Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02369

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02368 and CCNA_02369 overlap by 25 nucleotidesCCNA_02369 and CCNA_02370 are separated by 309 nucleotides CCNA_02368: CCNA_02368 - alpha-glucosidase, at 2,510,397 to 2,512,040 _02368 CCNA_02369: CCNA_02369 - alpha-amylase, at 2,512,016 to 2,513,830 _02369 CCNA_02370: CCNA_02370 - TonB-dependent maltose outer membrane transporter malA, at 2,514,140 to 2,516,905 _02370 Position (kb) 2512 2513 2514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2511.023 kb on - strand, within CCNA_02368at 2511.024 kb on - strand, within CCNA_02368at 2511.024 kb on - strand, within CCNA_02368at 2511.122 kb on - strand, within CCNA_02368at 2511.134 kb on - strand, within CCNA_02368at 2511.134 kb on - strand, within CCNA_02368at 2511.163 kb on - strand, within CCNA_02368at 2511.163 kb on - strand, within CCNA_02368at 2511.189 kb on - strand, within CCNA_02368at 2511.347 kb on + strand, within CCNA_02368at 2511.347 kb on + strand, within CCNA_02368at 2511.352 kb on + strand, within CCNA_02368at 2511.355 kb on - strand, within CCNA_02368at 2511.355 kb on - strand, within CCNA_02368at 2511.355 kb on - strand, within CCNA_02368at 2511.355 kb on - strand, within CCNA_02368at 2511.355 kb on - strand, within CCNA_02368at 2511.355 kb on - strand, within CCNA_02368at 2511.355 kb on - strand, within CCNA_02368at 2511.362 kb on - strand, within CCNA_02368at 2511.362 kb on - strand, within CCNA_02368at 2511.393 kb on + strand, within CCNA_02368at 2511.409 kb on + strand, within CCNA_02368at 2511.409 kb on + strand, within CCNA_02368at 2511.417 kb on - strand, within CCNA_02368at 2511.417 kb on - strand, within CCNA_02368at 2511.459 kb on - strand, within CCNA_02368at 2511.496 kb on + strand, within CCNA_02368at 2511.504 kb on - strand, within CCNA_02368at 2511.520 kb on + strand, within CCNA_02368at 2511.520 kb on + strand, within CCNA_02368at 2511.543 kb on - strand, within CCNA_02368at 2511.546 kb on - strand, within CCNA_02368at 2511.548 kb on - strand, within CCNA_02368at 2511.600 kb on - strand, within CCNA_02368at 2511.600 kb on - strand, within CCNA_02368at 2511.611 kb on - strand, within CCNA_02368at 2511.646 kb on + strand, within CCNA_02368at 2511.654 kb on + strand, within CCNA_02368at 2511.654 kb on - strand, within CCNA_02368at 2511.659 kb on + strand, within CCNA_02368at 2511.659 kb on + strand, within CCNA_02368at 2511.667 kb on + strand, within CCNA_02368at 2511.667 kb on - strand, within CCNA_02368at 2511.667 kb on - strand, within CCNA_02368at 2511.667 kb on - strand, within CCNA_02368at 2511.710 kb on - strand, within CCNA_02368at 2511.777 kb on - strand, within CCNA_02368at 2511.785 kb on - strand, within CCNA_02368at 2511.880 kb