Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00201

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00200 and CCNA_00201 are separated by 162 nucleotidesCCNA_00201 and CCNA_00202 are separated by 116 nucleotides CCNA_00200: CCNA_00200 - 2OG-Fe(II) oxygenase superfamily protein, at 214,320 to 215,255 _00200 CCNA_00201: CCNA_00201 - outer membrane protein, at 215,418 to 216,098 _00201 CCNA_00202: CCNA_00202 - DesA-family fatty acid desaturase, at 216,215 to 217,270 _00202 Position (kb) 215 216 217Strain fitness (log2 ratio) -2 -1 0 1 2at 214.421 kb on - strand, within CCNA_00200at 214.421 kb on - strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.463 kb on + strand, within CCNA_00200at 214.468 kb on + strand, within CCNA_00200at 214.471 kb on - strand, within CCNA_00200at 214.512 kb on + strand, within CCNA_00200at 214.515 kb on + strand, within CCNA_00200at 214.515 kb on + strand, within CCNA_00200at 214.523 kb on - strand, within CCNA_00200at 214.523 kb on - strand, within CCNA_00200at 214.527 kb on + strand, within CCNA_00200at 214.528 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.559 kb on - strand, within CCNA_00200at 214.616 kb on - strand, within CCNA_00200at 214.623 kb on + strand, within CCNA_00200at 214.626 kb on - strand, within CCNA_00200at 214.639 kb on - strand, within CCNA_00200at 214.641 kb on + strand, within CCNA_00200at 214.646 kb on + strand, within CCNA_00200at 214.672 kb on + strand, within CCNA_00200at 214.672 kb on + strand, within CCNA_00200at 214.680 kb on - strand, within CCNA_00200at 214.734 kb on + strand, within CCNA_00200at 214.748 kb on + strand, within CCNA_00200at 214.751 kb on - strand, within CCNA_00200at 214.796 kb on + strand, within CCNA_00200at 214.802 kb on + strand, within CCNA_00200at 214.804 kb on - strand, within CCNA_00200at 214.824 kb on - strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.859 kb on - strand, within CCNA_00200at 214.859 kb on - strand, within CCNA_00200at 214.869 kb on - strand, within CCNA_00200at 214.905 kb on - strand, within CCNA_00200at 214.963 kb on - strand, within CCNA_00200at 214.988 kb on - strand, within CCNA_00200at 215.018 kb on + strand, within CCNA_00200at 215.020 kb on + strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.046 kb on - strand, within CCNA_00200at 215.055 kb on + strand, within CCNA_00200at 215.065 kb on + strand, within CCNA_00200at 215.100 kb on + strandat 215.100 kb on + strand, within CCNA_00200at 215.165 kb on - strandat 215.172 kb on - strandat 215.194 kb on - strandat 215.205 kb on + strandat 215.272 kb on - strandat 215.303 kb on - strandat 215.376 kb on - strandat 215.382 kb on + strandat 215.409 kb on + strandat 215.454 kb on + strandat 215.454 kb on + strandat 215.459 kb on + strandat 215.462 kb on - strandat 215.473 kb on - strandat 215.499 kb on - strand, within CCNA_00201at 215.501 kb on + strand, within CCNA_00201at 215.559 kb on - strand, within CCNA_00201at 215.559 kb