Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21045

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21040 and CA265_RS21045 are separated by 169 nucleotidesCA265_RS21045 and CA265_RS21050 overlap by 1 nucleotides CA265_RS21040: CA265_RS21040 - hypothetical protein, at 5,182,560 to 5,184,047 _RS21040 CA265_RS21045: CA265_RS21045 - hypothetical protein, at 5,184,217 to 5,184,960 _RS21045 CA265_RS21050: CA265_RS21050 - Nif3-like dinuclear metal center hexameric protein, at 5,184,960 to 5,186,057 _RS21050 Position (kb) 5184 5185Strain fitness (log2 ratio) -2 -1 0 1 2at 5183.277 kb on - strand, within CA265_RS21040at 5183.287 kb on + strand, within CA265_RS21040at 5183.287 kb on + strand, within CA265_RS21040at 5183.287 kb on + strand, within CA265_RS21040at 5183.288 kb on - strand, within CA265_RS21040at 5183.338 kb on + strand, within CA265_RS21040at 5183.338 kb on + strand, within CA265_RS21040at 5183.338 kb on + strand, within CA265_RS21040at 5183.339 kb on - strand, within CA265_RS21040at 5183.339 kb on - strand, within CA265_RS21040at 5183.370 kb on - strand, within CA265_RS21040at 5183.370 kb on - strand, within CA265_RS21040at 5183.388 kb on + strand, within CA265_RS21040at 5183.392 kb on + strand, within CA265_RS21040at 5183.392 kb on + strand, within CA265_RS21040at 5183.392 kb on + strand, within CA265_RS21040at 5183.472 kb on - strand, within CA265_RS21040at 5183.475 kb on + strand, within CA265_RS21040at 5183.514 kb on + strand, within CA265_RS21040at 5183.515 kb on - strand, within CA265_RS21040at 5183.526 kb on + strand, within CA265_RS21040at 5183.561 kb on + strand, within CA265_RS21040at 5183.580 kb on + strand, within CA265_RS21040at 5183.581 kb on - strand, within CA265_RS21040at 5183.642 kb on + strand, within CA265_RS21040at 5183.643 kb on - strand, within CA265_RS21040at 5183.643 kb on - strand, within CA265_RS21040at 5183.651 kb on + strand, within CA265_RS21040at 5183.651 kb on + strand, within CA265_RS21040at 5183.652 kb on - strand, within CA265_RS21040at 5183.701 kb on - strand, within CA265_RS21040at 5183.723 kb on - strand, within CA265_RS21040at 5183.728 kb on + strand, within CA265_RS21040at 5183.758 kb on - strand, within CA265_RS21040at 5183.758 kb on - strand, within CA265_RS21040at 5183.845 kb on + strand, within CA265_RS21040at 5183.874 kb on - strand, within CA265_RS21040at 5183.903 kb on + strandat 5183.904 kb on - strandat 5183.927 kb on + strandat 5183.938 kb on - strandat 5183.946 kb on - strandat 5183.989 kb on - strandat 5184.055 kb on + strandat 5184.057 kb on + strandat 5184.057 kb on + strandat 5184.058 kb on - strandat 5184.058 kb on - strandat 5184.058 kb on - strandat 5184.101 kb on - strandat 5184.112 kb on + strandat 5184.112 kb on + strandat 5184.113 kb on - strandat 5184.118 kb on - strandat 5184.198 kb on - strandat 5185.129 kb on + strand, within CA265_RS21050at 5185.130 kb on - strand, within CA265_RS21050at 5185.233 kb on - strand, within CA265_RS21050at 5185.233 kb on - strand, within CA265_RS21050at 5185.281 kb on + strand, within CA265_RS21050at 5185.281 kb on + strand, within CA265_RS21050at 5185.311 kb on - strand, within CA265_RS21050at 5185.315 kb on + strand, within CA265_RS21050at 5185.377 kb on - strand, within CA265_RS21050at 5185.381 kb on + strand, within CA265_RS21050at 5185.396 kb on + strand, within CA265_RS21050at 5185.574 kb on - strand, within CA265_RS21050at 5185.574 kb on - strand, within CA265_RS21050at 5185.646 kb on - strand, within CA265_RS21050at 5185.650 kb on - strand, within CA265_RS21050at 5185.782 kb on - strand, within CA265_RS21050at 5185.785 kb on - strand, within CA265_RS21050at 5185.819 kb on + strand, within CA265_RS21050at 5185.871 kb on + strand, within CA265_RS21050at 5185.872 kb on - strand, within CA265_RS21050at 5185.908 kb on + strand, within CA265_RS21050at 5185.909 kb on - strand, within CA265_RS21050

