Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02368 and CCNA_02369 overlap by 25 nucleotides CCNA_02369 and CCNA_02370 are separated by 309 nucleotides
CCNA_02368: CCNA_02368 - alpha-glucosidase, at 2,510,397 to 2,512,040
_02368
CCNA_02369: CCNA_02369 - alpha-amylase, at 2,512,016 to 2,513,830
_02369
CCNA_02370: CCNA_02370 - TonB-dependent maltose outer membrane transporter malA, at 2,514,140 to 2,516,905
_02370
Position (kb)
2512
2513
2514 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2511.023 kb on - strand, within CCNA_02368 at 2511.024 kb on - strand, within CCNA_02368 at 2511.024 kb on - strand, within CCNA_02368 at 2511.122 kb on - strand, within CCNA_02368 at 2511.134 kb on - strand, within CCNA_02368 at 2511.134 kb on - strand, within CCNA_02368 at 2511.163 kb on - strand, within CCNA_02368 at 2511.163 kb on - strand, within CCNA_02368 at 2511.189 kb on - strand, within CCNA_02368 at 2511.347 kb on + strand, within CCNA_02368 at 2511.347 kb on + strand, within CCNA_02368 at 2511.352 kb on + strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.362 kb on - strand, within CCNA_02368 at 2511.362 kb on - strand, within CCNA_02368 at 2511.393 kb on + strand, within CCNA_02368 at 2511.409 kb on + strand, within CCNA_02368 at 2511.409 kb on + strand, within CCNA_02368 at 2511.417 kb on - strand, within CCNA_02368 at 2511.417 kb on - strand, within CCNA_02368 at 2511.459 kb on - strand, within CCNA_02368 at 2511.496 kb on + strand, within CCNA_02368 at 2511.504 kb on - strand, within CCNA_02368 at 2511.520 kb on + strand, within CCNA_02368 at 2511.520 kb on + strand, within CCNA_02368 at 2511.543 kb on - strand, within CCNA_02368 at 2511.546 kb on - strand, within CCNA_02368 at 2511.548 kb on - strand, within CCNA_02368 at 2511.600 kb on - strand, within CCNA_02368 at 2511.600 kb on - strand, within CCNA_02368 at 2511.611 kb on - strand, within CCNA_02368 at 2511.646 kb on + strand, within CCNA_02368 at 2511.654 kb on + strand, within CCNA_02368 at 2511.654 kb on - strand, within CCNA_02368 at 2511.659 kb on + strand, within CCNA_02368 at 2511.659 kb on + strand, within CCNA_02368 at 2511.667 kb on + strand, within CCNA_02368 at 2511.667 kb on - strand, within CCNA_02368 at 2511.667 kb on - strand, within CCNA_02368 at 2511.667 kb on - strand, within CCNA_02368 at 2511.710 kb on - strand, within CCNA_02368 at 2511.777 kb on - strand, within CCNA_02368 at 2511.785 kb on - strand, within CCNA_02368 at 2511.880 kb on - strand at 2511.939 kb on - strand at 2512.120 kb on - strand at 2512.120 kb on - strand at 2512.139 kb on + strand at 2512.154 kb on - strand at 2512.181 kb on + strand at 2512.211 kb on - strand, within CCNA_02369 at 2512.226 kb on + strand, within CCNA_02369 at 