA_R0056 - tRNA-Val, at 2,535,064 to 2,535,138 _R0056 Position (kb) 2532 2533 2534 2535Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2531.910 kb on + strand, within CCNA_02387at 2531.916 kb on + strand, within CCNA_02387at 2531.918 kb on - strand, within CCNA_02387at 2531.918 kb on - strand, within CCNA_02387at 2531.918 kb on - strand, within CCNA_02387at 2531.919 kb on - strand, within CCNA_02387at 2531.924 kb on - strand, within CCNA_02387at 2531.934 kb on - strand, within CCNA_02387at 2531.934 kb on - strand, within CCNA_02387at 2531.952 kb on + strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.990 kb on - strandat 2532.007 kb on + strandat 2532.083 kb on - strandat 2532.106 kb on + strandat 2532.109 kb on - strandat 2532.122 kb on + strandat 2532.158 kb on - strandat 2532.171 kb on - strandat 2532.171 kb on - strandat 2532.171 kb on - strandat 2532.191 kb on + strandat 2532.860 kb on - strandat 2532.885 kb on - strandat 2534.237 kb on - strandat 2534.247 kb on + strandat 2534.247 kb on + strandat 2534.255 kb on - strandat 2534.255 kb on - strandat 2534.301 kb on - strandat 2534.308 kb on - strandat 2534.308 kb on - strandat 2534.362 kb on + strandat 2534.372 kb on + strandat 2534.436 kb on + strand, within CCNA_02390at 2534.477 kb on + strand, within CCNA_02390at 2534.542 kb on - strand, within CCNA_02390at 2534.576 kb on + strand, within CCNA_02390at 2534.612 kb on + strand, within CCNA_02390at 2534.644 kb on + strand, within CCNA_02390at 2534.650 kb on + strand, within CCNA_02390at 2534.653 kb on - strand, within CCNA_02390at 2534.684 kb on + strand, within CCNA_02390at 2534.689 kb on + strand, within CCNA_02390at 2534.733 kb on + strand, within CCNA_02390at 2534.747 kb on + strand, within CCNA_02390at 2534.792 kb on + strand, within CCNA_02390at 2534.819 kb on + strand, within CCNA_02390at 2534.825 kb on + strand, within CCNA_02390at 2534.844 kb on - strand, within CCNA_02390at 2534.912 kb on + strand, within CCNA_02390at 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.968 kb on - strandat 2535.161 kb on + strandat 2535.161 kb on + strandat 2535.183 kb on + strandat 2535.201 kb on - strandat 2535.214 kb on + strandat 2535.214 kb on + strandat 2535.216 kb on + strandat 2535.222 kb on - strandat 2535.222 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,531,910 + CCNA_02387 0.85 +3.2
2,531,916 + CCNA_02387 0.85 +0.3
2,531,918 - CCNA_02387 0.85 +2.2
2,531,918 - CCNA_02387 0.85 +2.5
2,531,918 - CCNA_02387 0.85 +2.2
2,531,919 - CCNA_02387 0.85 +2.3
2,531,924 - CCNA_02387 0.86 +2.0
2,531,934 - CCNA_02387 0.87 +2.0
2,531,934 - CCNA_02387 0.87 +2.2
2,531,952 + CCNA_02387 0.88 +0.2
2,531,960 - CCNA_02387 0.88 +2.1
2,531,960 - CCNA_02387 0.88 +1.5
2,531,960 - CCNA_02387 0.88 +1.8
2,531,960 - CCNA_02387 0.88 +0.2
2,531,960 - CCNA_02387 0.88 +1.5
2,531,990 - +1.6
2,532,007 + +1.0
2,532,083 - +2.3
2,532,106 + -1.8
2,532,109 - +0.4
2,532,122 + +0.1
2,532,158 - +1.0
2,532,171 - +1.3
2,532,171 - +1.3
2,532,171 - +1.7
2,532,191 + -0.4
2,532,860 - +1.7
2,532,885 - +1.6
2,534,237 - +0.8
2,534,247 + -0.5
2,534,247 + -0.4
2,534,255 - +0.5
2,534,255 - -0.1
2,534,301 - -0.5
2,534,308 - -0.0
2,534,308 - +1.0
2,534,362 + +0.6
2,534,372 + -1.5
2,534,436 + CCNA_02390 0.19 -1.7
2,534,477 + CCNA_02390 0.24 -0.9
2,534,542 - CCNA_02390 0.33 -1.3
2,534,576 + CCNA_02390 0.38 -1.3
2,534,612 + CCNA_02390 0.43 -0.4
2,534,644 + CCNA_02390 0.48 -2.0
2,534,650 + CCNA_02390 0.49 -0.7
2,534,653 - CCNA_02390 0.49 -2.3
2,534,684 + CCNA_02390 0.53 -2.4
2,534,689 + CCNA_02390 0.54 -1.3
2,534,733 + CCNA_02390 0.60 -0.8
2,534,747 + CCNA_02390 0.62 -1.2
2,534,792 + CCNA_02390 0.68 -1.3
2,534,819 + CCNA_02390 0.72 -0.2
2,534,825 + CCNA_02390 0.73 -1.9
2,534,844 - CCNA_02390 0.76 -0.8
2,534,912 + CCNA_02390 0.85 -2.1
2,534,958 + +0.6
2,534,958 + +0.3
2,534,958 + +0.1
2,534,958 + +1.1
2,534,958 + +2.6
2,534,958 + +0.4
2,534,958 + +1.0
2,534,966 - -2.6
2,534,966 - -1.9
2,534,966 - -1.0
2,534,966 - -1.1
2,534,966 - +0.2
2,534,968 - -1.8
2,535,161 + +1.4
2,535,161 + +2.1
2,535,183 + +0.7
2,535,201 - -1.2
2,535,214 + +0.2
2,535,214 + +0.0
2,535,216 + +1.2
2,535,222 - -0.5
2,535,222 - -1.9

Or see this region's nucleotide sequence