Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01952

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01951 and CCNA_01952 are separated by 160 nucleotidesCCNA_01952 and CCNA_03959 are separated by 368 nucleotidesCCNA_03959 and CCNA_01954 overlap by 77 nucleotides CCNA_01951: CCNA_01951 - multimodular transpeptidase-transglycosylase PbpY, at 2,093,252 to 2,095,621 _01951 CCNA_01952: CCNA_01952 - N-acetylmuramoyl-L-alanine amidase, at 2,095,782 to 2,096,969 _01952 CCNA_03959: CCNA_03959 - hypothetical protein, at 2,097,338 to 2,097,556 _03959 CCNA_01954: CCNA_01954 - ribonuclease E, at 2,097,480 to 2,100,176 _01954 Position (kb) 2095 2096 2097Strain fitness (log2 ratio) -2 -1 0 1 2at 2094.849 kb on + strand, within CCNA_01951at 2094.853 kb on - strand, within CCNA_01951at 2094.981 kb on + strand, within CCNA_01951at 2095.025 kb on - strand, within CCNA_01951at 2095.033 kb on - strand, within CCNA_01951at 2095.105 kb on + strand, within CCNA_01951at 2095.111 kb on + strand, within CCNA_01951at 2095.112 kb on - strand, within CCNA_01951at 2095.234 kb on + strand, within CCNA_01951at 2095.356 kb on + strand, within CCNA_01951at 2095.385 kb on - strandat 2095.387 kb on + strandat 2095.422 kb on - strandat 2095.456 kb on - strandat 2095.484 kb on - strandat 2095.517 kb on - strandat 2095.517 kb on - strandat 2095.609 kb on + strandat 2095.627 kb on - strandat 2095.665 kb on - strandat 2095.686 kb on + strandat 2095.687 kb on - strandat 2095.716 kb on - strandat 2095.759 kb on + strandat 2095.767 kb on - strandat 2095.774 kb on - strandat 2095.780 kb on + strandat 2095.786 kb on + strandat 2095.799 kb on - strandat 2096.420 kb on - strand, within CCNA_01952at 2096.923 kb on + strandat 2096.923 kb on + strandat 2096.923 kb on + strandat 2096.923 kb on + strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.942 kb on - strandat 2096.942 kb on - strandat 2096.952 kb on + strandat 2096.965 kb on - strandat 2096.967 kb on - strandat 2097.012 kb on - strandat 2097.042 kb on - strandat 2097.097 kb on - strandat 2097.117 kb on + strandat 2097.125 kb on - strandat 2097.128 kb on + strandat 2097.186 kb on + strandat 2097.221 kb on + strandat 2097.322 kb on + strandat 2097.368 kb on + strandat 2097.420 kb on + strand, within CCNA_03959at 2097.451 kb on - strand, within CCNA_03959

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,094,849 + CCNA_01951 0.67 +0.2
2,094,853 - CCNA_01951 0.68 +0.8
2,094,981 + CCNA_01951 0.73 +1.3
2,095,025 - CCNA_01951 0.75 +1.0
2,095,033 - CCNA_01951 0.75 +1.9
2,095,105 + CCNA_01951 0.78 +0.3
2,095,111 + CCNA_01951 0.78 -1.7
2,095,112 - CCNA_01951 0.78 +0.9
2,095,234 + CCNA_01951 0.84 -0.5
2,095,356 + CCNA_01951 0.89 -0.3
2,095,385 - +0.9
2,095,387 + -1.2
2,095,422 - -1.1
2,095,456 - -0.2
2,095,484 - +0.3
2,095,517 - +1.4
2,095,517 - -0.9
2,095,609 + -0.8
2,095,627 - -0.1
2,095,665 - +0.6
2,095,686 + -2.2
2,095,687 - -0.6
2,095,716 - -1.0
2,095,759 + +2.7
2,095,767 - +1.6
2,095,774 - -0.1
2,095,780 + -0.7
2,095,786 + -2.4
2,095,799 - +0.5
2,096,420 - CCNA_01952 0.54 -0.3
2,096,923 + -0.6
2,096,923 + -1.2
2,096,923 + -2.0
2,096,923 + -1.2
2,096,931 - +0.9
2,096,931 - +1.4
2,096,931 - +1.4
2,096,931 - +0.6
2,096,931 - +1.0
2,096,931 - +1.2
2,096,931 - +1.2
2,096,931 - +1.3
2,096,931 - +1.2
2,096,931 - +2.3
2,096,942 - +1.7
2,096,942 - +0.9
2,096,952 + +0.4
2,096,965 - -1.2
2,096,967 - -0.3
2,097,012 - +0.7
2,097,042 - -1.4
2,097,097 - -0.2
2,097,117 + +0.8
2,097,125 - -2.5
2,097,128 + +0.7
2,097,186 + +1.3
2,097,221 + +0.2
2,097,322 + +1.7
2,097,368 + +2.1
2,097,420 + CCNA_03959 0.37 +2.7
2,097,451 - CCNA_03959 0.52 -2.0

Or see this region's nucleotide sequence