Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01783 and CCNA_01784 are separated by 176 nucleotides CCNA_01784 and CCNA_01785 overlap by 134 nucleotides CCNA_01785 and CCNA_01786 are separated by 898 nucleotides
CCNA_01783: CCNA_01783 - chromosome replication regulator protein HdaA, at 1,911,358 to 1,912,050
_01783
CCNA_01784: CCNA_01784 - hypothetical protein, at 1,912,227 to 1,912,619
_01784
CCNA_01785: CCNA_01785 - hypothetical protein, at 1,912,486 to 1,913,097
_01785
CCNA_01786: CCNA_01786 - EcsC family protein, at 1,913,996 to 1,914,736
_01786
Position (kb)
1912
1913
1914 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1912.084 kb on + strand at 1912.094 kb on - strand at 1912.152 kb on - strand at 1912.152 kb on - strand at 1912.165 kb on + strand at 1912.165 kb on + strand at 1912.165 kb on + strand at 1912.173 kb on - strand at 1912.173 kb on - strand at 1912.182 kb on + strand at 1912.182 kb on + strand at 1912.182 kb on + strand at 1912.190 kb on - strand at 1912.190 kb on - strand at 1912.190 kb on - strand at 1912.190 kb on - strand at 1912.307 kb on - strand, within CCNA_01784 at 1912.311 kb on - strand, within CCNA_01784 at 1912.344 kb on - strand, within CCNA_01784 at 1912.380 kb on - strand at 1912.380 kb on - strand, within CCNA_01784 at 1912.466 kb on + strand, within CCNA_01784 at 1912.471 kb on + strand, within CCNA_01784 at 1912.472 kb on - strand, within CCNA_01784 at 1912.491 kb on - strand at 1912.597 kb on - strand at 1912.638 kb on - strand, within CCNA_01785 at 1912.638 kb on - strand, within CCNA_01785 at 1912.652 kb on + strand, within CCNA_01785 at 1912.733 kb on - strand, within CCNA_01785 at 1912.733 kb on - strand, within CCNA_01785 at 1912.736 kb on - strand, within CCNA_01785 at 1912.741 kb on - strand, within CCNA_01785 at 1912.799 kb on + strand, within CCNA_01785 at 1912.834 kb on - strand, within CCNA_01785 at 1912.838 kb on + strand, within CCNA_01785 at 1912.838 kb on + strand, within CCNA_01785 at 1912.847 kb on - strand, within CCNA_01785 at 1912.856 kb on + strand, within CCNA_01785 at 1912.902 kb on - strand, within CCNA_01785 at 1912.941 kb on + strand, within CCNA_01785 at 1913.087 kb on - strand at 1913.087 kb on - strand at 1913.087 kb on - strand at 1913.087 kb on - strand at 1913.087 kb on - strand at 1913.087 kb on - strand at 1913.087 kb on - strand at 1913.091 kb on + strand at 1913.163 kb on + strand at 1913.174 kb on - strand at 1913.181 kb on - strand at 1913.206 kb on - strand at 1913.222 kb on + strand at 1913.223 kb on - strand at 1913.230 kb on + strand at 1913.235 kb on + strand at 1913.238 kb on - strand at 1913.238 kb on - strand at 1913.240 kb on + strand at 1913.243 kb on - strand at 1913.243 kb on - strand at 1913.248 kb on - strand at 1913.298 kb on + strand at 1913.298 kb on + strand at 1913.298 kb on + strand at 1913.298 kb on + strand at 1913.306 kb on - strand at 1913.306 kb on - strand at 1913.306 kb on - strand at 1913.308 kb on + strand at 1913.308 kb on + strand at 1913.308 kb on + strand at 1913.308 kb on + strand at 1913.316 kb on - strand at 1913.316 kb on - strand at 1913.318 kb on + strand at 1913.318 kb on + strand at 1913.326 kb on - strand at 1913.326 kb on - strand at 1913.341 kb on + strand at 1913.374 kb on + strand at 1913.374 kb on + strand at 1913.374 kb on + strand at 1913.374 kb on + strand at 1913.374 kb on + strand at 1913.382 kb on - strand at 1913.431 kb on - strand at 1913.434 kb on + strand at 1913.453 kb on + strand at 1913.453 kb on + strand at 1913.456 kb on - strand at 1913.458 kb on + strand at 1913.524 kb on + strand at 1913.524 kb on + strand at 1913.526 kb on - strand at 1913.526 kb on - strand at 1913.532 kb on - strand at 1913.536 