on - strand, within CCNA_00201at 215.563 kb on + strand, within CCNA_00201at 215.563 kb on + strandat 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.571 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.581 kb on - strand, within CCNA_00201at 215.590 kb on - strand, within CCNA_00201at 215.595 kb on - strand, within CCNA_00201at 215.624 kb on + strand, within CCNA_00201at 215.624 kb on + strand, within CCNA_00201at 215.656 kb on - strand, within CCNA_00201at 215.704 kb on + strand, within CCNA_00201at 215.712 kb on - strand, within CCNA_00201at 215.713 kb on + strand, within CCNA_00201at 215.721 kb on - strand, within CCNA_00201at 215.721 kb on - strand, within CCNA_00201at 215.756 kb on + strand, within CCNA_00201at 215.769 kb on + strand, within CCNA_00201at 215.769 kb on + strand, within CCNA_00201at 215.838 kb on - strand, within CCNA_00201at 215.859 kb on - strand, within CCNA_00201at 215.877 kb on + strand, within CCNA_00201at 215.889 kb on + strand, within CCNA_00201at 215.899 kb on + strand, within CCNA_00201at 215.907 kb on - strand, within CCNA_00201at 215.920 kb on - strand, within CCNA_00201at 215.944 kb on - strand, within CCNA_00201at 216.012 kb on - strand, within CCNA_00201at 216.049 kb on + strandat 216.054 kb on + strandat 216.081 kb on - strandat 216.087 kb on + strandat 216.095 kb on - strandat 216.101 kb on + strandat 216.135 kb on + strandat 216.135 kb on + strandat 216.135 kb on - strandat 216.141 kb on - strandat 216.143 kb on - strandat 216.187 kb on + strandat 216.195 kb on - strandat 216.195 kb on - strandat 216.197 kb on - strandat 216.197 kb on - strandat 216.197 kb on - strandat 216.253 kb on + strandat 216.254 kb on + strandat 216.255 kb on + strandat 216.261 kb on - strandat 216.263 kb on - strandat 216.263 kb on - strandat 216.274 kb on + strandat 216.275 kb on - strandat 216.293 kb on + strandat 216.298 kb on + strandat 216.298 kb on + strandat 216.298 kb on + strandat 216.298 kb on + strandat 216.298 kb on + strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.329 kb on + strand, within CCNA_00202at 216.337 kb on - strand, within CCNA_00202at 216.337 kb on - strand, within CCNA_00202at 216.362 kb on - strand, within CCNA_00202at 216.372 kb on - strand, within CCNA_00202at 216.423 kb on + strand, within CCNA_00202at 216.486 kb on + strand, within CCNA_00202at 216.530 kb on + strand, within CCNA_00202at 216.532 kb on + strand, within CCNA_00202at 216.539 kb on + strand, within CCNA_00202at 216.551 kb on + strand, within CCNA_00202at 216.559 kb on + strand, within CCNA_00202at 216.584 kb on - strand, within CCNA_00202at 216.603 kb on - strand, within CCNA_00202at 216.607 kb on + strand, within CCNA_00202at 216.615 kb on + strand, within CCNA_00202at 216.621 kb on - strand, within CCNA_00202at 216.663 kb on - strand, within CCNA_00202at 216.677 kb on - strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.793 kb on - strand, within CCNA_00202at 216.793 kb on - strand, within CCNA_00202at 216.805 kb on + strand, within CCNA_00202at 216.812 kb on - strand, within CCNA_00202at 216.840 kb on + strand, within CCNA_00202at 216.848 kb on - strand, within CCNA_00202at 216.848 kb on - strand, within CCNA_00202at 216.893 kb on + strand, within CCNA_00202at 216.901 kb on - strand, within CCNA_00202at 216.912 kb on + strand, within CCNA_00202at 216.956 kb on - strand, within CCNA_00202at 216.956 kb on - strand, within CCNA_00202at 216.964 kb on - strand, within CCNA_00202at 216.987 kb on - strand, within CCNA_00202at 217.064 kb on + strand, within CCNA_00202at 217.074 kb on + strand, within CCNA_00202at 217.074 kb on + strand, within CCNA_00202at 217.082 kb on + strand, within CCNA_00202

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
214,421 - CCNA_00200 0.11 +2.1
214,421 - CCNA_00200 0.11 +1.1
214,423 + CCNA_00200 0.11 -2.1
214,463 + CCNA_00200 0.15 -2.3
214,468 + CCNA_00200 0.16 -0.4
214,471 - CCNA_00200 0.16 +1.7
214,512 + CCNA_00200 0.21 -1.6
214,515 + CCNA_00200 0.21 -0.4
214,515 + CCNA_00200 0.21 -0.2
214,523 - CCNA_00200 0.22 +1.6
214,523 - CCNA_00200 0.22 +1.4
214,527 + CCNA_00200 0.22 -0.6
214,528 - CCNA_00200 0.22 +1.4
214,530 - CCNA_00200 0.22 +1.0
214,530 - CCNA_00200 0.22 +1.1
214,530 - CCNA_00200 0.22 +1.1
214,530 - CCNA_00200 0.22 +1.4
214,530 - CCNA_00200 0.22 +1.2
214,559 - CCNA_00200 0.26 +1.1
214,616 - CCNA_00200 0.32 +2.6
214,623 + CCNA_00200 0.32 -0.1
214,626 - CCNA_00200 0.33 +1.8
214,639 - CCNA_00200 0.34 +0.8
214,641 + CCNA_00200 0.34 -1.1
214,646 + CCNA_00200 0.35 -1.2
214,672 + CCNA_00200 0.38 -1.1
214,672 + CCNA_00200 0.38 -2.5
214,680 - CCNA_00200 0.38 +0.7
214,734 + CCNA_00200 0.44 -0.2
214,748 + CCNA_00200 0.46 -2.3
214,751 - CCNA_00200 0.46 +1.2
214,796 + CCNA_00200 0.51 -0.0
214,802 + CCNA_00200 0.51 +0.2
214,804 - CCNA_00200 0.52 +1.0
214,824 - CCNA_00200 0.54 +1.1
214,851 + CCNA_00200 0.57 +0.5
214,851 + CCNA_00200 0.57 -0.9
214,851 + CCNA_00200 0.57 -0.9
214,859 - CCNA_00200 0.58 +0.8
214,859 - CCNA_00200 0.58 -0.1
214,869 - CCNA_00200 0.59 +0.8
214,905 - CCNA_00200 0.62 +1.4
214,963 - CCNA_00200 0.69 +2.2
214,988 - CCNA_00200 0.71 +0.3
215,018 + CCNA_00200 0.75 -0.4
215,020 + CCNA_00200 0.75 -0.2
215,037 + CCNA_00200 0.77 -1.5
215,046 - CCNA_00200 0.78 -0.0
215,055 + CCNA_00200 0.79 -0.9
215,065 + CCNA_00200 0.80 +0.4
215,100 + -0.2
215,100 + CCNA_00200 0.83 -2.1
215,165 - +1.2
215,172 - +0.1
215,194 - +0.2
215,205 + -1.1
215,272 - +0.8
215,303 - -1.3
215,376 - -2.3
215,382 + -0.5
215,409 + -1.1
215,454 + -0.4
215,454 + -0.9
215,459 + -1.1
215,462 - +0.6
215,473 - +1.4
215,499 - CCNA_00201 0.12 -2.2
215,501 + CCNA_00201 0.12 -0.1
215,559 - CCNA_00201 0.21 -0.7
215,559 - CCNA_00201 0.21 -0.3
215,563 + CCNA_00201 0.21 +0.1
215,563 + +0.1
215,568 + CCNA_00201 0.22 -0.3
215,568 + CCNA_00201 0.22 -0.8
215,568 + CCNA_00201 0.22 +1.5
215,568 + CCNA_00201 0.22 -0.1
215,568 + CCNA_00201 0.22 -0.5
215,568 + CCNA_00201 0.22 -2.0
215,568 + CCNA_00201 0.22 -1.5