2512.247 kb on - strand, within CCNA_02369 at 2512.247 kb on - strand, within CCNA_02369 at 2512.257 kb on + strand, within CCNA_02369 at 2512.377 kb on + strand, within CCNA_02369 at 2512.423 kb on - strand, within CCNA_02369 at 2512.474 kb on - strand, within CCNA_02369 at 2512.474 kb on - strand, within CCNA_02369 at 2512.521 kb on + strand, within CCNA_02369 at 2512.529 kb on - strand, within CCNA_02369 at 2512.534 kb on - strand, within CCNA_02369 at 2512.666 kb on - strand, within CCNA_02369 at 2512.701 kb on + strand, within CCNA_02369 at 2512.701 kb on + strand, within CCNA_02369 at 2512.704 kb on - strand, within CCNA_02369 at 2512.709 kb on - strand, within CCNA_02369 at 2512.709 kb on - strand, within CCNA_02369 at 2512.725 kb on - strand, within CCNA_02369 at 2512.751 kb on + strand, within CCNA_02369 at 2512.751 kb on + strand, within CCNA_02369 at 2512.759 kb on - strand, within CCNA_02369 at 2512.759 kb on - strand, within CCNA_02369 at 2512.785 kb on - strand, within CCNA_02369 at 2512.811 kb on + strand, within CCNA_02369 at 2512.830 kb on - strand, within CCNA_02369 at 2512.848 kb on + strand, within CCNA_02369 at 2512.848 kb on + strand, within CCNA_02369 at 2512.848 kb on + strand, within CCNA_02369 at 2512.848 kb on + strand, within CCNA_02369 at 2512.848 kb on + strand, within CCNA_02369 at 2512.848 kb on + strand, within CCNA_02369 at 2512.848 kb on + strand, within CCNA_02369 at 2512.856 kb on - strand, within CCNA_02369 at 2512.862 kb on - strand, within CCNA_02369 at 2512.887 kb on - strand, within CCNA_02369 at 2512.949 kb on + strand, within CCNA_02369 at 2512.949 kb on - strand, within CCNA_02369 at 2512.951 kb on + strand, within CCNA_02369 at 2512.973 kb on - strand, within CCNA_02369 at 2512.990 kb on - strand, within CCNA_02369 at 2513.048 kb on + strand, within CCNA_02369 at 2513.065 kb on - strand, within CCNA_02369 at 2513.136 kb on + strand, within CCNA_02369 at 2513.145 kb on - strand, within CCNA_02369 at 2513.149 kb on + strand, within CCNA_02369 at 2513.151 kb on + strand, within CCNA_02369 at 2513.164 kb on - strand, within CCNA_02369 at 2513.210 kb on + strand, within CCNA_02369 at 2513.250 kb on - strand, within CCNA_02369 at 2513.254 kb on - strand, within CCNA_02369 at 2513.259 kb on - strand, within CCNA_02369 at 2513.271 kb on + strand, within CCNA_02369 at 2513.292 kb on + strand, within CCNA_02369 at 2513.321 kb on + strand at 2513.321 kb on + strand, within CCNA_02369 at 2513.321 kb on - strand, within CCNA_02369 at 2513.329 kb on - strand, within CCNA_02369 at 2513.337 kb on + strand, within CCNA_02369 at 2513.344 kb on + strand, within CCNA_02369 at 2513.344 kb on + strand, within CCNA_02369 at 2513.344 kb on + strand, within CCNA_02369 at 2513.352 