kb on + strand at 1913.549 kb on + strand at 1913.549 kb on + strand at 1913.549 kb on + strand at 1913.557 kb on - strand at 1913.559 kb on + strand at 1913.597 kb on - strand at 1913.604 kb on - strand at 1913.617 kb on + strand at 1913.625 kb on - strand at 1913.625 kb on - strand at 1913.641 kb on - strand at 1913.651 kb on + strand at 1913.658 kb on - strand at 1913.678 kb on - strand at 1913.678 kb on - strand at 1913.692 kb on + strand at 1913.747 kb on - strand at 1913.751 kb on - strand at 1913.773 kb on + strand at 1913.794 kb on - strand at 1913.797 kb on + strand at 1913.797 kb on + strand at 1913.802 kb on + strand at 1913.805 kb on - strand at 1913.832 kb on - strand at 1913.887 kb on - strand at 1913.894 kb on + strand at 1913.902 kb on - strand at 1913.983 kb on - strand at 1913.988 kb on - strand at 1913.992 kb on + strand at 1914.014 kb on - strand at 1914.014 kb on - strand at 1914.022 kb on - strand at 1914.077 kb on + strand, within CCNA_01786
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,912,084 + -1.0 1,912,094 - +1.0 1,912,152 - -1.0 1,912,152 - +0.1 1,912,165 + -2.3 1,912,165 + -2.1 1,912,165 + -1.6 1,912,173 - -3.0 1,912,173 - -2.5 1,912,182 + -1.4 1,912,182 + -1.9 1,912,182 + -1.4 1,912,190 - -1.7 1,912,190 - -2.4 1,912,190 - -1.8 1,912,190 - -0.9 1,912,307 - CCNA_01784 0.20 -1.7 1,912,311 - CCNA_01784 0.21 -1.1 1,912,344 - CCNA_01784 0.30 -2.1 1,912,380 - +3.5 1,912,380 - CCNA_01784 0.39 -0.7 1,912,466 + CCNA_01784 0.61 -0.6 1,912,471 + CCNA_01784 0.62 +0.6 1,912,472 - CCNA_01784 0.62 -1.6 1,912,491 - -0.7 1,912,597 - +0.3 1,912,638 - CCNA_01785 0.25 -3.0 1,912,638 - CCNA_01785 0.25 -0.1 1,912,652 + CCNA_01785 0.27 +0.5 1,912,733 - CCNA_01785 0.40 +0.2 1,912,733 - CCNA_01785 0.40 -1.2 1,912,736 - CCNA_01785 0.41 -1.3 1,912,741 - CCNA_01785 0.42 -1.8 1,912,799 + CCNA_01785 0.51 -1.0 1,912,834 - CCNA_01785 0.57 -2.0 1,912,838 + CCNA_01785 0.58 -1.8 1,912,838 + CCNA_01785 0.58 -1.3 1,912,847 - CCNA_01785 0.59 -1.4 1,912,856 + CCNA_01785 0.60 -3.1 1,912,902 - CCNA_01785 0.68 -2.6 1,912,941 + CCNA_01785 0.74 -0.1 1,913,087 - +1.4 1,913,087 - -0.8 1,913,087 - +0.4 1,913,087 - +1.1 1,913,087 - -0.4 1,913,087 - -1.5 1,913,087 - -0.9 1,913,091 + -0.1 1,913,163 + -0.6 1,913,174 - -0.6 1,913,181 - +0.0 1,913,206 - -0.1 1,913,222 + -0.4 1,913,223 - -1.8 1,913,230 + -0.6 1,913,235 + -0.5 1,913,238 - -2.1 1,913,238 - -1.7 1,913,240 + -0.3 1,913,243 - -1.6 1,913,243 - +1.3 1,913,248 - +2.9 1,913,298 + -0.7 1,913,298 + +0.6 1,913,298 + -1.1 1,913,298 + +0.5 1,913,306 - -0.9 1,913,306 - +0.9 1,913,306 - -0.8 1,913,308 + +0.3 1,913,308 + +1.4 1,913,308 + +0.5 1,913,308 + -0.1 1,913,316 - +4.9 1,913,316 - +0.6 1,913,318 + +2.5 1,913,318 + +0.4 1,913,326 - -2.3 1,913,326 - +0.4 1,913,341 + -0.3 1,913,374 + +0.5 1,913,374 + +1.7 1,913,374 + +0.6 1,913,374 + -0.5 1,913,374 + +0.2 1,913,382 - -2.3 1,913,431 - -0.3 1,913,434 + +1.0 1,913,453 + -0.2 1,913,453 + +2.1 1,913,456 - +0.8 1,913,458 + -0.5 1,913,524 + -1.1 1,913,524 + +0.7 1,913,526 - +0.1 1,913,526 - +1.0 1,913,532 - +1.4 1,913,536 + -0.6 1,913,549 + -0.8 1,913,549 + +0.8 1,913,549 + -0.8 1,913,557 - -0.8 1,913,559 + +0.2 1,913,597 - +1.2 1,913,604 - -0.1 1,913,617 + -0.2 1,913,625 - +0.1 1,913,625 - +0.8 1,913,641 - +0.7 1,913,651 + +1.6 1,913,658 - +0.1 1,913,678 - -0.8 1,913,678 - -2.7 1,913,692 + +1.2 1,913,747 - -2.6 1,913,751 - -0.0 1,913,773 + -2.0 1,913,794 - +0.0 1,913,797 + -0.1 1,913,797 + +1.7 1,913,802 + -0.7 1,913,805 - -0.1 1,913,832 - -0.2 1,913,887 - +1.0 1,913,894 + -0.1 1,913,902 - +0.3 1,913,983 - +0.9 1,913,988 - +0.9 1,913,992 + +0.3 1,914,014 - +0.6 1,914,014 - -0.1 1,914,022 - +1.0 1,914,077 + CCNA_01786 0.11 +2.0
Or see this region's nucleotide sequence