215,571 - CCNA_00201 0.22 -0.8
215,576 - CCNA_00201 0.23 -0.8
215,576 - CCNA_00201 0.23 -1.1
215,576 - CCNA_00201 0.23 -2.0
215,576 - CCNA_00201 0.23 +0.4
215,576 - CCNA_00201 0.23 -0.9
215,576 - CCNA_00201 0.23 -0.9
215,576 - CCNA_00201 0.23 -0.3
215,576 - CCNA_00201 0.23 -1.1
215,576 - CCNA_00201 0.23 -0.6
215,576 - CCNA_00201 0.23 -0.3
215,581 - CCNA_00201 0.24 +0.7
215,590 - CCNA_00201 0.25 -0.6
215,595 - CCNA_00201 0.26 -1.1
215,624 + CCNA_00201 0.30 -1.0
215,624 + CCNA_00201 0.30 -0.3
215,656 - CCNA_00201 0.35 -0.6
215,704 + CCNA_00201 0.42 +0.4
215,712 - CCNA_00201 0.43 -2.4
215,713 + CCNA_00201 0.43 +0.1
215,721 - CCNA_00201 0.44 -1.6
215,721 - CCNA_00201 0.44 +0.4
215,756 + CCNA_00201 0.50 +0.3
215,769 + CCNA_00201 0.52 -0.8
215,769 + CCNA_00201 0.52 -0.6
215,838 - CCNA_00201 0.62 -0.9
215,859 - CCNA_00201 0.65 +1.5
215,877 + CCNA_00201 0.67 +0.9
215,889 + CCNA_00201 0.69 -1.7
215,899 + CCNA_00201 0.71 +1.6
215,907 - CCNA_00201 0.72 -0.0
215,920 - CCNA_00201 0.74 -1.3
215,944 - CCNA_00201 0.77 +0.4
216,012 - CCNA_00201 0.87 -1.3
216,049 + +1.0
216,054 + +1.1
216,081 - -1.5
216,087 + +0.7
216,095 - -2.7
216,101 + -1.3
216,135 + -0.2
216,135 + -2.1
216,135 - +1.2
216,141 - +0.5
216,143 - +1.8
216,187 + +0.4
216,195 - -0.7
216,195 - +1.1
216,197 - -1.7
216,197 - +0.1
216,197 - -1.8
216,253 + +0.2
216,254 + -0.0
216,255 + -0.0
216,261 - +0.8
216,263 - -0.0
216,263 - -1.5
216,274 + -0.4
216,275 - -0.7
216,293 + -0.9
216,298 + -1.4
216,298 + -0.1
216,298 + +0.5
216,298 + -0.4
216,298 + +0.5
216,306 - -1.0
216,306 - +0.4
216,329 + CCNA_00202 0.11 -0.0
216,337 - CCNA_00202 0.12 -1.1
216,337 - CCNA_00202 0.12 +0.5
216,362 - CCNA_00202 0.14 +1.2
216,372 - CCNA_00202 0.15 -2.1
216,423 + CCNA_00202 0.20 +0.3
216,486 + CCNA_00202 0.26 +0.2
216,530 + CCNA_00202 0.30 +1.0
216,532 + CCNA_00202 0.30 +1.8
216,539 + CCNA_00202 0.31 +0.9
216,551 + CCNA_00202 0.32 -0.4
216,559 + CCNA_00202 0.33 -1.1
216,584 - CCNA_00202 0.35 -1.4
216,603 - CCNA_00202 0.37 -1.6
216,607 + CCNA_00202 0.37 +1.4
216,615 + CCNA_00202 0.38 +0.8
216,621 - CCNA_00202 0.38 -0.4
216,663 - CCNA_00202 0.42 -1.2
216,677 - CCNA_00202 0.44 -1.2
216,785 + CCNA_00202 0.54 +0.3
216,785 + CCNA_00202 0.54 +0.7
216,785 + CCNA_00202 0.54 -0.0
216,785 + CCNA_00202 0.54 +0.0
216,785 + CCNA_00202 0.54 +1.0
216,785 + CCNA_00202 0.54 +1.2
216,785 + CCNA_00202 0.54 +0.4
216,793 - CCNA_00202 0.55 +1.6
216,793 - CCNA_00202 0.55 -1.6
216,805 + CCNA_00202 0.56 +1.5
216,812 - CCNA_00202 0.57 +0.7
216,840 + CCNA_00202 0.59 +1.2
216,848 - CCNA_00202 0.60 -2.0
216,848 - CCNA_00202 0.60 -0.9
216,893 + CCNA_00202 0.64 -0.1
216,901 - CCNA_00202 0.65 -2.1
216,912 + CCNA_00202 0.66 +1.5
216,956 - CCNA_00202 0.70 -1.9
216,956 - CCNA_00202 0.70 -1.3
216,964 - CCNA_00202 0.71 -1.5
216,987 - CCNA_00202 0.73 -2.5
217,064 + CCNA_00202 0.80 +0.8
217,074 + CCNA_00202 0.81 +1.1
217,074 + CCNA_00202 0.81 +0.9
217,082 + CCNA_00202 0.82 +1.4

Or see this region's nucleotide sequence