Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00042 and CCNA_00043 are separated by 78 nucleotides CCNA_00043 and CCNA_00044 are separated by 2 nucleotides CCNA_00044 and CCNA_00045 are separated by 258 nucleotides
CCNA_00042: CCNA_00042 - RNA-binding protein, YlxR family, at 45,893 to 46,543
_00042
CCNA_00043: CCNA_00043 - N utilization substance protein A NusA, at 46,622 to 48,268
_00043
CCNA_00044: CCNA_00044 - ribosome maturation protein RimP, at 48,271 to 48,846
_00044
CCNA_00045: CCNA_00045 - inorganic pyrophosphatase, at 49,105 to 49,638
_00045
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2 at 45.628 kb on - strand at 45.720 kb on - strand at 45.859 kb on - strand at 46.488 kb on + strand at 46.518 kb on + strand at 46.556 kb on + strand at 46.556 kb on + strand at 46.564 kb on - strand at 46.608 kb on - strand at 46.618 kb on - strand at 46.618 kb on - strand at 46.620 kb on + strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.628 kb on - strand at 46.655 kb on + strand at 46.655 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.876 kb on - strand, within CCNA_00043 at 46.903 kb on - strand, within CCNA_00043 at 46.908 kb on - strand, within CCNA_00043 at 46.908 kb on - strand, within CCNA_00043 at 46.916 kb on - strand, within CCNA_00043 at 46.921 kb on - strand, within CCNA_00043 at 46.921 kb on - strand, within CCNA_00043 at 46.937 kb on + strand, within CCNA_00043 at 46.955 kb on + strand, within CCNA_00043 at 46.962 kb on + strand, within CCNA_00043 at 46.963 kb on - strand, within CCNA_00043 at 46.963 kb on - strand, within CCNA_00043 at 46.970 kb on - strand, within CCNA_00043 at 48.277 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.367 kb on - strand, within CCNA_00044 at 48.367 kb on - strand, within CCNA_00044 at 48.377 kb on - strand, within CCNA_00044 at 48.385 kb on - strand, within CCNA_00044 at 48.403 kb on - strand, within CCNA_00044 at 48.438 kb on - strand, within CCNA_00044 at 48.478 kb on - strand, within CCNA_00044 at 48.478 kb on - strand, within CCNA_00044 at 48.495 kb on - strand, within CCNA_00044 at 48.576 kb on - strand, within CCNA_00044 at 48.662 kb on - strand, within CCNA_00044 at 49.019 kb on - strand at 49.039 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 45,628 - +0.1 45,720 - +0.6 45,859 - +0.3 46,488 + +0.8 46,518 + -0.2 46,556 + +0.1 46,556 + -1.4 46,564 - +0.3 46,608 - +1.1 46,618 - +1.9 46,618 - +1.1 46,620 + +0.3 46,627 - +1.4 46,627 - +0.8 46,627 - +2.0 46,627 - +1.4 46,627 - +1.5 46,627 - +0.7 46,628 - +1.8 46,655 + -1.0 46,655 + -0.5 46,716 + -2.1 46,716 + -2.3 46,876 - CCNA_00043 0.15 -1.9 46,903 - CCNA_00043 0.17 -2.4 46,908 - CCNA_00043 0.17 -1.5 46,908 - CCNA_00043 0.17 -1.2 46,916 - CCNA_00043 0.18 -2.4 46,921 - CCNA_00043 0.18 -1.9 46,921 - CCNA_00043 0.18 -1.6 46,937 + CCNA_00043 0.19 -2.2 46,955 + CCNA_00043 0.20 -1.5 46,962 + CCNA_00043 0.21 -1.8 46,963 - CCNA_00043 0.21 -2.2 46,963 - CCNA_00043 0.21 -2.0 46,970 - CCNA_00043 0.21 -1.5 48,277 - +0.1 48,302 - -0.8 48,302 - +1.1 48,302 - +1.1 48,302 - +0.7 48,302 - +1.4 48,302 - +0.7 48,302 - +0.2 48,302 - +1.6 48,367 - CCNA_00044 0.17 +2.0 48,367 - CCNA_00044 0.17 +1.0 48,377 - CCNA_00044 0.18 +0.6 48,385 - CCNA_00044 0.20 +0.1 48,403 - CCNA_00044 0.23 +1.0 48,438 - CCNA_00044 0.29 +0.1 48,478 - CCNA_00044 0.36 +0.3 48,478 - CCNA_00044 0.36 -0.7 48,495 - CCNA_00044 0.39 -1.0 48,576 - CCNA_00044 0.53 -0.9 48,662 - CCNA_00044 0.68 +0.4 49,019 - -1.2 49,039 + -1.9
Or see this region's nucleotide sequence