Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02387 and CCNA_02388 are separated by 42 nucleotides CCNA_02388 and CCNA_02389 overlap by 4 nucleotides CCNA_02389 and CCNA_02390 are separated by 69 nucleotides CCNA_02390 and CCNA_R0056 are separated by 47 nucleotides
CCNA_02387: CCNA_02387 - glutathione reductase, at 2,530,722 to 2,532,122
_02387
CCNA_02388: CCNA_02388 - ribose 5-phosphate isomerase, at 2,532,165 to 2,532,848
_02388
CCNA_02389: CCNA_02389 - glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase, at 2,532,845 to 2,534,233
_02389
CCNA_02390: CCNA_02390 - phosphoglycolate phosphatase, at 2,534,303 to 2,535,016
_02390
CCNA_R0056: CCNA_R0056 - tRNA-Val, at 2,535,064 to 2,535,138
_R0056
Position (kb)
2532
2533
2534
2535 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2531.910 kb on + strand, within CCNA_02387 at 2531.916 kb on + strand, within CCNA_02387 at 2531.918 kb on - strand, within CCNA_02387 at 2531.918 kb on - strand, within CCNA_02387 at 2531.918 kb on - strand, within CCNA_02387 at 2531.919 kb on - strand, within CCNA_02387 at 2531.924 kb on - strand, within CCNA_02387 at 2531.934 kb on - strand, within CCNA_02387 at 2531.934 kb on - strand, within CCNA_02387 at 2531.952 kb on + strand, within CCNA_02387 at 2531.960 kb on - strand, within CCNA_02387 at 2531.960 kb on - strand, within CCNA_02387 at 2531.960 kb on - strand, within CCNA_02387 at 2531.960 kb on - strand, within CCNA_02387 at 2531.960 kb on - strand, within CCNA_02387 at 2531.990 kb on - strand at 2532.007 kb on + strand at 2532.083 kb on - strand at 2532.106 kb on + strand at 2532.109 kb on - strand at 2532.122 kb on + strand at 2532.158 kb on - strand at 2532.171 kb on - strand at 2532.171 kb on - strand at 2532.171 kb on - strand at 2532.191 kb on + strand at 2532.860 kb on - strand at 2532.885 kb on - strand at 2534.237 kb on - strand at 2534.247 kb on + strand at 2534.247 kb on + strand at 2534.255 kb on - strand at 2534.255 kb on - strand at 2534.301 kb on - strand at 2534.308 kb on - strand at 2534.308 kb on - strand at 2534.362 kb on + strand at 2534.372 kb on + strand at 2534.436 kb on + strand, within CCNA_02390 at 2534.477 kb on + strand, within CCNA_02390 at 2534.542 kb on - strand, within CCNA_02390 at 2534.576 kb on + strand, within CCNA_02390 at 2534.612 kb on + strand, within CCNA_02390 at 2534.644 kb on + strand, within CCNA_02390 at 2534.650 kb on + strand, within CCNA_02390 at 2534.653 kb on - strand, within CCNA_02390 at 2534.684 kb on + strand, within CCNA_02390 at 2534.689 kb on + strand, within CCNA_02390 at 2534.733 kb on + strand, within CCNA_02390 at 2534.747 kb on + strand, within CCNA_02390 at 2534.792 kb on + strand, within CCNA_02390 at 2534.819 kb on + strand, within CCNA_02390 at 2534.825 kb on + strand, within CCNA_02390 at 2534.844 kb on - strand, within CCNA_02390 at 2534.912 kb on + strand, within CCNA_02390 at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.968 kb on - strand at 2535.161 kb on + strand at 2535.161 kb on + strand at 2535.183 kb on + strand at 2535.201 kb on - strand at 2535.214 kb on + strand at 2535.214 kb on + strand at 2535.216 kb on + strand at 2535.222 kb on - strand at 2535.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,531,910 + CCNA_02387 0.85 +3.2 2,531,916 + CCNA_02387 0.85 +0.3 2,531,918 - CCNA_02387 0.85 +2.2 2,531,918 - CCNA_02387 0.85 +2.5 2,531,918 - CCNA_02387 0.85 +2.2 2,531,919 - CCNA_02387 0.85 +2.3 2,531,924 - CCNA_02387 0.86 +2.0 2,531,934 - CCNA_02387 0.87 +2.0 2,531,934 - CCNA_02387 0.87 +2.2 2,531,952 + CCNA_02387 0.88 +0.2 2,531,960 - CCNA_02387 0.88 +2.1 2,531,960 - CCNA_02387 0.88 +1.5 2,531,960 - CCNA_02387 0.88 +1.8 2,531,960 - CCNA_02387 0.88 +0.2 2,531,960 - CCNA_02387 0.88 +1.5 2,531,990 - +1.6 2,532,007 + +1.0 2,532,083 - +2.3 2,532,106 + -1.8 2,532,109 - +0.4 2,532,122 + +0.1 2,532,158 - +1.0 2,532,171 - +1.3 2,532,171 - +1.3 2,532,171 - +1.7 2,532,191 + -0.4 2,532,860 - +1.7 2,532,885 - +1.6 2,534,237 - +0.8 2,534,247 + -0.5 2,534,247 + -0.4 2,534,255 - +0.5 2,534,255 - -0.1 2,534,301 - -0.5 2,534,308 - -0.0 2,534,308 - +1.0 2,534,362 + +0.6 2,534,372 + -1.5 2,534,436 + CCNA_02390 0.19 -1.7 2,534,477 + CCNA_02390 0.24 -0.9 2,534,542 - CCNA_02390 0.33 -1.3 2,534,576 + CCNA_02390 0.38 -1.3 2,534,612 + CCNA_02390 0.43 -0.4 2,534,644 + CCNA_02390 0.48 -2.0 2,534,650 + CCNA_02390 0.49 -0.7 2,534,653 - CCNA_02390 0.49 -2.3 2,534,684 + CCNA_02390 0.53 -2.4 2,534,689 + CCNA_02390 0.54 -1.3 2,534,733 + CCNA_02390 0.60 -0.8 2,534,747 + CCNA_02390 0.62 -1.2 2,534,792 + CCNA_02390 0.68 -1.3 2,534,819 + CCNA_02390 0.72 -0.2 2,534,825 + CCNA_02390 0.73 -1.9 2,534,844 - CCNA_02390 0.76 -0.8 2,534,912 + CCNA_02390 0.85 -2.1 2,534,958 + +0.6 2,534,958 + +0.3 2,534,958 + +0.1 2,534,958 + +1.1 2,534,958 + +2.6 2,534,958 + +0.4 2,534,958 + +1.0 2,534,966 - -2.6 2,534,966 - -1.9 2,534,966 - -1.0 2,534,966 - -1.1 2,534,966 - +0.2 2,534,968 - -1.8 2,535,161 + +1.4 2,535,161 + +2.1 2,535,183 + +0.7 2,535,201 - -1.2 2,535,214 + +0.2 2,535,214 + +0.0 2,535,216 + +1.2 2,535,222 - -0.5 2,535,222 - -1.9
Or see this region's nucleotide sequence