kb on - strand, within CCNA_02369 at 2513.357 kb on + strand, within CCNA_02369 at 2513.365 kb on - strand, within CCNA_02369 at 2513.372 kb on + strand, within CCNA_02369 at 2513.380 kb on - strand, within CCNA_02369 at 2513.397 kb on + strand, within CCNA_02369 at 2513.405 kb on - strand, within CCNA_02369 at 2513.405 kb on - strand, within CCNA_02369 at 2513.524 kb on + strand, within CCNA_02369 at 2513.536 kb on + strand, within CCNA_02369 at 2513.544 kb on - strand, within CCNA_02369 at 2513.546 kb on - strand, within CCNA_02369 at 2513.570 kb on - strand, within CCNA_02369 at 2513.570 kb on - strand, within CCNA_02369 at 2513.570 kb on - strand, within CCNA_02369 at 2513.571 kb on - strand, within CCNA_02369 at 2513.572 kb on - strand, within CCNA_02369 at 2513.582 kb on + strand, within CCNA_02369 at 2513.631 kb on - strand, within CCNA_02369 at 2513.714 kb on + strand at 2513.800 kb on - strand at 2513.822 kb on + strand at 2513.840 kb on - strand at 2514.025 kb on - strand at 2514.101 kb on + strand at 2514.101 kb on + strand at 2514.109 kb on - strand at 2514.109 kb on - strand at 2514.109 kb on - strand at 2514.111 kb on + strand at 2514.111 kb on + strand at 2514.111 kb on + strand at 2514.111 kb on + strand at 2514.111 kb on + strand at 2514.111 kb on + strand at 2514.111 kb on + strand at 2514.119 kb on - strand at 2514.124 kb on - strand at 2514.127 kb on + strand at 2514.187 kb on + strand at 2514.227 kb on + strand at 2514.227 kb on + strand at 2514.233 kb on + strand at 2514.269 kb on - strand at 2514.276 kb on - strand at 2514.426 kb on + strand, within CCNA_02370 at 2514.480 kb on + strand, within CCNA_02370 at 2514.492 kb on - strand, within CCNA_02370 at 2514.590 kb on - strand, within CCNA_02370 at 2514.592 kb on + strand, within CCNA_02370 at 2514.598 kb on - strand, within CCNA_02370 at 2514.619 kb on - strand, within CCNA_02370 at 2514.621 kb on + strand, within CCNA_02370 at 2514.626 kb on + strand, within CCNA_02370 at 2514.639 kb on + strand, within CCNA_02370 at 2514.647 kb on - strand, within CCNA_02370 at 2514.675 kb on - strand, within CCNA_02370 at 2514.699 kb on - strand, within CCNA_02370 at 2514.745 kb on + strand, within CCNA_02370 at 2514.760 kb on - strand, within CCNA_02370 at 2514.760 kb on - strand, within CCNA_02370 at 2514.804 kb on + strand, within CCNA_02370 at 2514.804 kb on + strand, within CCNA_02370 at 2514.809 kb on + strand, within CCNA_02370 at 2514.812 kb on - strand, within CCNA_02370 at 2514.817 kb on - strand, within CCNA_02370 at 2514.828 kb on + strand, within CCNA_02370