on - strandat 2511.939 kb on - strandat 2512.120 kb on - strandat 2512.120 kb on - strandat 2512.139 kb on + strandat 2512.154 kb on - strandat 2512.181 kb on + strandat 2512.211 kb on - strand, within CCNA_02369at 2512.226 kb on + strand, within CCNA_02369at 2512.247 kb on - strand, within CCNA_02369at 2512.247 kb on - strand, within CCNA_02369at 2512.257 kb on + strand, within CCNA_02369at 2512.377 kb on + strand, within CCNA_02369at 2512.423 kb on - strand, within CCNA_02369at 2512.474 kb on - strand, within CCNA_02369at 2512.474 kb on - strand, within CCNA_02369at 2512.521 kb on + strand, within CCNA_02369at 2512.529 kb on - strand, within CCNA_02369at 2512.534 kb on - strand, within CCNA_02369at 2512.666 kb on - strand, within CCNA_02369at 2512.701 kb on + strand, within CCNA_02369at 2512.701 kb on + strand, within CCNA_02369at 2512.704 kb on - strand, within CCNA_02369at 2512.709 kb on - strand, within CCNA_02369at 2512.709 kb on - strand, within CCNA_02369at 2512.725 kb on - strand, within CCNA_02369at 2512.751 kb on + strand, within CCNA_02369at 2512.751 kb on + strand, within CCNA_02369at 2512.759 kb on - strand, within CCNA_02369at 2512.759 kb on - strand, within CCNA_02369at 2512.785 kb on - strand, within CCNA_02369at 2512.811 kb on + strand, within CCNA_02369at 2512.830 kb on - strand, within CCNA_02369at 2512.848 kb on + strand, within CCNA_02369at 2512.848 kb on + strand, within CCNA_02369at 2512.848 kb on + strand, within CCNA_02369at 2512.848 kb on + strand, within CCNA_02369at 2512.848 kb on + strand, within CCNA_02369at 2512.848 kb on + strand, within CCNA_02369at 2512.848 kb on + strand, within CCNA_02369at 2512.856 kb on - strand, within CCNA_02369at 2512.862 kb on - strand, within CCNA_02369at 2512.887 kb on - strand, within CCNA_02369at 2512.949 kb on + strand, within CCNA_02369at 2512.949 kb on - strand, within CCNA_02369at 2512.951 kb on + strand, within CCNA_02369at 2512.973 kb on - strand, within CCNA_02369at 2512.990 kb on - strand, within CCNA_02369at 2513.048 kb on + strand, within CCNA_02369at 2513.065 kb on - strand, within CCNA_02369at 2513.136 kb on + strand, within CCNA_02369at 2513.145 kb on - strand, within CCNA_02369at 2513.149 kb on + strand, within CCNA_02369at 2513.151 kb on + strand, within CCNA_02369at 2513.164 kb on - strand, within CCNA_02369at 2513.210 kb on + strand, within CCNA_02369at 2513.250 kb on - strand, within CCNA_02369at 2513.254 kb on - strand, within CCNA_02369at 2513.259 kb on - strand, within CCNA_02369at 2513.271 kb on + strand, within CCNA_02369at 2513.292 kb on + strand, within CCNA_02369at 2513.321 kb on + strandat 2513.321 kb on + strand, within CCNA_02369at 2513.321 kb on - strand, within CCNA_02369at 2513.329 kb on - strand, within CCNA_02369at 2513.337 kb on + strand, within CCNA_02369at 2513.344 kb on + strand, within CCNA_02369at 2513.344 kb on + strand, within CCNA_02369at 2513.344 kb on + strand, within CCNA_02369at 2513.352 kb on - strand, within CCNA_02369at 2513.357 kb on + strand, within CCNA_02369at 2513.365 kb on - strand, within CCNA_02369at 2513.372 kb on + strand, within CCNA_02369at 2513.380 kb on - strand, within CCNA_02369at 2513.397 kb on + strand, within CCNA_02369at 2513.405 kb on - strand, within CCNA_02369at 2513.405 kb on - strand, within CCNA_02369at 2513.524 kb on + strand, within CCNA_02369at 2513.536 kb on + strand, within CCNA_02369at 2513.544 kb on - strand, within CCNA_02369at 2513.546 kb on - strand, within CCNA_02369at 2513.570 kb on - strand, within CCNA_02369at 2513.570 kb on - strand, within CCNA_02369at 2513.570 kb on - strand, within CCNA_02369at 2513.571 kb on - strand, within CCNA_02369at 2513.572 kb on - strand, within CCNA_02369at 2513.582 kb on + strand, within CCNA_02369at 2513.631 kb on - strand, within CCNA_02369at 2513.714 kb on + strandat 2513.800 kb on - strandat 2513.822 kb on + strandat 2513.840 kb on - strandat 2514.025 kb on - strandat 2514.101 kb on + strandat 2514.101 kb on + strandat 2514.109 kb on - strandat 2514.109 kb on - strandat 2514.109 kb on - strandat 2514.111 kb on + strandat 2514.111 kb on + strandat 2514.111 kb on + strandat 2514.111 kb on + strandat 2514.111 kb on + strandat 2514.111 kb on + strandat 2514.111 kb on + strandat 2514.119 kb on - strandat 2514.124 kb on - strandat 2514.127 kb on + strandat 2514.187 kb on + strandat 2514.227 kb on + strandat 2514.227 kb on + strandat 2514.233 kb on + strandat 2514.269 kb on - strandat 2514.276 kb on - strandat 2514.426 kb on + strand, within CCNA_02370at 2514.480 kb on + strand, within CCNA_02370at 2514.492 kb on - strand, within CCNA_02370at 2514.590 kb on - strand, within CCNA_02370at 2514.592 kb on + strand, within CCNA_02370at 2514.598 kb on - strand, within CCNA_02370at 2514.619 kb on - strand, within CCNA_02370at 2514.621 kb on + strand, within CCNA_02370at 2514.626 kb on + strand, within CCNA_02370at 2514.639 kb on + strand, within CCNA_02370at 2514.647 kb on - strand, within CCNA_02370at 2514.675 kb on - strand, within CCNA_02370at 2514.699 kb on - strand, within CCNA_02370at 2514.745 kb on + strand, within CCNA_02370at 2514.760 kb on - strand, within CCNA_02370at 2514.760 kb on - strand, within CCNA_02370at 2514.804 kb on + strand, within CCNA_02370at 2514.804 kb on + strand, within CCNA_02370at 2514.809 kb on + strand, within CCNA_02370at 2514.812 kb on - strand, within CCNA_02370at 2514.817 kb on - strand, within CCNA_02370at 2514.828 kb on + strand, within CCNA_02370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
2,511,023 - CCNA_02368 0.38 +1.9