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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5,183,277 - CA265_RS21040 0.48 +0.5
5,183,287 + CA265_RS21040 0.49 -0.8
5,183,287 + CA265_RS21040 0.49 +1.5
5,183,287 + CA265_RS21040 0.49 -1.3
5,183,288 - CA265_RS21040 0.49 +0.4
5,183,338 + CA265_RS21040 0.52 -1.4
5,183,338 + CA265_RS21040 0.52 -0.2
5,183,338 + CA265_RS21040 0.52 -0.2
5,183,339 - CA265_RS21040 0.52 +2.1
5,183,339 - CA265_RS21040 0.52 +1.2
5,183,370 - CA265_RS21040 0.54 -0.2
5,183,370 - CA265_RS21040 0.54 -0.3
5,183,388 + CA265_RS21040 0.56 -0.7
5,183,392 + CA265_RS21040 0.56 -1.3
5,183,392 + CA265_RS21040 0.56 -0.5
5,183,392 + CA265_RS21040 0.56 -2.3
5,183,472 - CA265_RS21040 0.61 -1.2
5,183,475 + CA265_RS21040 0.61 -2.6
5,183,514 + CA265_RS21040 0.64 -0.4
5,183,515 - CA265_RS21040 0.64 -1.5
5,183,526 + CA265_RS21040 0.65 -0.0
5,183,561 + CA265_RS21040 0.67 +0.8
5,183,580 + CA265_RS21040 0.69 -0.6
5,183,581 - CA265_RS21040 0.69 -0.3
5,183,642 + CA265_RS21040 0.73 -0.4
5,183,643 - CA265_RS21040 0.73 -0.8
5,183,643 - CA265_RS21040 0.73 +0.7
5,183,651 + CA265_RS21040 0.73 -0.6
5,183,651 + CA265_RS21040 0.73 +0.1
5,183,652 - CA265_RS21040 0.73 -0.5
5,183,701 - CA265_RS21040 0.77 -2.3
5,183,723 - CA265_RS21040 0.78 -0.0
5,183,728 + CA265_RS21040 0.78 +0.6
5,183,758 - CA265_RS21040 0.81 -0.5
5,183,758 - CA265_RS21040 0.81 +0.5
5,183,845 + CA265_RS21040 0.86 -1.0
5,183,874 - CA265_RS21040 0.88 +0.2
5,183,903 + -0.5
5,183,904 - -0.0
5,183,927 + +0.7
5,183,938 - +1.0
5,183,946 - -0.6
5,183,989 - -0.8
5,184,055 + -0.2
5,184,057 + +0.2
5,184,057 + +0.4
5,184,058 - +0.2
5,184,058 - -0.8
5,184,058 - +0.1
5,184,101 - -0.9
5,184,112 + -0.5
5,184,112 + +0.8
5,184,113 - -0.3
5,184,118 - +1.0
5,184,198 - +0.0
5,185,129 + CA265_RS21050 0.15 -0.6
5,185,130 - CA265_RS21050 0.15 +1.5
5,185,233 - CA265_RS21050 0.25 -0.2
5,185,233 - CA265_RS21050 0.25 -1.2
5,185,281 + CA265_RS21050 0.29 -0.2
5,185,281 + CA265_RS21050 0.29 +0.9
5,185,311 - CA265_RS21050 0.32 +1.3
5,185,315 + CA265_RS21050 0.32 +1.5
5,185,377 - CA265_RS21050 0.38 -0.4
5,185,381 + CA265_RS21050 0.38 -1.4
5,185,396 + CA265_RS21050 0.40 -0.8
5,185,574 - CA265_RS21050 0.56 -2.2
5,185,574 - CA265_RS21050 0.56 -0.5
5,185,646 - CA265_RS21050 0.62 -0.1
5,185,650 - CA265_RS21050 0.63 +0.8
5,185,782 - CA265_RS21050 0.75 -0.3
5,185,785 - CA265_RS21050 0.75 +0.4
5,185,819 + CA265_RS21050 0.78 +0.6
5,185,871 + CA265_RS21050 0.83 -0.8
5,185,872 - CA265_RS21050 0.83 -0.6
5,185,908 + CA265_RS21050 0.86 -0.5
5,185,909 - CA265_RS21050 0.86 +1.3

Or see this region's nucleotide sequence