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,511,023 - CCNA_02368 0.38 +1.9 2,511,024 - CCNA_02368 0.38 +2.0 2,511,024 - CCNA_02368 0.38 +1.3 2,511,122 - CCNA_02368 0.44 +1.5 2,511,134 - CCNA_02368 0.45 +0.8 2,511,134 - CCNA_02368 0.45 +1.7 2,511,163 - CCNA_02368 0.47 +1.3 2,511,163 - CCNA_02368 0.47 +0.8 2,511,189 - CCNA_02368 0.48 +0.2 2,511,347 + CCNA_02368 0.58 +0.3 2,511,347 + CCNA_02368 0.58 -1.0 2,511,352 + CCNA_02368 0.58 -0.3 2,511,355 - CCNA_02368 0.58 +2.4 2,511,355 - CCNA_02368 0.58 +1.3 2,511,355 - CCNA_02368 0.58 +1.2 2,511,355 - CCNA_02368 0.58 +0.2 2,511,355 - CCNA_02368 0.58 +1.1 2,511,355 - CCNA_02368 0.58 -1.2 2,511,355 - CCNA_02368 0.58 +2.0 2,511,362 - CCNA_02368 0.59 +2.5 2,511,362 - CCNA_02368 0.59 +2.7 2,511,393 + CCNA_02368 0.61 -1.4 2,511,409 + CCNA_02368 0.62 -0.1 2,511,409 + CCNA_02368 0.62 +1.1 2,511,417 - CCNA_02368 0.62 +0.3 2,511,417 - CCNA_02368 0.62 +1.5 2,511,459 - CCNA_02368 0.65 +2.9 2,511,496 + CCNA_02368 0.67 -1.9 2,511,504 - CCNA_02368 0.67 +1.2 2,511,520 + CCNA_02368 0.68 -0.5 2,511,520 + CCNA_02368 0.68 -1.8 2,511,543 - CCNA_02368 0.70 +0.5 2,511,546 - CCNA_02368 0.70 +1.5 2,511,548 - CCNA_02368 0.70 -2.1 2,511,600 - CCNA_02368 0.73 +1.8 2,511,600 - CCNA_02368 0.73 +1.1 2,511,611 - CCNA_02368 0.74 +1.4 2,511,646 + CCNA_02368 0.76 -1.1 2,511,654 + CCNA_02368 0.76 -1.4 2,511,654 - CCNA_02368 0.76 +1.9 2,511,659 + CCNA_02368 0.77 -1.2 2,511,659 + CCNA_02368 0.77 -2.2 2,511,667 + CCNA_02368 0.77 +0.2 2,511,667 - CCNA_02368 0.77 +1.3 2,511,667 - CCNA_02368 0.77 +3.3 2,511,667 - CCNA_02368 0.77 -0.7 2,511,710 - CCNA_02368 0.80 +1.5 2,511,777 - CCNA_02368 0.84 +1.9 2,511,785 - CCNA_02368 0.84 +1.8 2,511,880 - +1.6 2,511,939 - +0.8 2,512,120 - +0.2 2,512,120 - -0.8 2,512,139 + -0.5 2,512,154 - +0.1 2,512,181 + -1.0 2,512,211 - CCNA_02369 0.11 -2.3 2,512,226 + CCNA_02369 0.12 +0.5 2,512,247 - CCNA_02369 0.13 -0.3 2,512,247 - CCNA_02369 0.13 -1.4 2,512,257 + CCNA_02369 0.13 -1.8 2,512,377 + CCNA_02369 0.20 +0.6 2,512,423 - CCNA_02369 0.22 +0.5 2,512,474 - CCNA_02369 0.25 -0.8 2,512,474 - CCNA_02369 0.25 -0.5 2,512,521 + CCNA_02369 0.28 -0.6 2,512,529 - CCNA_02369 0.28 -1.0 2,512,534 - CCNA_02369 0.29 -1.1 2,512,666 - CCNA_02369 0.36 -2.1 2,512,701 + CCNA_02369 0.38 -2.5 2,512,701 + CCNA_02369 0.38 -0.5 2,512,704 - CCNA_02369 0.38 +1.4 2,512,709 - CCNA_02369 0.38 -0.0 2,512,709 - CCNA_02369 0.38 -0.2 2,512,725 - CCNA_02369 0.39 +0.1 2,512,751 + CCNA_02369 0.40 -1.8 2,512,751 + CCNA_02369 0.40 -1.3 2,512,759 - CCNA_02369 0.41 -1.7 2,512,759 - CCNA_02369 0.41 -0.3 2,512,785 - CCNA_02369 0.42 -1.5 2,512,811 + CCNA_02369 0.44 +0.6 2,512,830 - CCNA_02369 0.45 -1.6 2,512,848 + CCNA_02369 0.46 -0.6 2,512,848 + CCNA_02369 0.46 -1.4 2,512,848 + CCNA_02369 0.46 +0.6 2,512,848 + CCNA_02369 0.46 -1.5 2,512,848 + CCNA_02369 0.46 -1.7 2,512,848 + CCNA_02369 0.46 -2.1 2,512,848 + CCNA_02369 0.46 -2.3 2,512,856 - CCNA_02369 0.46 -0.6 