2,511,024 - CCNA_02368 0.38 +2.0
2,511,024 - CCNA_02368 0.38 +1.3
2,511,122 - CCNA_02368 0.44 +1.5
2,511,134 - CCNA_02368 0.45 +0.8
2,511,134 - CCNA_02368 0.45 +1.7
2,511,163 - CCNA_02368 0.47 +1.3
2,511,163 - CCNA_02368 0.47 +0.8
2,511,189 - CCNA_02368 0.48 +0.2
2,511,347 + CCNA_02368 0.58 +0.3
2,511,347 + CCNA_02368 0.58 -1.0
2,511,352 + CCNA_02368 0.58 -0.3
2,511,355 - CCNA_02368 0.58 +2.4
2,511,355 - CCNA_02368 0.58 +1.3
2,511,355 - CCNA_02368 0.58 +1.2
2,511,355 - CCNA_02368 0.58 +0.2
2,511,355 - CCNA_02368 0.58 +1.1
2,511,355 - CCNA_02368 0.58 -1.2
2,511,355 - CCNA_02368 0.58 +2.0
2,511,362 - CCNA_02368 0.59 +2.5
2,511,362 - CCNA_02368 0.59 +2.7
2,511,393 + CCNA_02368 0.61 -1.4
2,511,409 + CCNA_02368 0.62 -0.1
2,511,409 + CCNA_02368 0.62 +1.1
2,511,417 - CCNA_02368 0.62 +0.3
2,511,417 - CCNA_02368 0.62 +1.5
2,511,459 - CCNA_02368 0.65 +2.9
2,511,496 + CCNA_02368 0.67 -1.9
2,511,504 - CCNA_02368 0.67 +1.2
2,511,520 + CCNA_02368 0.68 -0.5
2,511,520 + CCNA_02368 0.68 -1.8
2,511,543 - CCNA_02368 0.70 +0.5
2,511,546 - CCNA_02368 0.70 +1.5
2,511,548 - CCNA_02368 0.70 -2.1
2,511,600 - CCNA_02368 0.73 +1.8
2,511,600 - CCNA_02368 0.73 +1.1
2,511,611 - CCNA_02368 0.74 +1.4
2,511,646 + CCNA_02368 0.76 -1.1
2,511,654 + CCNA_02368 0.76 -1.4
2,511,654 - CCNA_02368 0.76 +1.9
2,511,659 + CCNA_02368 0.77 -1.2
2,511,659 + CCNA_02368 0.77 -2.2
2,511,667 + CCNA_02368 0.77 +0.2
2,511,667 - CCNA_02368 0.77 +1.3
2,511,667 - CCNA_02368 0.77 +3.3
2,511,667 - CCNA_02368 0.77 -0.7
2,511,710 - CCNA_02368 0.80 +1.5
2,511,777 - CCNA_02368 0.84 +1.9
2,511,785 - CCNA_02368 0.84 +1.8
2,511,880 - +1.6
2,511,939 - +0.8
2,512,120 - +0.2
2,512,120 - -0.8
2,512,139 + -0.5
2,512,154 - +0.1
2,512,181 + -1.0
2,512,211 - CCNA_02369 0.11 -2.3
2,512,226 + CCNA_02369 0.12 +0.5
2,512,247 - CCNA_02369 0.13 -0.3
2,512,247 - CCNA_02369 0.13 -1.4
2,512,257 + CCNA_02369 0.13 -1.8
2,512,377 + CCNA_02369 0.20 +0.6
2,512,423 - CCNA_02369 0.22 +0.5
2,512,474 - CCNA_02369 0.25 -0.8
2,512,474 - CCNA_02369 0.25 -0.5
2,512,521 + CCNA_02369 0.28 -0.6
2,512,529 - CCNA_02369 0.28 -1.0
2,512,534 - CCNA_02369 0.29 -1.1
2,512,666 - CCNA_02369 0.36 -2.1
2,512,701 + CCNA_02369 0.38 -2.5
2,512,701 + CCNA_02369 0.38 -0.5
2,512,704 - CCNA_02369 0.38 +1.4
2,512,709 - CCNA_02369 0.38 -0.0
2,512,709 - CCNA_02369 0.38 -0.2
2,512,725 - CCNA_02369 0.39 +0.1
2,512,751 + CCNA_02369 0.40 -1.8
2,512,751 + CCNA_02369 0.40 -1.3
2,512,759 - CCNA_02369 0.41 -1.7
2,512,759 - CCNA_02369 0.41 -0.3
2,512,785 - CCNA_02369 0.42 -1.5
2,512,811 + CCNA_02369 0.44 +0.6
2,512,830 - CCNA_02369 0.45 -1.6
2,512,848 + CCNA_02369 0.46 -0.6
2,512,848 + CCNA_02369 0.46 -1.4
2,512,848 + CCNA_02369 0.46 +0.6
2,512,848 + CCNA_02369 0.46 -1.5
2,512,848 + CCNA_02369 0.46 -1.7
2,512,848 + CCNA_02369 0.46 -2.1
2,512,848 + CCNA_02369 0.46 -2.3
