Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01951 and CCNA_01952 are separated by 160 nucleotides CCNA_01952 and CCNA_03959 are separated by 368 nucleotides CCNA_03959 and CCNA_01954 overlap by 77 nucleotides
CCNA_01951: CCNA_01951 - multimodular transpeptidase-transglycosylase PbpY, at 2,093,252 to 2,095,621
_01951
CCNA_01952: CCNA_01952 - N-acetylmuramoyl-L-alanine amidase, at 2,095,782 to 2,096,969
_01952
CCNA_03959: CCNA_03959 - hypothetical protein, at 2,097,338 to 2,097,556
_03959
CCNA_01954: CCNA_01954 - ribonuclease E, at 2,097,480 to 2,100,176
_01954
Position (kb)
2095
2096
2097 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2094.849 kb on + strand, within CCNA_01951 at 2094.853 kb on - strand, within CCNA_01951 at 2094.981 kb on + strand, within CCNA_01951 at 2095.025 kb on - strand, within CCNA_01951 at 2095.033 kb on - strand, within CCNA_01951 at 2095.105 kb on + strand, within CCNA_01951 at 2095.111 kb on + strand, within CCNA_01951 at 2095.112 kb on - strand, within CCNA_01951 at 2095.234 kb on + strand, within CCNA_01951 at 2095.356 kb on + strand, within CCNA_01951 at 2095.385 kb on - strand at 2095.387 kb on + strand at 2095.422 kb on - strand at 2095.456 kb on - strand at 2095.484 kb on - strand at 2095.517 kb on - strand at 2095.517 kb on - strand at 2095.609 kb on + strand at 2095.627 kb on - strand at 2095.665 kb on - strand at 2095.686 kb on + strand at 2095.687 kb on - strand at 2095.716 kb on - strand at 2095.759 kb on + strand at 2095.767 kb on - strand at 2095.774 kb on - strand at 2095.780 kb on + strand at 2095.786 kb on + strand at 2095.799 kb on - strand at 2096.420 kb on - strand, within CCNA_01952 at 2096.923 kb on + strand at 2096.923 kb on + strand at 2096.923 kb on + strand at 2096.923 kb on + strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.942 kb on - strand at 2096.942 kb on - strand at 2096.952 kb on + strand at 2096.965 kb on - strand at 2096.967 kb on - strand at 2097.012 kb on - strand at 2097.042 kb on - strand at 2097.097 kb on - strand at 2097.117 kb on + strand at 2097.125 kb on - strand at 2097.128 kb on + strand at 2097.186 kb on + strand at 2097.221 kb on + strand at 2097.322 kb on + strand at 2097.368 kb on + strand at 2097.420 kb on + strand, within CCNA_03959 at 2097.451 kb on - strand, within CCNA_03959
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,094,849 + CCNA_01951 0.67 +0.2 2,094,853 - CCNA_01951 0.68 +0.8 2,094,981 + CCNA_01951 0.73 +1.3 2,095,025 - CCNA_01951 0.75 +1.0 2,095,033 - CCNA_01951 0.75 +1.9 2,095,105 + CCNA_01951 0.78 +0.3 2,095,111 + CCNA_01951 0.78 -1.7 2,095,112 - CCNA_01951 0.78 +0.9 2,095,234 + CCNA_01951 0.84 -0.5 2,095,356 + CCNA_01951 0.89 -0.3 2,095,385 - +0.9 2,095,387 + -1.2 2,095,422 - -1.1 2,095,456 - -0.2 2,095,484 - +0.3 2,095,517 - +1.4 2,095,517 - -0.9 2,095,609 + -0.8 2,095,627 - -0.1 2,095,665 - +0.6 2,095,686 + -2.2 2,095,687 - -0.6 2,095,716 - -1.0 2,095,759 + +2.7 2,095,767 - +1.6 2,095,774 - -0.1 2,095,780 + -0.7 2,095,786 + -2.4 2,095,799 - +0.5 2,096,420 - CCNA_01952 0.54 -0.3 2,096,923 + -0.6 2,096,923 + -1.2 2,096,923 + -2.0 2,096,923 + -1.2 2,096,931 - +0.9 2,096,931 - +1.4 2,096,931 - +1.4 2,096,931 - +0.6 2,096,931 - +1.0 2,096,931 - +1.2 2,096,931 - +1.2 2,096,931 - +1.3 2,096,931 - +1.2 2,096,931 - +2.3 2,096,942 - +1.7 2,096,942 - +0.9 2,096,952 + +0.4 2,096,965 - -1.2 2,096,967 - -0.3 2,097,012 - +0.7 2,097,042 - -1.4 2,097,097 - -0.2 2,097,117 + +0.8 2,097,125 - -2.5 2,097,128 + +0.7 2,097,186 + +1.3 2,097,221 + +0.2 2,097,322 + +1.7 2,097,368 + +2.1 2,097,420 + CCNA_03959 0.37 +2.7 2,097,451 - CCNA_03959 0.52 -2.0
Or see this region's nucleotide sequence