2,512,862 - CCNA_02369 0.47 -0.6 2,512,887 - CCNA_02369 0.48 +1.7 2,512,949 + CCNA_02369 0.51 -1.2 2,512,949 - CCNA_02369 0.51 -1.5 2,512,951 + CCNA_02369 0.52 -1.8 2,512,973 - CCNA_02369 0.53 -1.7 2,512,990 - CCNA_02369 0.54 -0.8 2,513,048 + CCNA_02369 0.57 -1.5 2,513,065 - CCNA_02369 0.58 +0.6 2,513,136 + CCNA_02369 0.62 -1.0 2,513,145 - CCNA_02369 0.62 +1.9 2,513,149 + CCNA_02369 0.62 -2.3 2,513,151 + CCNA_02369 0.63 +0.6 2,513,164 - CCNA_02369 0.63 +2.0 2,513,210 + CCNA_02369 0.66 -2.4 2,513,250 - CCNA_02369 0.68 +1.0 2,513,254 - CCNA_02369 0.68 +0.7 2,513,259 - CCNA_02369 0.68 +0.6 2,513,271 + CCNA_02369 0.69 +0.2 2,513,292 + CCNA_02369 0.70 -1.2 2,513,321 + +1.6 2,513,321 + CCNA_02369 0.72 -0.8 2,513,321 - CCNA_02369 0.72 +1.0 2,513,329 - CCNA_02369 0.72 -1.2 2,513,337 + CCNA_02369 0.73 -1.8 2,513,344 + CCNA_02369 0.73 -0.8 2,513,344 + CCNA_02369 0.73 +1.3 2,513,344 + CCNA_02369 0.73 +0.2 2,513,352 - CCNA_02369 0.74 -1.6 2,513,357 + CCNA_02369 0.74 -0.2 2,513,365 - CCNA_02369 0.74 -2.6 2,513,372 + CCNA_02369 0.75 +1.6 2,513,380 - CCNA_02369 0.75 -3.4 2,513,397 + CCNA_02369 0.76 -1.7 2,513,405 - CCNA_02369 0.77 -1.0 2,513,405 - CCNA_02369 0.77 -1.2 2,513,524 + CCNA_02369 0.83 -2.2 2,513,536 + CCNA_02369 0.84 -1.9 2,513,544 - CCNA_02369 0.84 +0.8 2,513,546 - CCNA_02369 0.84 -0.7 2,513,570 - CCNA_02369 0.86 -1.6 2,513,570 - CCNA_02369 0.86 -1.4 2,513,570 - CCNA_02369 0.86 -0.3 2,513,571 - CCNA_02369 0.86 +0.7 2,513,572 - CCNA_02369 0.86 -1.0 2,513,582 + CCNA_02369 0.86 -0.3 2,513,631 - CCNA_02369 0.89 -0.8 2,513,714 + -2.2 2,513,800 - -1.6 2,513,822 + -0.9 2,513,840 - +0.7 2,514,025 - +0.1 2,514,101 + +0.6 2,514,101 + +1.6 2,514,109 - -1.1 2,514,109 - -0.9 2,514,109 - -0.9 2,514,111 + -0.6 2,514,111 + -0.4 2,514,111 + -1.1 2,514,111 + +0.7 2,514,111 + -1.5 2,514,111 + -3.5 2,514,111 + +1.0 2,514,119 - -1.4 2,514,124 - -0.7 2,514,127 + +0.7 2,514,187 + -1.7 2,514,227 + +0.4 2,514,227 + +0.1 2,514,233 + -2.0 2,514,269 - +0.6 2,514,276 - -1.4 2,514,426 + CCNA_02370 0.10 -1.2 2,514,480 + CCNA_02370 0.12 -0.2 2,514,492 - CCNA_02370 0.13 -0.6 2,514,590 - CCNA_02370 0.16 +1.7 2,514,592 + CCNA_02370 0.16 +0.8 2,514,598 - CCNA_02370 0.17 +1.1 2,514,619 - CCNA_02370 0.17 -1.8 2,514,621 + CCNA_02370 0.17 -0.2 2,514,626 + CCNA_02370 0.18 -0.1 2,514,639 + CCNA_02370 0.18 +0.8 2,514,647 - CCNA_02370 0.18 -2.7 2,514,675 - CCNA_02370 0.19 -1.0 2,514,699 - CCNA_02370 0.20 -1.8 2,514,745 + CCNA_02370 0.22 -0.5 2,514,760 - CCNA_02370 0.22 -1.1 2,514,760 - CCNA_02370 0.22 -0.2 2,514,804 + CCNA_02370 0.24 -0.1 2,514,804 + CCNA_02370 0.24 -1.7 2,514,809 + CCNA_02370 0.24 -2.2 2,514,812 - CCNA_02370 0.24 +0.2 2,514,817 - CCNA_02370 0.24 -1.7 2,514,828 + CCNA_02370 0.25 -2.2
Or see this region's nucleotide sequence