2,512,856 - CCNA_02369 0.46 -0.6
2,512,862 - CCNA_02369 0.47 -0.6
2,512,887 - CCNA_02369 0.48 +1.7
2,512,949 + CCNA_02369 0.51 -1.2
2,512,949 - CCNA_02369 0.51 -1.5
2,512,951 + CCNA_02369 0.52 -1.8
2,512,973 - CCNA_02369 0.53 -1.7
2,512,990 - CCNA_02369 0.54 -0.8
2,513,048 + CCNA_02369 0.57 -1.5
2,513,065 - CCNA_02369 0.58 +0.6
2,513,136 + CCNA_02369 0.62 -1.0
2,513,145 - CCNA_02369 0.62 +1.9
2,513,149 + CCNA_02369 0.62 -2.3
2,513,151 + CCNA_02369 0.63 +0.6
2,513,164 - CCNA_02369 0.63 +2.0
2,513,210 + CCNA_02369 0.66 -2.4
2,513,250 - CCNA_02369 0.68 +1.0
2,513,254 - CCNA_02369 0.68 +0.7
2,513,259 - CCNA_02369 0.68 +0.6
2,513,271 + CCNA_02369 0.69 +0.2
2,513,292 + CCNA_02369 0.70 -1.2
2,513,321 + +1.6
2,513,321 + CCNA_02369 0.72 -0.8
2,513,321 - CCNA_02369 0.72 +1.0
2,513,329 - CCNA_02369 0.72 -1.2
2,513,337 + CCNA_02369 0.73 -1.8
2,513,344 + CCNA_02369 0.73 -0.8
2,513,344 + CCNA_02369 0.73 +1.3
2,513,344 + CCNA_02369 0.73 +0.2
2,513,352 - CCNA_02369 0.74 -1.6
2,513,357 + CCNA_02369 0.74 -0.2
2,513,365 - CCNA_02369 0.74 -2.6
2,513,372 + CCNA_02369 0.75 +1.6
2,513,380 - CCNA_02369 0.75 -3.4
2,513,397 + CCNA_02369 0.76 -1.7
2,513,405 - CCNA_02369 0.77 -1.0
2,513,405 - CCNA_02369 0.77 -1.2
2,513,524 + CCNA_02369 0.83 -2.2
2,513,536 + CCNA_02369 0.84 -1.9
2,513,544 - CCNA_02369 0.84 +0.8
2,513,546 - CCNA_02369 0.84 -0.7
2,513,570 - CCNA_02369 0.86 -1.6
2,513,570 - CCNA_02369 0.86 -1.4
2,513,570 - CCNA_02369 0.86 -0.3
2,513,571 - CCNA_02369 0.86 +0.7
2,513,572 - CCNA_02369 0.86 -1.0
2,513,582 + CCNA_02369 0.86 -0.3
2,513,631 - CCNA_02369 0.89 -0.8
2,513,714 + -2.2
2,513,800 - -1.6
2,513,822 + -0.9
2,513,840 - +0.7
2,514,025 - +0.1
2,514,101 + +0.6
2,514,101 + +1.6
2,514,109 - -1.1
2,514,109 - -0.9
2,514,109 - -0.9
2,514,111 + -0.6
2,514,111 + -0.4
2,514,111 + -1.1
2,514,111 + +0.7
2,514,111 + -1.5
2,514,111 + -3.5
2,514,111 + +1.0
2,514,119 - -1.4
2,514,124 - -0.7
2,514,127 + +0.7
2,514,187 + -1.7
2,514,227 + +0.4
2,514,227 + +0.1
2,514,233 + -2.0
2,514,269 - +0.6
2,514,276 - -1.4
2,514,426 + CCNA_02370 0.10 -1.2
2,514,480 + CCNA_02370 0.12 -0.2
2,514,492 - CCNA_02370 0.13 -0.6
2,514,590 - CCNA_02370 0.16 +1.7
2,514,592 + CCNA_02370 0.16 +0.8
2,514,598 - CCNA_02370 0.17 +1.1
2,514,619 - CCNA_02370 0.17 -1.8
2,514,621 + CCNA_02370 0.17 -0.2
2,514,626 + CCNA_02370 0.18 -0.1
2,514,639 + CCNA_02370 0.18 +0.8
2,514,647 - CCNA_02370 0.18 -2.7
2,514,675 - CCNA_02370 0.19 -1.0
2,514,699 - CCNA_02370 0.20 -1.8
2,514,745 + CCNA_02370 0.22 -0.5
2,514,760 - CCNA_02370 0.22 -1.1
2,514,760 - CCNA_02370 0.22 -0.2
2,514,804 + CCNA_02370 0.24 -0.1
2,514,804 + CCNA_02370 0.24 -1.7
2,514,809 + CCNA_02370 0.24 -2.2
2,514,812 - CCNA_02370 0.24 +0.2
2,514,817 - CCNA_02370 0.24 -1.7
2,514,828 + CCNA_02370 0.25 -2.2

Or see this region's nucleotide sequence